Guide to the Human Genome
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Name: TSHZ3 Sequence: fasta or formatted (1081aa) NCBI GI: 127138957
Description:

zinc finger protein 537

Referenced in:

Stomach, Small Intestine, and Colon
Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         72           3
 C cysteine            1.7         18           1
 D aspartate           4.4         48           2
 E glutamate           7.5         81           4
 F phenylalanine       2.3         25           2
 G glycine             4.5         49           2
 H histidine           3.1         34           1
 I isoleucine          3.1         34           2
 K lysine              8.6         93           2
 L leucine             8.3         90           2
 M methionine          3.0         32           2
 N asparagine          4.5         49           3
 P proline             7.1         77           3
 Q glutamine           4.0         43           2
 R arginine            3.0         32           2
 S serine             13.6        147          11
 T threonine           7.1         77           2
 V valine              4.4         48           2
 W tryptophan          0.6          7           1
 Y tyrosine            2.3         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 537 
TSHZ1                 0.502   teashirt family zinc finger 1 
TSHZ2                 0.406   teashirt zinc finger homeobox 2 
MUC16                 0.010   mucin 16 
MAGEC1                0.010   melanoma antigen family C, 1 
ZNF66                 0.009   PREDICTED: zinc finger protein 66 
ZNF66                 0.009   PREDICTED: zinc finger protein 66 
ZNF66                 0.009   PREDICTED: zinc finger protein 66 
LOC100292052          0.009   PREDICTED: similar to hCG1773661 
LOC100287226          0.009   PREDICTED: similar to hCG1773661 
LOC100287226          0.009   PREDICTED: hypothetical protein XP_002343677 
NEFH                  0.009   neurofilament, heavy polypeptide 200kDa 
ZSCAN22               0.009   zinc finger and SCAN domain containing 22 
ZNF182                0.009   zinc finger protein 21 isoform 2 
ZNF182                0.009   zinc finger protein 21 isoform 1 
ZNF493                0.009   zinc finger protein 493 isoform 1 
ZNF493                0.009   zinc finger protein 493 isoform 3 
ZNF521                0.009   zinc finger protein 521 
ZNF208                0.009   zinc finger protein 208 
ZNF117                0.009   zinc finger protein 117 
LOC646864             0.008   PREDICTED: similar to hCG36734 
LOC646864             0.008   PREDICTED: similar to hCG36734 
LOC646864             0.008   PREDICTED: similar to hCG36734 
ZNF680                0.008   zinc finger protein 680 isoform 1 
ZNF408                0.008   zinc finger protein 408 
ZNF728                0.008   PREDICTED: zinc finger protein 728 
SETD1A                0.008   SET domain containing 1A 
ZFP2                  0.008   zinc finger protein 2 homolog 
ZNF607                0.008   zinc finger protein 607 
PRDM15                0.008   PR domain containing 15 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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