Guide to the Human Genome
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Name: MUC4 Sequence: fasta or formatted (1176aa) NCBI GI: 112382233
Description:

mucin 4 isoform d

Referenced in:

Mucins

Other entries for this name:
alt prot [1125aa] mucin 4 isoform e
alt prot [5284aa] mucin 4 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         77           2
 C cysteine            3.8         45           2
 D aspartate           4.1         48           2
 E glutamate           4.7         55           3
 F phenylalanine       5.1         60           2
 G glycine             8.8        103           3
 H histidine           2.0         24           1
 I isoleucine          3.0         35           2
 K lysine              1.6         19           1
 L leucine             9.4        111           4
 M methionine          1.4         16           1
 N asparagine          4.8         56           3
 P proline             6.8         80           3
 Q glutamine           5.4         63           2
 R arginine            5.9         69           2
 S serine              9.1        107           3
 T threonine           6.0         71           2
 V valine              5.3         62           2
 W tryptophan          2.6         31           1
 Y tyrosine            3.7         44           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mucin 4 isoform d 
MUC4                  0.976   mucin 4 isoform a 
MUC4                  0.950   mucin 4 isoform e 
SUSD2                 0.047   sushi domain containing 2 
NID1                  0.019   nidogen 1 precursor 
NID2                  0.018   nidogen 2 precursor 
TECTA                 0.014   tectorin alpha precursor 
SNED1                 0.013   6720455I24Rik homolog 
NOTCH2                0.012   notch 2 preproprotein 
NOTCH4                0.012   notch4 preproprotein 
DLL4                  0.011   delta-like 4 protein precursor 
FCGBP                 0.011   Fc fragment of IgG binding protein 
CUBN                  0.011   cubilin 
STAB1                 0.011   stabilin 1 precursor 
LOC100290309          0.010   PREDICTED: hypothetical protein XP_002348012 
SLIT3                 0.010   slit homolog 3 
SSPO                  0.010   SCO-spondin 
DLL1                  0.009   delta-like 1 
NOTCH1                0.009   notch1 preproprotein 
LRP1                  0.009   low density lipoprotein-related protein 1 
MUC5B                 0.009   mucin 5, subtype B, tracheobronchial 
JAG1                  0.009   jagged 1 precursor 
JAG2                  0.009   jagged 2 isoform b precursor 
JAG2                  0.009   jagged 2 isoform a precursor 
KCP                   0.009   cysteine rich BMP regulator 2 isoform 1 
MUC5AC                0.008   mucin 5AC 
LOC100293676          0.008   PREDICTED: similar to Fc fragment of IgG binding pr...
TNN                   0.008   tenascin N 
VWF                   0.008   von Willebrand factor preproprotein 
LOC100293643          0.008   PREDICTED: similar to Fc fragment of IgG binding pr...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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