Guide to the Human Genome
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Name: LOC100288796 Sequence: fasta or formatted (261aa) NCBI GI: 239746237
Description:

PREDICTED: hypothetical protein XP_002343710

Not currently referenced in the text

Other entries for this name:
alt mRNA {261aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         32           2
 C cysteine            1.9          5           1
 D aspartate           1.5          4           1
 E glutamate           3.1          8           1
 F phenylalanine       0.4          1           1
 G glycine            14.6         38           3
 H histidine           0.8          2           1
 I isoleucine          0.4          1           1
 K lysine              3.4          9           1
 L leucine             5.4         14           2
 M methionine          1.9          5           1
 N asparagine          0.8          2           1
 P proline            10.3         27           2
 Q glutamine           2.3          6           1
 R arginine           13.8         36           2
 S serine             14.6         38           4
 T threonine           4.6         12           1
 V valine              4.2         11           1
 W tryptophan          3.8         10           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343710 
LOC100288796          1.000   PREDICTED: hypothetical protein 
LOC100287499          0.048   PREDICTED: hypothetical protein 
LOC100287499          0.048   PREDICTED: hypothetical protein XP_002343643 
SMAD6                 0.045   SMAD family member 6 isoform 1 
SRRM2                 0.041   splicing coactivator subunit SRm300 
TAF4                  0.035   TBP-associated factor 4 
SYN1                  0.035   synapsin I isoform Ia 
SYN1                  0.035   synapsin I isoform Ib 
LOC100289661          0.035   PREDICTED: hypothetical protein 
LOC100289661          0.035   PREDICTED: hypothetical protein XP_002343723 
SFRS16                0.033   splicing factor, arginine/serine-rich 16 
LOC100129786          0.033   PREDICTED: hypothetical protein LOC100129786 
LOC100129786          0.033   PREDICTED: hypothetical protein LOC100129786 
FLJ22184              0.033   PREDICTED: hypothetical protein LOC80164 
LOC100129786          0.033   PREDICTED: hypothetical protein LOC100129786 
FGA                   0.033   fibrinogen, alpha polypeptide isoform alpha prepropr...
FGA                   0.033   fibrinogen, alpha polypeptide isoform alpha-E preprop...
LOC728650             0.033   PREDICTED: hypothetical protein 
FAM53A                0.033   dorsal neural-tube nuclear protein 
LOC100293375          0.031   PREDICTED: hypothetical protein 
COL1A1                0.031   alpha 1 type I collagen preproprotein 
LOC100292591          0.031   PREDICTED: hypothetical protein 
LOC100287688          0.031   PREDICTED: hypothetical protein XP_002342270 
WEE1                  0.031   WEE1 tyrosine kinase isoform 1 
HRNR                  0.029   hornerin 
LOC100293268          0.029   PREDICTED: hypothetical protein 
FLJ22184              0.029   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.029   PREDICTED: hypothetical protein FLJ22184 
FLJ37078              0.029   hypothetical protein LOC222183 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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