Guide to the Human Genome
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Name: LOC100131293 Sequence: fasta or formatted (154aa) NCBI GI: 169214396
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {154aa} PREDICTED: hypothetical protein
alt mRNA {154aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         14           2
 C cysteine            1.3          2           1
 D aspartate           5.8          9           1
 E glutamate           5.2          8           1
 F phenylalanine       1.9          3           2
 G glycine             8.4         13           1
 H histidine           3.2          5           1
 I isoleucine          3.2          5           1
 K lysine              2.6          4           1
 L leucine             7.1         11           1
 M methionine          1.3          2           1
 N asparagine          1.3          2           1
 P proline             9.7         15           2
 Q glutamine           5.2          8           2
 R arginine            7.8         12           3
 S serine             11.7         18           3
 T threonine           6.5         10           3
 V valine              5.8          9           1
 W tryptophan          1.3          2           1
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131293          1.000   PREDICTED: hypothetical protein 
LOC100131293          1.000   PREDICTED: hypothetical protein 
NID2                  0.024   nidogen 2 precursor 
IRX5                  0.021   iroquois homeobox protein 5 
TBC1D29               0.021   TBC1 domain family, member 29 
RAP1GAP               0.017   RAP1 GTPase activating protein isoform b 
PKDREJ                0.017   receptor for egg jelly-like protein precursor 
TSHZ3                 0.014   zinc finger protein 537 
TROAP                 0.014   tastin isoform 1 
RAB11FIP3             0.010   rab11-family interacting protein 3 isoform 1 
PARD3B                0.010   par-3 partitioning defective 3 homolog B isoform a ...
PARD3B                0.010   par-3 partitioning defective 3 homolog B isoform c ...
PARD3B                0.010   par-3 partitioning defective 3 homolog B isoform b ...
LOC729417             0.010   PREDICTED: hypothetical protein 
LOC729417             0.010   PREDICTED: hypothetical protein 
LOC729417             0.010   PREDICTED: hypothetical protein 
BRUNOL4               0.010   bruno-like 4, RNA binding protein isoform 4 
BRUNOL4               0.010   bruno-like 4, RNA binding protein isoform 3 
BRUNOL4               0.010   bruno-like 4, RNA binding protein isoform 2 
BRUNOL4               0.010   bruno-like 4, RNA binding protein isoform 1 
TCF12                 0.010   transcription factor 12 isoform c 
TCF12                 0.010   transcription factor 12 isoform b 
TCF12                 0.010   transcription factor 12 isoform b 
OTUD7A                0.010   OTU domain containing 7A 
RPTN                  0.010   repetin 
COL4A5                0.010   type IV collagen alpha 5 isoform 2 precursor 
RIMS1                 0.010   regulating synaptic membrane exocytosis 1 
COL4A5                0.010   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.010   type IV collagen alpha 5 isoform 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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