Guide to the Human Genome
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Name: ELFN1 Sequence: fasta or formatted (828aa) NCBI GI: 191252816
Description:

extracellular leucine-rich repeat and fibronectin type III domain containing 1

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         83           4
 C cysteine            2.3         19           1
 D aspartate           2.9         24           2
 E glutamate           6.5         54           4
 F phenylalanine       2.5         21           1
 G glycine             7.1         59           2
 H histidine           2.7         22           2
 I isoleucine          3.9         32           2
 K lysine              4.2         35           2
 L leucine            10.3         85           2
 M methionine          1.3         11           1
 N asparagine          3.1         26           2
 P proline             8.6         71           7
 Q glutamine           4.1         34           2
 R arginine            6.4         53           5
 S serine              8.9         74           3
 T threonine           5.0         41           2
 V valine              5.2         43           2
 W tryptophan          1.0          8           1
 Y tyrosine            4.0         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   extracellular leucine-rich repeat and fibronectin t... 
ELFN2                 0.406   leucine rich repeat containing 62 
SLIT1                 0.043   slit homolog 1 
PXDN                  0.041   peroxidasin 
SLIT3                 0.041   slit homolog 3 
SLITRK3               0.041   slit and trk like 3 protein 
SLIT2                 0.039   slit homolog 2 
ISLR2                 0.039   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.039   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.039   immunoglobulin superfamily containing leucine-rich r...
ISLR2                 0.039   immunoglobulin superfamily containing leucine-rich ...
PXDNL                 0.037   peroxidasin homolog-like 
SLITRK5               0.036   SLIT and NTRK-like family, member 5 
SLITRK6               0.035   slit and trk like 6 
GP5                   0.034   glycoprotein V (platelet) 
LRIG3                 0.034   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.034   leucine-rich repeats and immunoglobulin-like domain...
LRFN3                 0.034   leucine rich repeat and fibronectin type III domain ...
SLITRK4               0.033   slit and trk like 4 protein 
LRRTM2                0.033   leucine rich repeat transmembrane neuronal 2 
LRTM2                 0.033   leucine-rich repeats and transmembrane domains 2 [Ho...
ISLR                  0.032   immunoglobulin superfamily containing leucine-rich r...
ISLR                  0.032   immunoglobulin superfamily containing leucine-rich re...
LRRC4C                0.032   netrin-G1 ligand 
LRTM1                 0.032   leucine-rich repeats and transmembrane domains 1 [Ho...
LRIG2                 0.031   leucine-rich repeats and immunoglobulin-like domains ...
LRRC38                0.031   PREDICTED: leucine rich repeat containing 38, parti...
LRRC38                0.031   PREDICTED: leucine rich repeat containing 38 
LRRC38                0.031   PREDICTED: leucine rich repeat containing 38 
LRRC15                0.031   leucine rich repeat containing 15 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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