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Search of human proteins with 169214396
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169214396 PREDICTED: hypothetical protein [Homo sapiens]
(154 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169214018 PREDICTED: hypothetical protein [Homo sapiens] 316 6e-87
gi|169214396 PREDICTED: hypothetical protein [Homo sapiens] 316 6e-87
gi|169213318 PREDICTED: hypothetical protein [Homo sapiens] 316 6e-87
gi|144953895 nidogen 2 precursor [Homo sapiens] 32 0.28
gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 31 0.48
gi|7661586 TBC1 domain family, member 29 [Homo sapiens] 31 0.48
gi|224809573 RAP1 GTPase activating protein isoform b [Homo sapi... 30 1.1
gi|5174633 receptor for egg jelly-like protein precursor [Homo s... 30 1.1
gi|127138957 zinc finger protein 537 [Homo sapiens] 29 1.8
gi|154800453 tastin isoform 1 [Homo sapiens] 29 1.8
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 28 2.4
gi|119120907 par-3 partitioning defective 3 homolog B isoform a ... 28 2.4
gi|119120903 par-3 partitioning defective 3 homolog B isoform c ... 28 2.4
gi|119120897 par-3 partitioning defective 3 homolog B isoform b ... 28 2.4
gi|239756899 PREDICTED: hypothetical protein [Homo sapiens] 28 3.1
gi|113427491 PREDICTED: hypothetical protein [Homo sapiens] 28 3.1
gi|239745902 PREDICTED: hypothetical protein [Homo sapiens] 28 3.1
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 28 3.1
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s... 28 3.1
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s... 28 3.1
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa... 28 3.1
gi|46370086 transcription factor 12 isoform c [Homo sapiens] 28 3.1
gi|46370084 transcription factor 12 isoform b [Homo sapiens] 28 3.1
gi|4507391 transcription factor 12 isoform b [Homo sapiens] 28 3.1
gi|18702331 OTU domain containing 7A [Homo sapiens] 28 3.1
gi|171916097 repetin [Homo sapiens] 28 3.1
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 28 4.1
gi|41054864 regulating synaptic membrane exocytosis 1 [Homo sapi... 28 4.1
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 28 4.1
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 28 4.1
>gi|169214018 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 316 bits (809), Expect = 6e-87
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MRFTWASPGELRLRSLSPSEVRSASASARQAHPGAALHVPAVEDGHIRPQEDVTEDPEGP 60
MRFTWASPGELRLRSLSPSEVRSASASARQAHPGAALHVPAVEDGHIRPQEDVTEDPEGP
Sbjct: 1 MRFTWASPGELRLRSLSPSEVRSASASARQAHPGAALHVPAVEDGHIRPQEDVTEDPEGP 60
Query: 61 CRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTLGFFDVRQQTA 120
CRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTLGFFDVRQQTA
Sbjct: 61 CRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTLGFFDVRQQTA 120
Query: 121 ITGKRNVSVAPSLPSDVSQLYPLKPSYDVTMASW 154
ITGKRNVSVAPSLPSDVSQLYPLKPSYDVTMASW
Sbjct: 121 ITGKRNVSVAPSLPSDVSQLYPLKPSYDVTMASW 154
>gi|169214396 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 316 bits (809), Expect = 6e-87
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MRFTWASPGELRLRSLSPSEVRSASASARQAHPGAALHVPAVEDGHIRPQEDVTEDPEGP 60
MRFTWASPGELRLRSLSPSEVRSASASARQAHPGAALHVPAVEDGHIRPQEDVTEDPEGP
Sbjct: 1 MRFTWASPGELRLRSLSPSEVRSASASARQAHPGAALHVPAVEDGHIRPQEDVTEDPEGP 60
Query: 61 CRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTLGFFDVRQQTA 120
CRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTLGFFDVRQQTA
Sbjct: 61 CRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTLGFFDVRQQTA 120
Query: 121 ITGKRNVSVAPSLPSDVSQLYPLKPSYDVTMASW 154
ITGKRNVSVAPSLPSDVSQLYPLKPSYDVTMASW
Sbjct: 121 ITGKRNVSVAPSLPSDVSQLYPLKPSYDVTMASW 154
>gi|169213318 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 316 bits (809), Expect = 6e-87
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MRFTWASPGELRLRSLSPSEVRSASASARQAHPGAALHVPAVEDGHIRPQEDVTEDPEGP 60
MRFTWASPGELRLRSLSPSEVRSASASARQAHPGAALHVPAVEDGHIRPQEDVTEDPEGP
Sbjct: 1 MRFTWASPGELRLRSLSPSEVRSASASARQAHPGAALHVPAVEDGHIRPQEDVTEDPEGP 60
Query: 61 CRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTLGFFDVRQQTA 120
CRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTLGFFDVRQQTA
Sbjct: 61 CRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTLGFFDVRQQTA 120
Query: 121 ITGKRNVSVAPSLPSDVSQLYPLKPSYDVTMASW 154
ITGKRNVSVAPSLPSDVSQLYPLKPSYDVTMASW
Sbjct: 121 ITGKRNVSVAPSLPSDVSQLYPLKPSYDVTMASW 154
>gi|144953895 nidogen 2 precursor [Homo sapiens]
Length = 1375
Score = 31.6 bits (70), Expect = 0.28
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 15 SLSPSEVRSASASARQAHPGAALHVPAV-EDGHIRPQEDVTEDPEGPCRRRDIQGLETGQ 73
SL+P E + A A+ A+PGA H+P E G+ P + G C D G E
Sbjct: 936 SLTPCEQQQRHAQAQYAYPGARFHIPQCDEQGNFLPLQ--CHGSTGFCWCVDPDGHE--- 990
Query: 74 AEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTL 110
+ G +T G G P PPT+
Sbjct: 991 ---------VPGTQTPPGSTPPHCGPSPEPTQRPPTI 1018
>gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
Length = 483
Score = 30.8 bits (68), Expect = 0.48
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 43 EDGHIRPQEDVTEDPEGPCRRRDIQGLETGQAEADAIS--SSLQGNKTTTGCRGHKDGHL 100
E+ +I +++ ++P+ P + D +G E G AE A S LQG T G +G L
Sbjct: 190 EEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAG--KETEGSL 247
Query: 101 PGSP-SIPPTLGFFDVRQQTAITGKRNVS--VAPSLPSDVSQLYP 142
S PP+ G D Q TG + + A L D + YP
Sbjct: 248 SDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYP 292
>gi|7661586 TBC1 domain family, member 29 [Homo sapiens]
Length = 150
Score = 30.8 bits (68), Expect = 0.48
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 51 EDVTEDPEGPCRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTL 110
E+ ++ GP R ++G + +++ SSLQ + RG P PP +
Sbjct: 63 EETNKETWGPATPRALKGTGRARPICESLHSSLQALTASESSRG------PSLLQTPPRV 116
Query: 111 GFFDVRQQTAITGKRNVSVAPSLPS 135
QQ G + +SV+ SLPS
Sbjct: 117 ----PGQQALSRGDKGISVSLSLPS 137
>gi|224809573 RAP1 GTPase activating protein isoform b [Homo
sapiens]
Length = 681
Score = 29.6 bits (65), Expect = 1.1
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 14/126 (11%)
Query: 26 ASARQAHPGAALHVPAVEDGHIRPQEDVTEDPEGP--CRRRDIQGLETGQAEADAISSSL 83
+++R G+A+ + VE+ I P + T GP RR G+E Q + S
Sbjct: 484 SASRFGRRGSAIGIGTVEESLIVPGKSPTRKKSGPFGSRRSSAIGIENIQEVQEKRESPP 543
Query: 84 QGNKTTTGCRGH-------KDGHLPGSPSIPPTLGFFDVRQQTAITGK---RNVSVAPSL 133
G KT GH ++ SP +P T + Q A K R+ S A S
Sbjct: 544 AGQKTPDS--GHVSQEPKSENSSTQSSPEMPTTKNRAETAAQRAEALKDFSRSSSSASSF 601
Query: 134 PSDVSQ 139
S V +
Sbjct: 602 ASVVEE 607
>gi|5174633 receptor for egg jelly-like protein precursor [Homo
sapiens]
Length = 2253
Score = 29.6 bits (65), Expect = 1.1
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 1 MRFTWA-----SPGEL----RLRSLSPSEVRSASASARQAHPGAALHVPAVEDGHIRPQE 51
+ TW+ SPG L RLR L P R AS +AR P +A P + G + E
Sbjct: 124 LSLTWSVRLPRSPGRLAWAFRLRLLGPGAARPASPAAR-VSPRSAAPGPRPQQGFVARTE 182
Query: 52 DVTEDP 57
T+ P
Sbjct: 183 CPTDGP 188
>gi|127138957 zinc finger protein 537 [Homo sapiens]
Length = 1081
Score = 28.9 bits (63), Expect = 1.8
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 15/132 (11%)
Query: 19 SEVRSASASARQAHPGAALHVPAVEDGHIRPQEDVTEDPEGPCRRRD--IQGLETGQAEA 76
S + A+ S + G + + A DG R QE+ P C+ + +E G+
Sbjct: 636 SPPKRATPSPCSSEVGEPIKMEASSDGGFRSQENSPSPPRDGCKDGSPLAEPVENGKELV 695
Query: 77 DAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTLGFFDVRQQTAITGKRNVSVAPSLPS- 135
++SSL G+ H P P + P Q+ + + PSLP+
Sbjct: 696 KPLASSLSGSTAII------TDHPPEQPFVNPLSAL-----QSVMNIHLGKAAKPSLPAL 744
Query: 136 -DVSQLYPLKPS 146
+S L+ + S
Sbjct: 745 DPMSMLFKMSNS 756
>gi|154800453 tastin isoform 1 [Homo sapiens]
Length = 778
Score = 28.9 bits (63), Expect = 1.8
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 27 SARQAHPGAALHVPAVEDGHIRPQEDVTEDPEGPCRRRDIQGLETGQAEADAISSSL 83
S+RQ P E G ++P P GPC R ++ E E ++ SSL
Sbjct: 602 SSRQEQLEVPEPCPPAEPGPLQPSTQGQSGPPGPCPRVELGASEPCTLEHRSLESSL 658
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 28.5 bits (62), Expect = 2.4
Identities = 35/123 (28%), Positives = 46/123 (37%), Gaps = 27/123 (21%)
Query: 22 RSASASARQAHPGAALHVPAVEDGHIRPQEDVTEDPEGPCRRRDIQGLETGQAEA-DAIS 80
R AS PG P E + P TE+PE E G A ++
Sbjct: 97 RGQLASPDAPGPGPRSEAPLPE---LDPLFSWTEEPE-----------ECGPASCPESAP 142
Query: 81 SSLQGNKTTTGCRGHKDGHLPGSPSIPPTLGFFDVRQQTAITGKRNVSVAPSLPSDVSQL 140
LQG+ ++ RG D SP PT G + Q +P PSD+SQ
Sbjct: 143 FRLQGSSSSHRARGEVDVF---SPFPAPTAGELALEQGPG---------SPPQPSDLSQT 190
Query: 141 YPL 143
+PL
Sbjct: 191 HPL 193
>gi|119120907 par-3 partitioning defective 3 homolog B isoform a
[Homo sapiens]
Length = 1104
Score = 28.5 bits (62), Expect = 2.4
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 71 TGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTLGF 112
T E DA S+SLQ NK+ R + G P SPS+ P +GF
Sbjct: 336 TDSPETDA-SASLQQNKSP---RVPRLGGKPSSPSLSPLMGF 373
>gi|119120903 par-3 partitioning defective 3 homolog B isoform c
[Homo sapiens]
Length = 1136
Score = 28.5 bits (62), Expect = 2.4
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 71 TGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTLGF 112
T E DA S+SLQ NK+ R + G P SPS+ P +GF
Sbjct: 336 TDSPETDA-SASLQQNKSP---RVPRLGGKPSSPSLSPLMGF 373
>gi|119120897 par-3 partitioning defective 3 homolog B isoform b
[Homo sapiens]
Length = 1143
Score = 28.5 bits (62), Expect = 2.4
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 71 TGQAEADAISSSLQGNKTTTGCRGHKDGHLPGSPSIPPTLGF 112
T E DA S+SLQ NK+ R + G P SPS+ P +GF
Sbjct: 336 TDSPETDA-SASLQQNKSP---RVPRLGGKPSSPSLSPLMGF 373
>gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 28.1 bits (61), Expect = 3.1
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 29 RQAHPGAALHVPAVEDGHIRPQEDVTEDPEGPCRRRDIQGLETGQAEADAISSSLQGNKT 88
R+ PG A PA ED R ++ + R RD+ G GQ +G +T
Sbjct: 60 RRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGAR-GQTTG---GEGREGAQT 115
Query: 89 TTGCRGHKD-GHLPGSPSIP 107
G G D P +P P
Sbjct: 116 REGKMGLPDSARRPRAPRTP 135
>gi|113427491 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 28.1 bits (61), Expect = 3.1
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 29 RQAHPGAALHVPAVEDGHIRPQEDVTEDPEGPCRRRDIQGLETGQAEADAISSSLQGNKT 88
R+ PG A PA ED R ++ + R RD+ G GQ +G +T
Sbjct: 60 RRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGAR-GQTTG---GEGREGAQT 115
Query: 89 TTGCRGHKD-GHLPGSPSIP 107
G G D P +P P
Sbjct: 116 REGKMGLPDSARRPRAPRTP 135
>gi|239745902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 28.1 bits (61), Expect = 3.1
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 29 RQAHPGAALHVPAVEDGHIRPQEDVTEDPEGPCRRRDIQGLETGQAEADAISSSLQGNKT 88
R+ PG A PA ED R ++ + R RD+ G GQ +G +T
Sbjct: 60 RRGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGAR-GQTTG---GEGREGAQT 115
Query: 89 TTGCRGHKD-GHLPGSPSIP 107
G G D P +P P
Sbjct: 116 REGKMGLPDSARRPRAPRTP 135
>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
sapiens]
Length = 448
Score = 28.1 bits (61), Expect = 3.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 75 EADAISSSLQGNKTTTGCRGHKDG--HLPGSPSIPP 108
+AD S S G ++ G GH +G H PG+PS P
Sbjct: 12 QADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIP 47
>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
sapiens]
Length = 484
Score = 28.1 bits (61), Expect = 3.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 75 EADAISSSLQGNKTTTGCRGHKDG--HLPGSPSIPP 108
+AD S S G ++ G GH +G H PG+PS P
Sbjct: 12 QADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIP 47
>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
sapiens]
Length = 485
Score = 28.1 bits (61), Expect = 3.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 75 EADAISSSLQGNKTTTGCRGHKDG--HLPGSPSIPP 108
+AD S S G ++ G GH +G H PG+PS P
Sbjct: 12 QADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIP 47
>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
sapiens]
Length = 486
Score = 28.1 bits (61), Expect = 3.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 75 EADAISSSLQGNKTTTGCRGHKDG--HLPGSPSIPP 108
+AD S S G ++ G GH +G H PG+PS P
Sbjct: 12 QADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIP 47
>gi|46370086 transcription factor 12 isoform c [Homo sapiens]
Length = 512
Score = 28.1 bits (61), Expect = 3.1
Identities = 43/166 (25%), Positives = 61/166 (36%), Gaps = 27/166 (16%)
Query: 15 SLSPSEVRSASASARQAHPGAALHVPAVEDGHIRP--QEDVTEDPEGPCRRRDIQGLETG 72
S+SP+++ ++ H G+ P V H P D G G G
Sbjct: 111 SVSPTDINTSLPPMSSFHRGSTSSSPYVAASHTPPINGSDSILGTRGNAAGSSQTGDALG 170
Query: 73 QAEA-----DAISSSLQGNKTT----------TGCRGHKDGHLPGSPSIPPTLGFFDVRQ 117
+A A D SSS N +T T G P SPS +L R
Sbjct: 171 KALASIYSPDHTSSSFPSNPSTPVGSPSPLTGTSQWPRPGGQAPSSPSYENSLHSLQSRM 230
Query: 118 Q-------TAITGKRNVSVAP--SLPSDVSQLYP-LKPSYDVTMAS 153
+ AI RN +V P SLP+ S ++ L PS++ + S
Sbjct: 231 EDRLDRLDDAIHVLRNHAVGPSTSLPAGHSDIHSLLGPSHNAPIGS 276
>gi|46370084 transcription factor 12 isoform b [Homo sapiens]
Length = 682
Score = 28.1 bits (61), Expect = 3.1
Identities = 43/166 (25%), Positives = 61/166 (36%), Gaps = 27/166 (16%)
Query: 15 SLSPSEVRSASASARQAHPGAALHVPAVEDGHIRP--QEDVTEDPEGPCRRRDIQGLETG 72
S+SP+++ ++ H G+ P V H P D G G G
Sbjct: 281 SVSPTDINTSLPPMSSFHRGSTSSSPYVAASHTPPINGSDSILGTRGNAAGSSQTGDALG 340
Query: 73 QAEA-----DAISSSLQGNKTT----------TGCRGHKDGHLPGSPSIPPTLGFFDVRQ 117
+A A D SSS N +T T G P SPS +L R
Sbjct: 341 KALASIYSPDHTSSSFPSNPSTPVGSPSPLTGTSQWPRPGGQAPSSPSYENSLHSLQSRM 400
Query: 118 Q-------TAITGKRNVSVAP--SLPSDVSQLYP-LKPSYDVTMAS 153
+ AI RN +V P SLP+ S ++ L PS++ + S
Sbjct: 401 EDRLDRLDDAIHVLRNHAVGPSTSLPAGHSDIHSLLGPSHNAPIGS 446
>gi|4507391 transcription factor 12 isoform b [Homo sapiens]
Length = 682
Score = 28.1 bits (61), Expect = 3.1
Identities = 43/166 (25%), Positives = 61/166 (36%), Gaps = 27/166 (16%)
Query: 15 SLSPSEVRSASASARQAHPGAALHVPAVEDGHIRP--QEDVTEDPEGPCRRRDIQGLETG 72
S+SP+++ ++ H G+ P V H P D G G G
Sbjct: 281 SVSPTDINTSLPPMSSFHRGSTSSSPYVAASHTPPINGSDSILGTRGNAAGSSQTGDALG 340
Query: 73 QAEA-----DAISSSLQGNKTT----------TGCRGHKDGHLPGSPSIPPTLGFFDVRQ 117
+A A D SSS N +T T G P SPS +L R
Sbjct: 341 KALASIYSPDHTSSSFPSNPSTPVGSPSPLTGTSQWPRPGGQAPSSPSYENSLHSLQSRM 400
Query: 118 Q-------TAITGKRNVSVAP--SLPSDVSQLYP-LKPSYDVTMAS 153
+ AI RN +V P SLP+ S ++ L PS++ + S
Sbjct: 401 EDRLDRLDDAIHVLRNHAVGPSTSLPAGHSDIHSLLGPSHNAPIGS 446
>gi|18702331 OTU domain containing 7A [Homo sapiens]
Length = 926
Score = 28.1 bits (61), Expect = 3.1
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 15/130 (11%)
Query: 6 ASPG--ELRLRSLSPSEVRSASASARQA-----HPGAALHVPAVEDGHIRP-------QE 51
ASPG R + P RS A ARQ+ GA A G +RP
Sbjct: 743 ASPGGGARRASASGPVPGRSPPAPARQSVIHVQASGARDEACAPAVGALRPCATYPQQNR 802
Query: 52 DVTEDPEGPCRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHK-DGHLPGSPSIPPTL 110
++ P R ++ + T ++ A A+ +L G T G HK + G ++ L
Sbjct: 803 SLSSQSYSPARAAALRTVNTVESLARAVPGALPGAAGTAGAAEHKSQTYTNGFGALRDGL 862
Query: 111 GFFDVRQQTA 120
F D TA
Sbjct: 863 EFADADAPTA 872
>gi|171916097 repetin [Homo sapiens]
Length = 784
Score = 28.1 bits (61), Expect = 3.1
Identities = 16/47 (34%), Positives = 18/47 (38%)
Query: 19 SEVRSASASARQAHPGAALHVPAVEDGHIRPQEDVTEDPEGPCRRRD 65
SE A RQ+H H E GH E EGPC +D
Sbjct: 684 SEQGHRQAQTRQSHGEGLSHWAEEEQGHQTWDRHSHESQEGPCGTQD 730
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 27.7 bits (60), Expect = 4.1
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 40 PAVEDGHIRPQEDVTED-PEGPCRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHK-D 97
P HI P +++ E P GP +GL+ G+ N TG G
Sbjct: 437 PGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQ-GEQGVKGDKGDTCFNCIGTGISGPPGQ 495
Query: 98 GHLPGSPSIPPTLGFFDVRQQTAITGKRNVSVAPSLP 134
LPG P P +LGF + + G P +P
Sbjct: 496 PGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIP 532
>gi|41054864 regulating synaptic membrane exocytosis 1 [Homo sapiens]
Length = 1692
Score = 27.7 bits (60), Expect = 4.1
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 1 MRFTWASPGELRLRSLSPSEVRSASASARQAHPGAALHVPAVEDGHIRPQEDVTEDP 57
+RFT E+ + L P R+ SAS P +LH P E G P D P
Sbjct: 1094 LRFT----DEILVSELQPFLDRARSASTNCLRPDTSLHSPERERGRWSPSLDRRRPP 1146
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 27.7 bits (60), Expect = 4.1
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 40 PAVEDGHIRPQEDVTED-PEGPCRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHK-D 97
P HI P +++ E P GP +GL+ G+ N TG G
Sbjct: 437 PGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQ-GEQGVKGDKGDTCFNCIGTGISGPPGQ 495
Query: 98 GHLPGSPSIPPTLGFFDVRQQTAITGKRNVSVAPSLP 134
LPG P P +LGF + + G P +P
Sbjct: 496 PGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIP 532
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 27.7 bits (60), Expect = 4.1
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 40 PAVEDGHIRPQEDVTED-PEGPCRRRDIQGLETGQAEADAISSSLQGNKTTTGCRGHK-D 97
P HI P +++ E P GP +GL+ G+ N TG G
Sbjct: 437 PGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQ-GEQGVKGDKGDTCFNCIGTGISGPPGQ 495
Query: 98 GHLPGSPSIPPTLGFFDVRQQTAITGKRNVSVAPSLP 134
LPG P P +LGF + + G P +P
Sbjct: 496 PGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIP 532
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,917,588
Number of Sequences: 37866
Number of extensions: 325140
Number of successful extensions: 922
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 52
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.