Guide to the Human Genome
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Name: LOC645971 Sequence: fasta or formatted (518aa) NCBI GI: 239751846
Description:

PREDICTED: similar to hCG2036794

Not currently referenced in the text

Other entries for this name:
alt prot {518aa} PREDICTED: similar to hCG2036794
alt mRNA {518aa} PREDICTED: similar to hCG2036794
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         36           2
 C cysteine            0.6          3           1
 D aspartate           4.4         23           2
 E glutamate           6.9         36           1
 F phenylalanine       3.5         18           2
 G glycine             4.6         24           2
 H histidine           2.9         15           2
 I isoleucine          2.3         12           2
 K lysine              4.4         23           1
 L leucine             9.7         50           2
 M methionine          1.4          7           1
 N asparagine          3.9         20           2
 P proline            17.8         92           4
 Q glutamine           2.9         15           1
 R arginine            4.4         23           2
 S serine              8.7         45           2
 T threonine           9.3         48           2
 V valine              3.5         18           2
 W tryptophan          0.4          2           1
 Y tyrosine            1.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2036794 
LOC645971             1.000   PREDICTED: similar to hCG2036794 
LOC645971             0.995   PREDICTED: similar to hCG2036794 
PRG4                  0.066   proteoglycan 4 isoform D 
PRG4                  0.066   proteoglycan 4 isoform C 
PRG4                  0.066   proteoglycan 4 isoform B 
PRG4                  0.066   proteoglycan 4 isoform A 
LOC284297             0.056   hypothetical protein LOC284297 
MUC2                  0.051   mucin 2 precursor 
MLL2                  0.044   myeloid/lymphoid or mixed-lineage leukemia 2 
FLJ22184              0.043   PREDICTED: hypothetical protein FLJ22184 
LOC100294420          0.042   PREDICTED: similar to mucin 2 
MDC1                  0.040   mediator of DNA-damage checkpoint 1 
TTN                   0.039   titin isoform N2-A 
FLJ22184              0.039   PREDICTED: hypothetical protein LOC80164 
NACA                  0.038   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.037   PREDICTED: hypothetical protein FLJ22184 
GLTSCR1               0.035   glioma tumor suppressor candidate region gene 1 [Ho...
ZNF828                0.035   zinc finger protein 828 
MUC16                 0.032   mucin 16 
LOC100128719          0.032   PREDICTED: hypothetical protein, partial 
LOC100128719          0.032   PREDICTED: hypothetical protein, partial 
MUC4                  0.032   mucin 4 isoform a 
MUC17                 0.032   mucin 17 
MAP3K7IP3             0.031   mitogen-activated protein kinase kinase kinase 7 int...
LOC100288229          0.030   PREDICTED: hypothetical protein XP_002343606 
POLR2A                0.030   DNA-directed RNA polymerase II A 
ZAN                   0.030   zonadhesin isoform 3 
ZAN                   0.030   zonadhesin isoform 6 
LOC100294335          0.029   PREDICTED: similar to c114 SLIT-like testicular pro...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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