Guide to the Human Genome
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Name: LOC100130084 Sequence: fasta or formatted (222aa) NCBI GI: 169214487
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {222aa} PREDICTED: hypothetical protein
alt mRNA {222aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         25           2
 C cysteine            3.6          8           1
 D aspartate           3.2          7           1
 E glutamate           5.4         12           1
 F phenylalanine       2.7          6           2
 G glycine             9.0         20           2
 H histidine           2.3          5           1
 I isoleucine          0.5          1           1
 K lysine              4.5         10           1
 L leucine             7.7         17           2
 M methionine          0.9          2           1
 N asparagine          1.4          3           1
 P proline            10.4         23           2
 Q glutamine           2.7          6           1
 R arginine           12.2         27           3
 S serine              9.0         20           2
 T threonine           3.2          7           1
 V valine              6.8         15           1
 W tryptophan          2.3          5           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130084          1.000   PREDICTED: hypothetical protein 
LOC100130084          1.000   PREDICTED: hypothetical protein 
LOC100292370          0.020   PREDICTED: hypothetical protein 
RSPH4A                0.018   radial spoke head 4 homolog A isoform 2 
RSPH4A                0.018   radial spoke head 4 homolog A isoform 1 
LOC100291533          0.018   PREDICTED: hypothetical protein XP_002347080 
LOC643355             0.018   PREDICTED: hypothetical protein 
LOC100288002          0.018   PREDICTED: hypothetical protein XP_002342946 
LOC643355             0.018   PREDICTED: hypothetical protein 
LOC100294010          0.018   PREDICTED: hypothetical protein 
LOC100288796          0.018   PREDICTED: hypothetical protein 
LOC100291514          0.018   PREDICTED: hypothetical protein XP_002347163 
LOC100288796          0.018   PREDICTED: hypothetical protein XP_002343710 
LOC100289311          0.018   PREDICTED: hypothetical protein XP_002343026 
SHROOM3               0.016   shroom family member 3 protein 
ELFN1                 0.016   extracellular leucine-rich repeat and fibronectin t...
LOC100290023          0.016   PREDICTED: hypothetical protein XP_002348147 
C9orf86               0.016   Rab-like GTP-binding protein 1 isoform 1 
LOC100293879          0.014   PREDICTED: hypothetical protein 
PRB4                  0.014   proline-rich protein BstNI subfamily 4 precursor [Ho...
C9orf86               0.011   Rab-like GTP-binding protein 1 isoform 2 
AOX1                  0.011   aldehyde oxidase 1 
LOC100292793          0.011   PREDICTED: hypothetical protein 
FLJ22184              0.011   PREDICTED: hypothetical protein FLJ22184 
LOC100290071          0.011   PREDICTED: hypothetical protein XP_002347957 
FLJ22184              0.011   PREDICTED: hypothetical protein FLJ22184 
LOC100294439          0.011   PREDICTED: similar to Os05g0242100 
LOC100290319          0.011   PREDICTED: hypothetical protein XP_002347063 
LOC100290263          0.011   PREDICTED: hypothetical protein XP_002347916 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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