Guide to the Human Genome
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Name: LOC645971 Sequence: fasta or formatted (518aa) NCBI GI: 169213985
Description:

PREDICTED: similar to hCG2036794

Not currently referenced in the text

Other entries for this name:
alt prot {518aa} PREDICTED: similar to hCG2036794
alt prot {518aa} PREDICTED: similar to hCG2036794
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         37           2
 C cysteine            0.6          3           1
 D aspartate           4.4         23           2
 E glutamate           6.9         36           1
 F phenylalanine       3.5         18           2
 G glycine             4.6         24           2
 H histidine           2.9         15           2
 I isoleucine          2.3         12           2
 K lysine              4.4         23           1
 L leucine             9.7         50           2
 M methionine          1.4          7           1
 N asparagine          3.9         20           2
 P proline            17.6         91           4
 Q glutamine           2.9         15           1
 R arginine            4.4         23           2
 S serine              8.7         45           2
 T threonine           9.5         49           2
 V valine              3.3         17           2
 W tryptophan          0.4          2           1
 Y tyrosine            1.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2036794 
LOC645971             0.996   PREDICTED: similar to hCG2036794 
LOC645971             0.996   PREDICTED: similar to hCG2036794 
PRG4                  0.064   proteoglycan 4 isoform D 
PRG4                  0.064   proteoglycan 4 isoform C 
PRG4                  0.064   proteoglycan 4 isoform B 
PRG4                  0.064   proteoglycan 4 isoform A 
LOC284297             0.055   hypothetical protein LOC284297 
MUC2                  0.054   mucin 2 precursor 
FLJ22184              0.044   PREDICTED: hypothetical protein FLJ22184 
LOC100294420          0.043   PREDICTED: similar to mucin 2 
MLL2                  0.043   myeloid/lymphoid or mixed-lineage leukemia 2 
FLJ22184              0.040   PREDICTED: hypothetical protein LOC80164 
NACA                  0.040   nascent polypeptide-associated complex alpha subuni...
GLTSCR1               0.038   glioma tumor suppressor candidate region gene 1 [Ho...
ZNF828                0.037   zinc finger protein 828 
TTN                   0.036   titin isoform N2-A 
MDC1                  0.036   mediator of DNA-damage checkpoint 1 
FLJ22184              0.035   PREDICTED: hypothetical protein FLJ22184 
MUC17                 0.032   mucin 17 
MUC4                  0.032   mucin 4 isoform a 
MAP3K7IP3             0.031   mitogen-activated protein kinase kinase kinase 7 int...
LOC100288229          0.030   PREDICTED: hypothetical protein XP_002343606 
LOC100128719          0.030   PREDICTED: hypothetical protein, partial 
LOC100128719          0.030   PREDICTED: hypothetical protein, partial 
POLR2A                0.030   DNA-directed RNA polymerase II A 
BRD4                  0.030   bromodomain-containing protein 4 isoform long 
ZAN                   0.030   zonadhesin isoform 3 
ZAN                   0.030   zonadhesin isoform 6 
LOC100294335          0.030   PREDICTED: similar to c114 SLIT-like testicular pro...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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