Guide to the Human Genome
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Name: LOC100290071 Sequence: fasta or formatted (150aa) NCBI GI: 239751647
Description:

PREDICTED: hypothetical protein XP_002347957

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         20           2
 C cysteine            1.3          2           1
 D aspartate           0.7          1           1
 E glutamate           2.0          3           1
 F phenylalanine       0.0          0           0
 G glycine            10.7         16           2
 H histidine           2.7          4           1
 I isoleucine          0.7          1           1
 K lysine              0.7          1           1
 L leucine            10.0         15           2
 M methionine          2.0          3           1
 N asparagine          1.3          2           1
 P proline            17.3         26           3
 Q glutamine           4.0          6           2
 R arginine           16.0         24           2
 S serine              6.7         10           2
 T threonine           4.0          6           1
 V valine              6.0          9           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347957 
LOC100292793          1.000   PREDICTED: hypothetical protein 
LOC100287600          0.993   PREDICTED: hypothetical protein XP_002343679 
SYN1                  0.077   synapsin I isoform Ia 
SYN1                  0.077   synapsin I isoform Ib 
MED15                 0.070   mediator complex subunit 15 isoform b 
PRB3                  0.067   proline-rich protein BstNI subfamily 3 precursor [H...
LOC100291828          0.063   PREDICTED: hypothetical protein XP_002344932 
LOC100288926          0.063   PREDICTED: hypothetical protein XP_002343509 
LOC100287499          0.060   PREDICTED: hypothetical protein 
LOC100287499          0.060   PREDICTED: hypothetical protein XP_002343643 
BAT2                  0.060   HLA-B associated transcript-2 
FLJ22184              0.060   PREDICTED: hypothetical protein LOC80164 
PRB1                  0.060   proline-rich protein BstNI subfamily 1 isoform 3 pre...
LOC100127930          0.060   PREDICTED: hypothetical protein 
INF2                  0.056   inverted formin 2 isoform 2 
INF2                  0.056   inverted formin 2 isoform 1 
SRRM1                 0.056   serine/arginine repetitive matrix 1 
LOC100290946          0.056   PREDICTED: hypothetical protein XP_002347121 
LOC388279             0.056   PREDICTED: hypothetical protein 
LOC100288840          0.056   PREDICTED: hypothetical protein XP_002344246 
PRB2                  0.056   proline-rich protein BstNI subfamily 2 
REPS1                 0.053   RALBP1 associated Eps domain containing 1 isoform a...
REPS1                 0.053   RALBP1 associated Eps domain containing 1 isoform b...
PRB1                  0.053   proline-rich protein BstNI subfamily 1 isoform 1 pre...
TMEM181               0.053   G protein-coupled receptor 178 
LOC400236             0.053   PREDICTED: hypothetical protein 
LOC400236             0.053   PREDICTED: hypothetical protein 
TAF4                  0.053   TBP-associated factor 4 
WASL                  0.053   Wiskott-Aldrich syndrome gene-like protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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