Guide to the Human Genome
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Name: LOC729417 Sequence: fasta or formatted (371aa) NCBI GI: 239745902
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {371aa} PREDICTED: hypothetical protein
alt prot {371aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         39           3
 C cysteine            0.8          3           1
 D aspartate           3.0         11           1
 E glutamate           6.5         24           1
 F phenylalanine       1.1          4           1
 G glycine             8.9         33           2
 H histidine           1.9          7           1
 I isoleucine          1.1          4           1
 K lysine              1.6          6           1
 L leucine             8.9         33           2
 M methionine          0.8          3           1
 N asparagine          2.7         10           1
 P proline            14.3         53           2
 Q glutamine           3.0         11           1
 R arginine           15.1         56           3
 S serine              7.0         26           1
 T threonine           6.7         25           2
 V valine              3.8         14           1
 W tryptophan          1.3          5           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729417             0.997   PREDICTED: hypothetical protein 
LOC729417             0.997   PREDICTED: hypothetical protein 
GAS2L1                0.041   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.041   growth arrest-specific 2 like 1 isoform a 
SRRM2                 0.039   splicing coactivator subunit SRm300 
LOC100291624          0.037   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.037   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.037   PREDICTED: hypothetical protein XP_002342583 
SFPQ                  0.035   splicing factor proline/glutamine rich (polypyrimidin...
FLJ37078              0.034   hypothetical protein LOC222183 
LOC643355             0.032   PREDICTED: hypothetical protein 
LOC729370             0.032   PREDICTED: hypothetical protein 
KIAA1522              0.032   hypothetical protein LOC57648 
LOC100293492          0.032   PREDICTED: hypothetical protein 
RPH3A                 0.031   rabphilin 3A homolog isoform 1 
RPH3A                 0.031   rabphilin 3A homolog isoform 2 
COL9A1                0.031   alpha 1 type IX collagen isoform 1 precursor 
COL9A1                0.031   alpha 1 type IX collagen isoform 2 precursor 
COL3A1                0.030   collagen type III alpha 1 preproprotein 
LOC100127891          0.030   PREDICTED: similar to hCG2042508 
LOC100127891          0.030   PREDICTED: similar to hCG2042508 
LOC100127891          0.030   PREDICTED: similar to hCG2042508 
MED25                 0.030   mediator complex subunit 25 
SRRM1                 0.030   serine/arginine repetitive matrix 1 
TAF4                  0.030   TBP-associated factor 4 
BAT2                  0.030   HLA-B associated transcript-2 
LOC645602             0.028   PREDICTED: hypothetical protein 
LOC645602             0.028   PREDICTED: hypothetical protein 
ANKRD33B              0.028   PREDICTED: ankyrin repeat domain 33B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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