Guide to the Human Genome
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Name: LOC100294439 Sequence: fasta or formatted (758aa) NCBI GI: 239750468
Description:

PREDICTED: similar to Os05g0242100

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         46           2
 C cysteine            1.2          9           1
 D aspartate           7.1         54           1
 E glutamate           3.8         29           2
 F phenylalanine       4.6         35           1
 G glycine            11.1         84           3
 H histidine           4.2         32           1
 I isoleucine          2.6         20           1
 K lysine              1.6         12           1
 L leucine            15.3        116           2
 M methionine          0.8          6           1
 N asparagine          1.1          8           1
 P proline             5.9         45           2
 Q glutamine           7.3         55           1
 R arginine            7.9         60           5
 S serine              6.7         51           2
 T threonine           5.7         43           2
 V valine              6.3         48           3
 W tryptophan          0.5          4           1
 Y tyrosine            0.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Os05g0242100 
LOC100288312          0.734   PREDICTED: hypothetical protein XP_002343263 
LOC100293615          0.715   PREDICTED: similar to Os05g0242100 
LOC100133337          0.186   PREDICTED: similar to Os05g0242100 isoform 2 
LOC100133337          0.186   PREDICTED: similar to Os05g0242100 
LOC100133337          0.186   PREDICTED: similar to Os05g0242100 
LOC100133337          0.186   PREDICTED: hypothetical protein isoform 2 
LOC100133337          0.186   PREDICTED: hypothetical protein 
LOC100133337          0.186   PREDICTED: hypothetical protein 
LOC100133337          0.186   PREDICTED: similar to Os05g0242100 isoform 2 
LOC100133337          0.186   PREDICTED: similar to Os05g0242100 
LOC100133337          0.186   PREDICTED: similar to Os05g0242100 
RBM15B                0.015   RNA binding motif protein 15B 
FLJ37078              0.015   hypothetical protein LOC222183 
LOC100288963          0.013   PREDICTED: hypothetical protein XP_002342546 
LOC338758             0.011   PREDICTED: hypothetical protein 
LOC338758             0.011   PREDICTED: hypothetical protein 
LOC338758             0.011   PREDICTED: hypothetical protein 
BPTF                  0.011   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.011   bromodomain PHD finger transcription factor isoform ...
SRRM2                 0.011   splicing coactivator subunit SRm300 
CPEB3                 0.010   cytoplasmic polyadenylation element binding protein ...
LOC100292383          0.010   PREDICTED: hypothetical protein 
LOC100289917          0.010   PREDICTED: hypothetical protein XP_002347096 
FLJ31945              0.010   PREDICTED: hypothetical protein 
LOC284988             0.010   PREDICTED: hypothetical protein 
LOC100293935          0.009   PREDICTED: hypothetical protein 
LOC100287289          0.009   PREDICTED: hypothetical protein 
FLJ31945              0.009   PREDICTED: hypothetical protein 
LOC100287289          0.009   PREDICTED: hypothetical protein XP_002343656 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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