Guide to the Human Genome
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Name: RSPH4A Sequence: fasta or formatted (716aa) NCBI GI: 58219006
Description:

radial spoke head 4 homolog A isoform 1

Referenced in:

Additional Structural Proteins

Other entries for this name:
alt prot [600aa] radial spoke head 4 homolog A isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         49           2
 C cysteine            0.6          4           1
 D aspartate           5.4         39           2
 E glutamate          14.4        103           7
 F phenylalanine       3.8         27           2
 G glycine             5.6         40           2
 H histidine           1.8         13           2
 I isoleucine          4.6         33           2
 K lysine              4.5         32           2
 L leucine             6.7         48           2
 M methionine          1.0          7           1
 N asparagine          4.9         35           2
 P proline             8.8         63           3
 Q glutamine           5.9         42           2
 R arginine            4.1         29           2
 S serine              8.4         60           3
 T threonine           3.9         28           2
 V valine              4.2         30           1
 W tryptophan          1.3          9           1
 Y tyrosine            3.5         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   radial spoke head 4 homolog A isoform 1 
RSPH4A                0.765   radial spoke head 4 homolog A isoform 2 
RSHL1                 0.459   radial spokehead-like 1 
KIAA1211              0.015   hypothetical protein LOC57482 
NEFM                  0.015   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.015   neurofilament, medium polypeptide 150kDa isoform 2 ...
SRRM2                 0.015   splicing coactivator subunit SRm300 
SRRM1                 0.015   serine/arginine repetitive matrix 1 
LOC100292589          0.015   PREDICTED: hypothetical protein 
LOC100290121          0.015   PREDICTED: hypothetical protein XP_002346879 
LOC100289406          0.015   PREDICTED: hypothetical protein XP_002342721 
MUC7                  0.014   mucin 7, secreted precursor 
MUC7                  0.014   mucin 7, secreted precursor 
MUC7                  0.014   mucin 7, secreted precursor 
SCAF1                 0.014   SR-related CTD-associated factor 1 
TENC1                 0.014   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.014   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.014   tensin like C1 domain containing phosphatase isoform...
MAPK7                 0.014   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.014   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.014   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.014   mitogen-activated protein kinase 7 isoform 2 
MUPCDH                0.014   mucin and cadherin-like isoform 1 
RIN3                  0.014   Ras and Rab interactor 3 
ARID1A                0.013   AT rich interactive domain 1A isoform a 
ARID1A                0.013   AT rich interactive domain 1A isoform b 
PRG4                  0.013   proteoglycan 4 isoform D 
PRG4                  0.013   proteoglycan 4 isoform C 
PRG4                  0.013   proteoglycan 4 isoform B 
PRG4                  0.013   proteoglycan 4 isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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