Guide to the Human Genome
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Name: RSPH4A Sequence: fasta or formatted (600aa) NCBI GI: 239582735
Description:

radial spoke head 4 homolog A isoform 2

Referenced in:

Additional Structural Proteins

Other entries for this name:
alt prot [716aa] radial spoke head 4 homolog A isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         40           2
 C cysteine            0.5          3           1
 D aspartate           4.3         26           1
 E glutamate          12.5         75           5
 F phenylalanine       4.3         26           2
 G glycine             6.0         36           2
 H histidine           2.5         15           2
 I isoleucine          4.5         27           2
 K lysine              4.8         29           2
 L leucine             7.0         42           2
 M methionine          1.5          9           1
 N asparagine          4.5         27           2
 P proline             9.0         54           2
 Q glutamine           6.2         37           2
 R arginine            4.7         28           2
 S serine              9.0         54           3
 T threonine           4.2         25           2
 V valine              4.0         24           1
 W tryptophan          0.8          5           1
 Y tyrosine            3.0         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   radial spoke head 4 homolog A isoform 2 
RSPH4A                0.919   radial spoke head 4 homolog A isoform 1 
RSHL1                 0.367   radial spokehead-like 1 
KIAA1211              0.018   hypothetical protein LOC57482 
NEFM                  0.018   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.018   neurofilament, medium polypeptide 150kDa isoform 2 ...
SRRM2                 0.018   splicing coactivator subunit SRm300 
SRRM1                 0.018   serine/arginine repetitive matrix 1 
LOC100292589          0.018   PREDICTED: hypothetical protein 
LOC100290121          0.018   PREDICTED: hypothetical protein XP_002346879 
LOC100289406          0.018   PREDICTED: hypothetical protein XP_002342721 
MUC7                  0.017   mucin 7, secreted precursor 
MUC7                  0.017   mucin 7, secreted precursor 
MUC7                  0.017   mucin 7, secreted precursor 
SCAF1                 0.017   SR-related CTD-associated factor 1 
TENC1                 0.017   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.017   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.017   tensin like C1 domain containing phosphatase isoform...
MAPK7                 0.017   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.017   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.017   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.017   mitogen-activated protein kinase 7 isoform 2 
MUPCDH                0.017   mucin and cadherin-like isoform 1 
RIN3                  0.017   Ras and Rab interactor 3 
ARID1A                0.016   AT rich interactive domain 1A isoform a 
ARID1A                0.016   AT rich interactive domain 1A isoform b 
PRG4                  0.016   proteoglycan 4 isoform D 
PRG4                  0.016   proteoglycan 4 isoform C 
PRG4                  0.016   proteoglycan 4 isoform B 
PRG4                  0.016   proteoglycan 4 isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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