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Search of human proteins with 169210256
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
(447 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 917 0.0
gi|169210481 PREDICTED: hypothetical protein [Homo sapiens] 254 9e-68
gi|169210045 PREDICTED: hypothetical protein [Homo sapiens] 254 9e-68
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 59 9e-09
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 54 3e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 54 3e-07
gi|48762934 alpha 2 type I collagen [Homo sapiens] 53 6e-07
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 53 6e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 52 1e-06
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 50 3e-06
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 50 4e-06
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 49 9e-06
gi|19924099 synapsin I isoform Ia [Homo sapiens] 49 9e-06
gi|19924097 synapsin I isoform Ib [Homo sapiens] 49 9e-06
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 49 9e-06
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 48 2e-05
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 48 2e-05
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 48 2e-05
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 47 3e-05
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 47 3e-05
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 47 4e-05
gi|134142824 forkhead box D2 [Homo sapiens] 47 4e-05
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 47 4e-05
gi|239756163 PREDICTED: hypothetical protein [Homo sapiens] 47 5e-05
gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo ... 47 5e-05
gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo ... 47 5e-05
gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens] 47 5e-05
gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens] 47 5e-05
gi|188536004 zinc finger protein 469 [Homo sapiens] 47 5e-05
gi|91208420 bassoon protein [Homo sapiens] 47 5e-05
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 917 bits (2369), Expect = 0.0
Identities = 447/447 (100%), Positives = 447/447 (100%)
Query: 1 MAREGSVHPRERQRQKRCKSLHHWRRRYQPLPYPARFYQVLQVKRCDRSTRFHPGVLSDA 60
MAREGSVHPRERQRQKRCKSLHHWRRRYQPLPYPARFYQVLQVKRCDRSTRFHPGVLSDA
Sbjct: 1 MAREGSVHPRERQRQKRCKSLHHWRRRYQPLPYPARFYQVLQVKRCDRSTRFHPGVLSDA 60
Query: 61 RRFIQSEFQEQLCIPILIIYVYKFSSKLPPPGKCKAGGVGFRALCSGQANCFNSQYNKLV 120
RRFIQSEFQEQLCIPILIIYVYKFSSKLPPPGKCKAGGVGFRALCSGQANCFNSQYNKLV
Sbjct: 61 RRFIQSEFQEQLCIPILIIYVYKFSSKLPPPGKCKAGGVGFRALCSGQANCFNSQYNKLV 120
Query: 121 RTEHQRRGILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAG 180
RTEHQRRGILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAG
Sbjct: 121 RTEHQRRGILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAG 180
Query: 181 GTRLAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNF 240
GTRLAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNF
Sbjct: 181 GTRLAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNF 240
Query: 241 AKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEP 300
AKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEP
Sbjct: 241 AKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEP 300
Query: 301 GRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGA 360
GRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGA
Sbjct: 301 GRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGA 360
Query: 361 REAPPTSAPHPRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARPWAGKRGHRQRE 420
REAPPTSAPHPRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARPWAGKRGHRQRE
Sbjct: 361 REAPPTSAPHPRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARPWAGKRGHRQRE 420
Query: 421 PEALRALRAGQELWNLSDDILILLDQD 447
PEALRALRAGQELWNLSDDILILLDQD
Sbjct: 421 PEALRALRAGQELWNLSDDILILLDQD 447
>gi|169210481 PREDICTED: hypothetical protein [Homo sapiens]
Length = 143
Score = 254 bits (650), Expect = 9e-68
Identities = 126/142 (88%), Positives = 129/142 (90%), Gaps = 2/142 (1%)
Query: 306 PRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPP 365
PR AP R + +R + AGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPP
Sbjct: 4 PRPAP--RRASRARRGLAPWDGAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPP 61
Query: 366 TSAPHPRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARPWAGKRGHRQREPEALR 425
TSAPHPRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARPWAGKRGHRQREPEALR
Sbjct: 62 TSAPHPRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARPWAGKRGHRQREPEALR 121
Query: 426 ALRAGQELWNLSDDILILLDQD 447
ALRAGQELWNLSDDILILLDQD
Sbjct: 122 ALRAGQELWNLSDDILILLDQD 143
>gi|169210045 PREDICTED: hypothetical protein [Homo sapiens]
Length = 143
Score = 254 bits (650), Expect = 9e-68
Identities = 126/142 (88%), Positives = 129/142 (90%), Gaps = 2/142 (1%)
Query: 306 PRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPP 365
PR AP R + +R + AGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPP
Sbjct: 4 PRPAP--RRASRARRGLAPWDGAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPP 61
Query: 366 TSAPHPRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARPWAGKRGHRQREPEALR 425
TSAPHPRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARPWAGKRGHRQREPEALR
Sbjct: 62 TSAPHPRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARPWAGKRGHRQREPEALR 121
Query: 426 ALRAGQELWNLSDDILILLDQD 447
ALRAGQELWNLSDDILILLDQD
Sbjct: 122 ALRAGQELWNLSDDILILLDQD 143
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 58.9 bits (141), Expect = 9e-09
Identities = 70/252 (27%), Positives = 85/252 (33%), Gaps = 42/252 (16%)
Query: 142 PGSTRAAALPGGRDKPGPRRPRAAPGAR--SGAAASVAAAGGTRL--------AQQAPFP 191
PG A PG R GP+ P PG + SG + + G T Q P P
Sbjct: 403 PGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGP 462
Query: 192 AARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGSG 251
A +RGA +P P G F G+
Sbjct: 463 AGEEGKRGARGEP-----------------------GPTGLPGPPGERGGPGSRGFPGAD 499
Query: 252 ARAQPGGPCWAQGPPGRLPDPIPLPTRAPRT-SAGLAGVG--SGAPGEPAEPGRARAPRS 308
A P GP +G PG P P A R AGL G +G+PG P G+ P
Sbjct: 500 GVAGPKGPAGERGSPGP-AGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGP 558
Query: 309 APSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQ----GARGSWPSPRCLPSDGGAREAP 364
A P G+R +AG GP AA + G RG P + G EA
Sbjct: 559 AGQDGRP-GPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAG 617
Query: 365 PTSAPHPRRPAG 376
P P PAG
Sbjct: 618 AQGPPGPAGPAG 629
Score = 57.0 bits (136), Expect = 3e-08
Identities = 79/272 (29%), Positives = 92/272 (33%), Gaps = 56/272 (20%)
Query: 143 GSTRAAALPGGRDKPGPRRPR--AAPGARSGAAASVAAAG--GTRLAQQAPFPAARCRRR 198
G T A PG R +PGP P A P G + G G + P PA
Sbjct: 791 GPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPP 850
Query: 199 GAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGSGARAQPGG 258
G P+ +V A G R ++ P G F G+ R P G
Sbjct: 851 G----PIGNVGAPG-----------AKGARGSAGP--------PGATGFPGAAGRVGPPG 887
Query: 259 PCWAQGPPGRLPDPIPLPTRAPRTSAGLAG----VGSGAP----GEPAEPGRARAPRSAP 310
P GPPG + PR G AG VG P GE PG A P AP
Sbjct: 888 PSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPG-ADGPAGAP 946
Query: 311 SSREP------RQTKRRVGSRARAGAGAVTGPC-------PAAAQGARGSWPSPRCLPSD 357
+ P R G R G + GP P+ A G RG P P P
Sbjct: 947 GTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGP-PGPMGPPGL 1005
Query: 358 GG-----AREAPPTSAPHPRRPAGSPPALADR 384
G RE P + P R GSP A DR
Sbjct: 1006 AGPPGESGREGAPGAEGSPGRD-GSPGAKGDR 1036
Score = 50.8 bits (120), Expect = 2e-06
Identities = 80/316 (25%), Positives = 98/316 (31%), Gaps = 71/316 (22%)
Query: 138 ERRVPGSTRAAALPGGRDKP------------------GPRRPRAAPGA--RSGAAASVA 177
ER PG A LPG P GP P+ PG+ +GA +
Sbjct: 243 ERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMG 302
Query: 178 AAG--GTRLAQQAPFPAARCRRRGAIRK-----PLHDVTAAAFIVLVELLFAITSGERAA 230
G G R AP PA GA P F V GE
Sbjct: 303 PRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVG-----AKGEAGP 357
Query: 231 SAPRQESHNFAKGCAEFYGSGARAQPG--GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAG 288
PR G R +PG GP A GP G + + G+AG
Sbjct: 358 QGPRGSEG----------PQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAG 407
Query: 289 V----GSGAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTG-PCPAAAQG 343
G+ P P PG P+ +K G++ G V G P PA +G
Sbjct: 408 APGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEG 467
Query: 344 ARGS--WPSPRCLPSDGGAREAPPT-------------------SAPHPRRPAGSPPALA 382
RG+ P P LP G R P + +P P P GS P A
Sbjct: 468 KRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGS-PGEA 526
Query: 383 DREGRRSLVPQTSIQG 398
R G L + G
Sbjct: 527 GRPGEAGLPGAKGLTG 542
Score = 50.4 bits (119), Expect = 3e-06
Identities = 73/285 (25%), Positives = 89/285 (31%), Gaps = 49/285 (17%)
Query: 138 ERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFPAARCRR 197
E PG LPG R +PG P A G GA + G T A FP A +
Sbjct: 294 ENGAPGQMGPRGLPGERGRPGAPGPAGARG-NDGATGAAGPPGPTGPAGPPGFPGAVGAK 352
Query: 198 --------------RGAIRKPLHDVTAAAFIVLVELLFAITSGERAASA-PRQESHNFAK 242
+G +P A A A +G A P + N A
Sbjct: 353 GEAGPQGPRGSEGPQGVRGEPGPPGPAGA---------AGPAGNPGADGQPGAKGANGAP 403
Query: 243 GCAEFYGSGARAQPGGPCWAQGPP------------------GRLPDPIPLPTRAPRTSA 284
G A G P GP GPP G +P P+ + P A
Sbjct: 404 GIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPA 463
Query: 285 GLAGVGSGAPGEPAEPGRARAP--RSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQ 342
G G GA GEP G P R P SR G + AG GP
Sbjct: 464 GEEG-KRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGS 522
Query: 343 GARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSPPALADREGR 387
P LP G +P + P + PP A ++GR
Sbjct: 523 PGEAGRPGEAGLPGAKGLTGSPGSPGPDGKT---GPPGPAGQDGR 564
Score = 48.5 bits (114), Expect = 1e-05
Identities = 82/306 (26%), Positives = 100/306 (32%), Gaps = 52/306 (16%)
Query: 132 PLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARS--GAAASVAAAG-----GTRL 184
P ER E+ GS LPG PG G GA A G G R
Sbjct: 627 PAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERG 686
Query: 185 AQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGC 244
Q P PA RGA P +D + AP + +G
Sbjct: 687 VQGPPGPAG---PRGANGAPGNDGAKGD--------AGAPGAPGSQGAPGLQGMPGERGA 735
Query: 245 AEFYGSGARAQPGGPCWAQGPPGR-----LPDPI--PLPTRAP--RTSAGLAGVGS---- 291
A G GP A G PG+ L PI P P AP + +G +G
Sbjct: 736 AGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGA 795
Query: 292 -GAPGEPAEPGRA-----RAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPC-------- 337
GAPG+ EPG P A + G++ AG GP
Sbjct: 796 RGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGN 855
Query: 338 --PAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAG--SPPALADREGRRSLVPQ 393
A+GARGS P G A P P P AG PP A +EG + +
Sbjct: 856 VGAPGAKGARGSAGPPGATGFPGAAGRVGP---PGPSGNAGPPGPPGPAGKEGGKGPRGE 912
Query: 394 TSIQGQ 399
T G+
Sbjct: 913 TGPAGR 918
Score = 48.1 bits (113), Expect = 2e-05
Identities = 72/264 (27%), Positives = 88/264 (33%), Gaps = 35/264 (13%)
Query: 126 RRGILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARS--GAAASVAAAGGTR 183
+RG++ +R ER PG LPG +PG + P A G R G AG
Sbjct: 957 QRGVVGLPGQRGERGFPG------LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAG--- 1007
Query: 184 LAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAA-SAPRQESHNFAK 242
P + R GA P D + A E A G A AP
Sbjct: 1008 ----PPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKS 1063
Query: 243 GCAEFYGSGARAQPGGPCWA------QGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGE 296
G G A P GP A QGP G + R + G +G+ G PG
Sbjct: 1064 GDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGL-QGPPGP 1122
Query: 297 PAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPS 356
P PG + P A PR G+ + G + GP P PR
Sbjct: 1123 PGSPGE-QGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGP---------PGPRGRTG 1172
Query: 357 DGGAREAPPTSAPHPRRPAGSPPA 380
D G P P P P G P A
Sbjct: 1173 DAG--PVGPPGPPGPPGPPGPPSA 1194
Score = 44.3 bits (103), Expect = 2e-04
Identities = 80/298 (26%), Positives = 97/298 (32%), Gaps = 68/298 (22%)
Query: 141 VPGSTRAAALPGGRDKPGPRRPRAAPGARS-----GAAASV-----AAAGGTRLAQQAPF 190
+PG AA LPG + G P+ A G+ G + A A G +
Sbjct: 729 MPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSG 788
Query: 191 PAARCRRRGAI--RKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFY 248
PA RGA R A F A P + AKG
Sbjct: 789 PAGPTGARGAPGDRGEPGPPGPAGF----------------AGPPGADGQPGAKGEPGDA 832
Query: 249 GSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAG----------VG----SGAP 294
G+ A P GP GPPG + + + R SAG G VG SG
Sbjct: 833 GAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNA 892
Query: 295 GEPAEPGRA-----RAPR--SAPSSRE----------PRQTKRRVGSRARAGAGAVTGPC 337
G P PG A + PR + P+ R P K G+ AGA GP
Sbjct: 893 GPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQ 952
Query: 338 PAAAQ-------GARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAG--SPPALADREG 386
A Q G RG P G + P+ A R P G PP LA G
Sbjct: 953 GIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPG 1010
Score = 39.7 bits (91), Expect = 0.006
Identities = 42/144 (29%), Positives = 52/144 (36%), Gaps = 19/144 (13%)
Query: 251 GARAQPGGPCWAQGPPGR-----LPDPIPLP-TRAPRTSAGLAGVG-----SGAPGEPAE 299
G +PG P +GPPG LP LP + R +GL G +G GEP
Sbjct: 233 GEAGKPGRP-GERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGS 291
Query: 300 PGRARAP-----RSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCL 354
PG AP R P R G+R GA G P G G P +
Sbjct: 292 PGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAG--PPGPTGPAGPPGFPGAV 349
Query: 355 PSDGGAREAPPTSAPHPRRPAGSP 378
+ G A P + P+ G P
Sbjct: 350 GAKGEAGPQGPRGSEGPQGVRGEP 373
Score = 38.5 bits (88), Expect = 0.013
Identities = 65/212 (30%), Positives = 70/212 (33%), Gaps = 49/212 (23%)
Query: 142 PGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAG--GTRLAQQAPFPAARCRRRG 199
PG + G R + GP P APGA GA V AG G R PA G
Sbjct: 1024 PGRDGSPGAKGDRGETGPAGPPGAPGA-PGAPGPVGPAGKSGDRGETGPAGPAGPVGPVG 1082
Query: 200 AIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFA-KGCAEFYG----SGARA 254
A R P A G R E + KG F G G
Sbjct: 1083 A-RGP-----------------AGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPG 1124
Query: 255 QPG--------GPCWAQGPPGR-----------LPDPIPLPTRAPRTSAGLAG-VGS-GA 293
PG GP +GPPG LP PI P PR G AG VG G
Sbjct: 1125 SPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPP--GPRGRTGDAGPVGPPGP 1182
Query: 294 PGEPAEPGRARAPRSAPSSREPRQTKRRVGSR 325
PG P PG A +P Q K G R
Sbjct: 1183 PGPPGPPGPPSAGFDFSFLPQPPQEKAHDGGR 1214
Score = 38.1 bits (87), Expect = 0.016
Identities = 43/133 (32%), Positives = 47/133 (35%), Gaps = 31/133 (23%)
Query: 258 GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRA--RAPRSAPSSREP 315
GP GP G +P P AP G G G PGEP EPG + PR P
Sbjct: 179 GPMGPSGPRG-----LPGPPGAP----GPQGF-QGPPGEPGEPGASGPMGPRGPPGPPGK 228
Query: 316 RQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPS----------DGGAREAPP 365
G R G GP QGARG P LP DG +A P
Sbjct: 229 NGDDGEAGKPGRPGERGPPGP-----QGARG-LPGTAGLPGMKGHRGFSGLDGAKGDAGP 282
Query: 366 TSAPHPRRPAGSP 378
P+ GSP
Sbjct: 283 AG---PKGEPGSP 292
Score = 36.6 bits (83), Expect = 0.048
Identities = 69/265 (26%), Positives = 86/265 (32%), Gaps = 58/265 (21%)
Query: 143 GSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFPAARCRRRGAIR 202
G + LPG PGP+ + PG AS G + P P + G
Sbjct: 182 GPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGAS-----GPMGPRGPPGPPGKNGDDGEAG 236
Query: 203 KPLHDVTAAAFIVLVELLFAITSGER-------------AASAPRQESHNFAKGCAEFYG 249
KP GER A P + H G G
Sbjct: 237 KPGR------------------PGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKG 278
Query: 250 ----SGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSA-GLAGV-----GSGAPGEPAE 299
+G + +PG P G PG++ P LP R A G AG +GA G P
Sbjct: 279 DAGPAGPKGEPGSP-GENGAPGQM-GPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGP 336
Query: 300 PGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTG----PCPAAAQGARGSWPSPRCLP 355
G A P P + + G R G V G P PA A G G+ P P
Sbjct: 337 TGPA-GPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGN-PGADGQP 394
Query: 356 SDGGAREAPPTSA----PHPRRPAG 376
GA AP + P R P+G
Sbjct: 395 GAKGANGAPGIAGAPGFPGARGPSG 419
Score = 34.7 bits (78), Expect = 0.18
Identities = 49/174 (28%), Positives = 59/174 (33%), Gaps = 36/174 (20%)
Query: 256 PGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRAR--APRSAPSSR 313
P GP GPPGR D IP GL G G PG P PG AP+ +
Sbjct: 119 PRGPRGPAGPPGR--DGIP-------GQPGLPG-PPGPPGPPGPPGLGGNFAPQLSYGYD 168
Query: 314 EPRQTKRRVGSRARAGAGAVTGPCPAAAQGARG-----SWPSPRCLPSDGGAREAPPTSA 368
E G ++ P P G RG P P+ G P S
Sbjct: 169 E-------------KSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASG 215
Query: 369 P-HPRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARPWA----GKRGHR 417
P PR P G PP +G + +G Q + P G +GHR
Sbjct: 216 PMGPRGPPG-PPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHR 268
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 53.9 bits (128), Expect = 3e-07
Identities = 77/272 (28%), Positives = 90/272 (33%), Gaps = 68/272 (25%)
Query: 138 ERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFPAARCRR 197
E PG + PG PGP PR PG R A A G R P PA
Sbjct: 301 EAGAPGVKGESGSPGENGSPGPMGPRGLPGER--GRTGPAGAAGARGNDGQPGPAG---- 354
Query: 198 RGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGS-GARAQP 256
P V A G AP + G G+ G R +P
Sbjct: 355 ------PPGPVGPA-------------GGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP 395
Query: 257 G-----GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEP-------------- 297
G GP A G PG D IP + SAG G+ +GAPG P
Sbjct: 396 GTPGSPGPAGASGNPG--TDGIP----GAKGSAGAPGI-AGAPGFPGPRGPPGPQGATGP 448
Query: 298 -------AEPGRA-----RAPRSAPSSREPRQTKRRVGSRARAGA-GAVTGPCPAAAQGA 344
EPG A + P+ P P+ G + GA G G P G
Sbjct: 449 LGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGE 508
Query: 345 RGSWPSPRCLPSDGGAREAPPTSAPHPRRPAG 376
RG+ P R P G A P AP R P+G
Sbjct: 509 RGA-PGNRGFPGQDGL--AGPKGAPGERGPSG 537
Score = 50.1 bits (118), Expect = 4e-06
Identities = 69/268 (25%), Positives = 85/268 (31%), Gaps = 65/268 (24%)
Query: 132 PLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFP 191
P ER E+ PG + LPG PGP PG + G A G + FP
Sbjct: 649 PAGERGEQGAPGPSGFQGLPG---PPGPPGEGGKPGDQ-GVPGEAGAPGLVGPRGERGFP 704
Query: 192 AARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGSG 251
R + G + PR G G
Sbjct: 705 GERG----------------------------SPGAQGLQGPRG-----LPGTPGTDGPK 731
Query: 252 ARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAG-------VGS----GAPGEPAEP 300
+ P GP AQGPPG P R +AG+AG VG GAPG+
Sbjct: 732 GASGPAGPPGAQGPPGLQGMP------GERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGR 785
Query: 301 GRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTG----------PCPAAAQGARGSWPS 350
G P P K VG AG+ G P PA G G+
Sbjct: 786 GLT-GPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQ 844
Query: 351 PRCLPSDGGAREAPPTSAPHPRRPAGSP 378
P G A + AP P+ P+G+P
Sbjct: 845 PGAKGEQGEAGQKGDAGAPGPQGPSGAP 872
Score = 44.7 bits (104), Expect = 2e-04
Identities = 75/255 (29%), Positives = 85/255 (33%), Gaps = 48/255 (18%)
Query: 142 PGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAG-----------GTRLAQQAPF 190
PG A PG R PGP+ G + G AG G Q AP
Sbjct: 425 PGIAGAPGFPGPRGPPGPQGATGPLGPK-GQTGEPGIAGFKGEQGPKGEPGPAGPQGAPG 483
Query: 191 PAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASA----PRQESHNFAKGCAE 246
PA +RGA +P GER A P Q+ KG
Sbjct: 484 PAGEEGKRGARGEPGGVGPIGP------------PGERGAPGNRGFPGQDGLAGPKGAPG 531
Query: 247 FYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAG----VG-SGAPGEPAEPG 301
G A P G A G PGR +P R G AG VG SGAPGE PG
Sbjct: 532 ERGPSGLAGPKG---ANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPG 588
Query: 302 RARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAR 361
P + R +G GA G A +G G+ P R LP G
Sbjct: 589 -------PPGPQGARGQPGVMGFPGPKGANGEPG--KAGEKGLPGA-PGLRGLPGKDG-- 636
Query: 362 EAPPTSAPHPRRPAG 376
E P P PAG
Sbjct: 637 ETGAAGPPGPAGPAG 651
Score = 44.7 bits (104), Expect = 2e-04
Identities = 80/288 (27%), Positives = 96/288 (33%), Gaps = 60/288 (20%)
Query: 123 EHQRRGILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARS--------GAAA 174
E GI P +R + G A GGR GP P GA G A
Sbjct: 754 ERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAG 813
Query: 175 SVAAAG--GTRLAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASA 232
S A G G R P PA GA +P E A G+ A
Sbjct: 814 SAGARGAPGERGETGPPGPAGFAGPPGADGQP---------GAKGEQGEAGQKGDAGAPG 864
Query: 233 PRQESHNFAKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS- 291
P+ S G G P G AQGPPG T P + + GS
Sbjct: 865 PQGPS-----GAPGPQGPTGVTGPKGARGAQGPPG--------ATGFPGAAGRVGPPGSN 911
Query: 292 GAPGEPAEPGRARAPRSAPSSRE-PRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPS 350
G PG P PG PS ++ P+ + G RAG + G PA G +G
Sbjct: 912 GNPGPPGPPG--------PSGKDGPKGARGDSGPPGRAGEPGLQG--PAGPPGEKGE--- 958
Query: 351 PRCLPSDGGAREAPPTSAPHPRRPAGSPPALADREGRRSLVPQTSIQG 398
P D G P+ A P P G LA + G L Q +G
Sbjct: 959 ----PGDDG-----PSGAEGPPGPQG----LAGQRGIVGLPGQRGERG 993
Score = 43.1 bits (100), Expect = 5e-04
Identities = 45/137 (32%), Positives = 51/137 (37%), Gaps = 28/137 (20%)
Query: 251 GARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRA--RAPRS 308
G P GP +GPPG P AP G G G PGEP EPG + PR
Sbjct: 197 GVMQGPMGPMGPRGPPG--------PAGAP----GPQGF-QGNPGEPGEPGVSGPMGPRG 243
Query: 309 APSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAP---- 364
P G +AG GP QGARG +P LP G R P
Sbjct: 244 PPGPPGKPGDDGEAGKPGKAGERGPPGP-----QGARG-FPGTPGLPGVKGHRGYPGLDG 297
Query: 365 ---PTSAPHPRRPAGSP 378
AP + +GSP
Sbjct: 298 AKGEAGAPGVKGESGSP 314
Score = 43.1 bits (100), Expect = 5e-04
Identities = 68/261 (26%), Positives = 78/261 (29%), Gaps = 53/261 (20%)
Query: 143 GSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFPAARCRRRGAIR 202
G A G PGP+ P APG + V G R AQ P G +
Sbjct: 849 GEQGEAGQKGDAGAPGPQGPSGAPGPQG--PTGVTGPKGARGAQGPPGATGFPGAAGRVG 906
Query: 203 KPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGSGARA-QPG--GP 259
P P + KG G RA +PG GP
Sbjct: 907 PP-----------------GSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGP 949
Query: 260 CWAQGPPGRLPDPIPLPTRAPRTSAGLAG----VG----------SGAPGEPAEPGRARA 305
G G D P P GLAG VG G PG EPG+ A
Sbjct: 950 AGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGA 1009
Query: 306 P-----RSAPSSREPRQTKRRVGSRARAGAGAVTGP----CPAAAQGARGSWPSPRCLPS 356
P R P P G R G+ GP A +G RG +
Sbjct: 1010 PGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAV----- 1064
Query: 357 DGGAREAP-PTSAPHPRRPAG 376
GA AP P +P P P G
Sbjct: 1065 --GAPGAPGPPGSPGPAGPTG 1083
Score = 40.8 bits (94), Expect = 0.003
Identities = 58/239 (24%), Positives = 80/239 (33%), Gaps = 50/239 (20%)
Query: 135 EREERRVPGSTRAAALPGGRDKPGPRR---------PRAAPGAR--SGAAASVAAAGGTR 183
+R R PG PG R PG R P+ APG R SG A A G
Sbjct: 490 KRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPG 549
Query: 184 LAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKG 243
+ P AR +G + P+ + G
Sbjct: 550 RPGEPGLPGARG----------------------------LTGRPGDAGPQGKV-----G 576
Query: 244 CAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRA 303
+ G R P GP A+G PG + P P AG G+ GAPG PG+
Sbjct: 577 PSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGL-PGAPGLRGLPGKD 635
Query: 304 RAPRSA--PSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGA 360
+A P P + G+ +G + GP +G + P + +P + GA
Sbjct: 636 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGK---PGDQGVPGEAGA 691
Score = 38.9 bits (89), Expect = 0.010
Identities = 42/134 (31%), Positives = 52/134 (38%), Gaps = 11/134 (8%)
Query: 251 GARAQPGGPC--WAQGPPGRLPDPIPLPTRA---PRTSAGLAGVGSGAPGEPAEPGRARA 305
GA+ + G P G PG P P+ R R G AG +GA G +PG A
Sbjct: 297 GAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGA-AGARGNDGQPGPAGP 355
Query: 306 PRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPP 365
P + P G++ AG GP AQG RG P P GA P
Sbjct: 356 PGPVGPAGGPG-FPGAPGAKGEAGPTGARGP--EGAQGPRGE-PGTPGSPGPAGASGNPG 411
Query: 366 TSA-PHPRRPAGSP 378
T P + AG+P
Sbjct: 412 TDGIPGAKGSAGAP 425
Score = 38.1 bits (87), Expect = 0.016
Identities = 42/140 (30%), Positives = 46/140 (32%), Gaps = 20/140 (14%)
Query: 249 GSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRS 308
G A P GP G G P P + G G G G PG+ PG A
Sbjct: 636 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEG-GKPGDQGVPGEA----G 690
Query: 309 APSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSA 368
AP PR + G R G AQG +G PR LP G S
Sbjct: 691 APGLVGPRGERGFPGERGSPG-----------AQGLQG----PRGLPGTPGTDGPKGASG 735
Query: 369 PHPRRPAGSPPALADREGRR 388
P A PP L G R
Sbjct: 736 PAGPPGAQGPPGLQGMPGER 755
Score = 38.1 bits (87), Expect = 0.016
Identities = 83/322 (25%), Positives = 104/322 (32%), Gaps = 62/322 (19%)
Query: 121 RTEHQRRGILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPG-----------AR 169
R E G+ P E ++ PG++ PG PG P PG R
Sbjct: 989 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR 1048
Query: 170 SGAAASVAAAGGTRL--AQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGE 227
GAA G T A AP P G K GE
Sbjct: 1049 DGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGK------------------QGDRGE 1090
Query: 228 RAASAPRQESHNFAKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLA 287
A P S +GAR GP +G G +P + R GL
Sbjct: 1091 AGAQGPMGPSG----------PAGARGIQ-GPQGPRGDKGEAGEPGERGLKGHRGFTGLQ 1139
Query: 288 GVGSGAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGS 347
G+ G PG + G A P + PS PR VG + GA + GP
Sbjct: 1140 GL-PGPPGPSGDQG-ASGP-AGPSG--PRGPPGPVGPSGKDGANGIPGPIGP-------- 1186
Query: 348 WPSPRCLPSDGGAREAPPTSAPHPRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLA 407
P PR + G A P P P P G P D L P+ +G + Q A
Sbjct: 1187 -PGPRGRSGETG--PAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPRE--KGPDPLQYMRA 1241
Query: 408 RPWAGKRGHRQREPEALRALRA 429
AG G RQ + E L++
Sbjct: 1242 DQAAG--GLRQHDAEVDATLKS 1261
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 53.9 bits (128), Expect = 3e-07
Identities = 77/272 (28%), Positives = 90/272 (33%), Gaps = 68/272 (25%)
Query: 138 ERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFPAARCRR 197
E PG + PG PGP PR PG R A A G R P PA
Sbjct: 232 EAGAPGVKGESGSPGENGSPGPMGPRGLPGER--GRTGPAGAAGARGNDGQPGPAG---- 285
Query: 198 RGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGS-GARAQP 256
P V A G AP + G G+ G R +P
Sbjct: 286 ------PPGPVGPA-------------GGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP 326
Query: 257 G-----GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEP-------------- 297
G GP A G PG D IP + SAG G+ +GAPG P
Sbjct: 327 GTPGSPGPAGASGNPG--TDGIP----GAKGSAGAPGI-AGAPGFPGPRGPPGPQGATGP 379
Query: 298 -------AEPGRA-----RAPRSAPSSREPRQTKRRVGSRARAGA-GAVTGPCPAAAQGA 344
EPG A + P+ P P+ G + GA G G P G
Sbjct: 380 LGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGE 439
Query: 345 RGSWPSPRCLPSDGGAREAPPTSAPHPRRPAG 376
RG+ P R P G A P AP R P+G
Sbjct: 440 RGA-PGNRGFPGQDGL--AGPKGAPGERGPSG 468
Score = 50.1 bits (118), Expect = 4e-06
Identities = 69/268 (25%), Positives = 85/268 (31%), Gaps = 65/268 (24%)
Query: 132 PLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFP 191
P ER E+ PG + LPG PGP PG + G A G + FP
Sbjct: 580 PAGERGEQGAPGPSGFQGLPG---PPGPPGEGGKPGDQ-GVPGEAGAPGLVGPRGERGFP 635
Query: 192 AARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGSG 251
R + G + PR G G
Sbjct: 636 GERG----------------------------SPGAQGLQGPRG-----LPGTPGTDGPK 662
Query: 252 ARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAG-------VGS----GAPGEPAEP 300
+ P GP AQGPPG P R +AG+AG VG GAPG+
Sbjct: 663 GASGPAGPPGAQGPPGLQGMP------GERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGR 716
Query: 301 GRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTG----------PCPAAAQGARGSWPS 350
G P P K VG AG+ G P PA G G+
Sbjct: 717 GLT-GPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQ 775
Query: 351 PRCLPSDGGAREAPPTSAPHPRRPAGSP 378
P G A + AP P+ P+G+P
Sbjct: 776 PGAKGEQGEAGQKGDAGAPGPQGPSGAP 803
Score = 44.7 bits (104), Expect = 2e-04
Identities = 75/255 (29%), Positives = 85/255 (33%), Gaps = 48/255 (18%)
Query: 142 PGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAG-----------GTRLAQQAPF 190
PG A PG R PGP+ G + G AG G Q AP
Sbjct: 356 PGIAGAPGFPGPRGPPGPQGATGPLGPK-GQTGEPGIAGFKGEQGPKGEPGPAGPQGAPG 414
Query: 191 PAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASA----PRQESHNFAKGCAE 246
PA +RGA +P GER A P Q+ KG
Sbjct: 415 PAGEEGKRGARGEPGGVGPIGP------------PGERGAPGNRGFPGQDGLAGPKGAPG 462
Query: 247 FYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAG----VG-SGAPGEPAEPG 301
G A P G A G PGR +P R G AG VG SGAPGE PG
Sbjct: 463 ERGPSGLAGPKG---ANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPG 519
Query: 302 RARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAR 361
P + R +G GA G A +G G+ P R LP G
Sbjct: 520 -------PPGPQGARGQPGVMGFPGPKGANGEPG--KAGEKGLPGA-PGLRGLPGKDG-- 567
Query: 362 EAPPTSAPHPRRPAG 376
E P P PAG
Sbjct: 568 ETGAAGPPGPAGPAG 582
Score = 44.7 bits (104), Expect = 2e-04
Identities = 80/288 (27%), Positives = 96/288 (33%), Gaps = 60/288 (20%)
Query: 123 EHQRRGILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARS--------GAAA 174
E GI P +R + G A GGR GP P GA G A
Sbjct: 685 ERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAG 744
Query: 175 SVAAAG--GTRLAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASA 232
S A G G R P PA GA +P E A G+ A
Sbjct: 745 SAGARGAPGERGETGPPGPAGFAGPPGADGQP---------GAKGEQGEAGQKGDAGAPG 795
Query: 233 PRQESHNFAKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS- 291
P+ S G G P G AQGPPG T P + + GS
Sbjct: 796 PQGPS-----GAPGPQGPTGVTGPKGARGAQGPPG--------ATGFPGAAGRVGPPGSN 842
Query: 292 GAPGEPAEPGRARAPRSAPSSRE-PRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPS 350
G PG P PG PS ++ P+ + G RAG + G PA G +G
Sbjct: 843 GNPGPPGPPG--------PSGKDGPKGARGDSGPPGRAGEPGLQG--PAGPPGEKGE--- 889
Query: 351 PRCLPSDGGAREAPPTSAPHPRRPAGSPPALADREGRRSLVPQTSIQG 398
P D G P+ A P P G LA + G L Q +G
Sbjct: 890 ----PGDDG-----PSGAEGPPGPQG----LAGQRGIVGLPGQRGERG 924
Score = 43.1 bits (100), Expect = 5e-04
Identities = 45/137 (32%), Positives = 51/137 (37%), Gaps = 28/137 (20%)
Query: 251 GARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRA--RAPRS 308
G P GP +GPPG P AP G G G PGEP EPG + PR
Sbjct: 128 GVMQGPMGPMGPRGPPG--------PAGAP----GPQGF-QGNPGEPGEPGVSGPMGPRG 174
Query: 309 APSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAP---- 364
P G +AG GP QGARG +P LP G R P
Sbjct: 175 PPGPPGKPGDDGEAGKPGKAGERGPPGP-----QGARG-FPGTPGLPGVKGHRGYPGLDG 228
Query: 365 ---PTSAPHPRRPAGSP 378
AP + +GSP
Sbjct: 229 AKGEAGAPGVKGESGSP 245
Score = 43.1 bits (100), Expect = 5e-04
Identities = 68/261 (26%), Positives = 78/261 (29%), Gaps = 53/261 (20%)
Query: 143 GSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFPAARCRRRGAIR 202
G A G PGP+ P APG + V G R AQ P G +
Sbjct: 780 GEQGEAGQKGDAGAPGPQGPSGAPGPQG--PTGVTGPKGARGAQGPPGATGFPGAAGRVG 837
Query: 203 KPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGSGARA-QPG--GP 259
P P + KG G RA +PG GP
Sbjct: 838 PP-----------------GSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGP 880
Query: 260 CWAQGPPGRLPDPIPLPTRAPRTSAGLAG----VG----------SGAPGEPAEPGRARA 305
G G D P P GLAG VG G PG EPG+ A
Sbjct: 881 AGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGA 940
Query: 306 P-----RSAPSSREPRQTKRRVGSRARAGAGAVTGP----CPAAAQGARGSWPSPRCLPS 356
P R P P G R G+ GP A +G RG +
Sbjct: 941 PGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAV----- 995
Query: 357 DGGAREAP-PTSAPHPRRPAG 376
GA AP P +P P P G
Sbjct: 996 --GAPGAPGPPGSPGPAGPTG 1014
Score = 40.8 bits (94), Expect = 0.003
Identities = 58/239 (24%), Positives = 80/239 (33%), Gaps = 50/239 (20%)
Query: 135 EREERRVPGSTRAAALPGGRDKPGPRR---------PRAAPGAR--SGAAASVAAAGGTR 183
+R R PG PG R PG R P+ APG R SG A A G
Sbjct: 421 KRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPG 480
Query: 184 LAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKG 243
+ P AR +G + P+ + G
Sbjct: 481 RPGEPGLPGARG----------------------------LTGRPGDAGPQGKV-----G 507
Query: 244 CAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRA 303
+ G R P GP A+G PG + P P AG G+ GAPG PG+
Sbjct: 508 PSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGL-PGAPGLRGLPGKD 566
Query: 304 RAPRSA--PSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGA 360
+A P P + G+ +G + GP +G + P + +P + GA
Sbjct: 567 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGK---PGDQGVPGEAGA 622
Score = 38.9 bits (89), Expect = 0.010
Identities = 42/134 (31%), Positives = 52/134 (38%), Gaps = 11/134 (8%)
Query: 251 GARAQPGGPC--WAQGPPGRLPDPIPLPTRA---PRTSAGLAGVGSGAPGEPAEPGRARA 305
GA+ + G P G PG P P+ R R G AG +GA G +PG A
Sbjct: 228 GAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGA-AGARGNDGQPGPAGP 286
Query: 306 PRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPP 365
P + P G++ AG GP AQG RG P P GA P
Sbjct: 287 PGPVGPAGGPG-FPGAPGAKGEAGPTGARGP--EGAQGPRGE-PGTPGSPGPAGASGNPG 342
Query: 366 TSA-PHPRRPAGSP 378
T P + AG+P
Sbjct: 343 TDGIPGAKGSAGAP 356
Score = 38.1 bits (87), Expect = 0.016
Identities = 42/140 (30%), Positives = 46/140 (32%), Gaps = 20/140 (14%)
Query: 249 GSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRS 308
G A P GP G G P P + G G G G PG+ PG A
Sbjct: 567 GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEG-GKPGDQGVPGEA----G 621
Query: 309 APSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSA 368
AP PR + G R G AQG +G PR LP G S
Sbjct: 622 APGLVGPRGERGFPGERGSPG-----------AQGLQG----PRGLPGTPGTDGPKGASG 666
Query: 369 PHPRRPAGSPPALADREGRR 388
P A PP L G R
Sbjct: 667 PAGPPGAQGPPGLQGMPGER 686
Score = 38.1 bits (87), Expect = 0.016
Identities = 83/322 (25%), Positives = 104/322 (32%), Gaps = 62/322 (19%)
Query: 121 RTEHQRRGILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPG-----------AR 169
R E G+ P E ++ PG++ PG PG P PG R
Sbjct: 920 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGR 979
Query: 170 SGAAASVAAAGGTRL--AQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGE 227
GAA G T A AP P G K GE
Sbjct: 980 DGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGK------------------QGDRGE 1021
Query: 228 RAASAPRQESHNFAKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLA 287
A P S +GAR GP +G G +P + R GL
Sbjct: 1022 AGAQGPMGPSG----------PAGARGIQ-GPQGPRGDKGEAGEPGERGLKGHRGFTGLQ 1070
Query: 288 GVGSGAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGS 347
G+ G PG + G A P + PS PR VG + GA + GP
Sbjct: 1071 GL-PGPPGPSGDQG-ASGP-AGPSG--PRGPPGPVGPSGKDGANGIPGPIGP-------- 1117
Query: 348 WPSPRCLPSDGGAREAPPTSAPHPRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLA 407
P PR + G A P P P P G P D L P+ +G + Q A
Sbjct: 1118 -PGPRGRSGETG--PAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPRE--KGPDPLQYMRA 1172
Query: 408 RPWAGKRGHRQREPEALRALRA 429
AG G RQ + E L++
Sbjct: 1173 DQAAG--GLRQHDAEVDATLKS 1192
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 52.8 bits (125), Expect = 6e-07
Identities = 76/275 (27%), Positives = 85/275 (30%), Gaps = 41/275 (14%)
Query: 124 HQRRGILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTR 183
H G+ P R ER PG + AA G GP P P G V A G
Sbjct: 576 HGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGP-PGPDGNKGEPGVVGAVGTAG 634
Query: 184 LAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKG 243
+ + P RGA P GE+ R E N +
Sbjct: 635 PSGPSGLPG----ERGAAGIP------------------GGKGEKGEPGLRGEIGNPGR- 671
Query: 244 CAEFYGSGARAQPG-----GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAG-VGSGAPGEP 297
GAR PG GP A G G P PR S G G VG P
Sbjct: 672 ------DGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGF 725
Query: 298 AEPGRARAPRSAPSSR---EPRQTKRRVGSRARAGAGAVTGP-CPAAAQGARGSWPSPRC 353
A P A A R P+ VG GA GP P G+RG P
Sbjct: 726 AGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGM 785
Query: 354 LPSDGGAREAPPTSAPHPRRPAGSPPALADREGRR 388
G A P P G PP A +EG R
Sbjct: 786 TGFPGAAGRTGPPGPSGISGPPG-PPGPAGKEGLR 819
Score = 49.3 bits (116), Expect = 7e-06
Identities = 77/279 (27%), Positives = 95/279 (34%), Gaps = 48/279 (17%)
Query: 138 ERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFPAARCRR 197
E PG T A LPG R + G P A G+ G+ V AG A FP A
Sbjct: 206 ENGTPGQTGARGLPGERGRVGAPGPAGARGS-DGSVGPVGPAGPIGSAGPPGFPGA---- 260
Query: 198 RGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQE----------SHNFAKGCAEF 247
P ++ A +G + PR E G
Sbjct: 261 ----PGPKGEIGAVG-----------NAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGL 305
Query: 248 YGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAG----VGS-GAPGEPAEPGR 302
G+ A G A G PG P P+ + GL G GS G G EPG
Sbjct: 306 TGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGS 365
Query: 303 ARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLP-SDGGAR 361
A P+ P P + + G AG+ GP G RGS P R LP +DG A
Sbjct: 366 A-GPQGPPG---PSGEEGKRGPNGEAGSAGPPGP-----PGLRGS-PGSRGLPGADGRAG 415
Query: 362 EAPPTSAPHPRRPAG--SPPALADREGRRSLVPQTSIQG 398
P + PAG P A R G L+ + G
Sbjct: 416 VMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPG 454
Score = 48.1 bits (113), Expect = 2e-05
Identities = 85/327 (25%), Positives = 104/327 (31%), Gaps = 99/327 (30%)
Query: 141 VPGSTRAAALPGGRDKPGPRRPRAAPGARS-----GAAASVAAAG-----GTRLAQQAPF 190
+PG A LPG R PGP A GAR G A S +G G+ Q P
Sbjct: 314 LPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPG 373
Query: 191 PAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGS 250
P+ +RG +GE ++ P G GS
Sbjct: 374 PSGEEGKRG------------------------PNGEAGSAGP--------PGPPGLRGS 401
Query: 251 -GARAQPG--GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS-----GAPGEPAEPGR 302
G+R PG G GPPG P R P AG G G PG P G
Sbjct: 402 PGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGP 461
Query: 303 AR-----------------APRSA---------PSSREPRQTKRRVGSRARAG-AGAVTG 335
A P A P + P + G + AG AGA
Sbjct: 462 AGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGA 521
Query: 336 PCPAAAQGARGSWPSPRCLPSDGGAREAPP-----TSAPHPRRPAGSPPALADREGRRSL 390
P P GA+G P P+ + G + PP P P PAG + G R L
Sbjct: 522 PGPDGNNGAQGP-PGPQGV-QGGKGEQGPPGPPGFQGLPGPSGPAGE----VGKPGERGL 575
Query: 391 VPQTSIQGQNFAQLSLARPWAGKRGHR 417
+ + G AG RG R
Sbjct: 576 HGEFGLPGP-----------AGPRGER 591
Score = 43.1 bits (100), Expect = 5e-04
Identities = 52/190 (27%), Positives = 69/190 (36%), Gaps = 14/190 (7%)
Query: 239 NFAKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGV--GSGAPGE 296
N KG A G+ P G AQGPPG + P G G+ SG GE
Sbjct: 507 NGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGE 566
Query: 297 PAEPGR--ARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPC----PAAAQGARGSWPS 350
+PG P PR + G +GA TGP P+ G G+
Sbjct: 567 VGKPGERGLHGEFGLPGPAGPRGER---GPPGESGAAGPTGPIGSRGPSGPPGPDGNKGE 623
Query: 351 PRCLPSDGGAREAPPTSAPHPRRPAGSPPALADR--EGRRSLVPQTSIQGQNFAQLSLAR 408
P + + G A + P+ P R AG P ++ G R + G A ++
Sbjct: 624 PGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGA 683
Query: 409 PW-AGKRGHR 417
P AG G R
Sbjct: 684 PGPAGATGDR 693
Score = 42.0 bits (97), Expect = 0.001
Identities = 72/261 (27%), Positives = 85/261 (32%), Gaps = 37/261 (14%)
Query: 143 GSTRAAALPGGRDKPGPRRPRAAPGARS--GAAASVAAAGGTRLAQQAPFPAARCRRRGA 200
G+T G GP PR +PG R G A AG A Q P A+ R
Sbjct: 688 GATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQ---PGAKGERGAK 744
Query: 201 IRKPLHDVTAAAFIVLVELLFAITSGERAASAPR-QESHNFAKGCAEFYGSGARAQPGGP 259
K + V V A +G P G F G+ R P GP
Sbjct: 745 GPKGENGVVGPTGPVGA----AGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGP 800
Query: 260 CWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRA--RAPRSAPSSREPRQ 317
GPPG R PR G G +G G PG A + P + P
Sbjct: 801 SGISGPPGPPGPAGKEGLRGPRGDQGPVG-RTGEVGAVGPPGFAGEKGPSGEAGTAGPPG 859
Query: 318 TKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAP-------PTSAPH 370
T G + GA + G G+RG R LP GA P P A
Sbjct: 860 TP---GPQGLLGAPGILG-----LPGSRGE----RGLPGVAGAVGEPGPLGIAGPPGARG 907
Query: 371 PRRPAGSP-----PALADREG 386
P GSP P A R+G
Sbjct: 908 PPGAVGSPGVNGAPGEAGRDG 928
Score = 40.4 bits (93), Expect = 0.003
Identities = 42/127 (33%), Positives = 49/127 (38%), Gaps = 26/127 (20%)
Query: 239 NFAKGCAEFYGSGARAQPG--GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGE 296
NFA A++ G G PG G +GPPG P P + P +G PGE
Sbjct: 76 NFA---AQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGP----------AGEPGE 122
Query: 297 PAE--PGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCL 354
P + P AR P P G R G V GP QGARG +P L
Sbjct: 123 PGQTGPAGARGPAGPPGK---AGEDGHPGKPGRPGERGVVGP-----QGARG-FPGTPGL 173
Query: 355 PSDGGAR 361
P G R
Sbjct: 174 PGFKGIR 180
Score = 35.8 bits (81), Expect = 0.081
Identities = 72/279 (25%), Positives = 83/279 (29%), Gaps = 35/279 (12%)
Query: 120 VRTEHQRRGILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAA 179
++ E R+G R ER PG G PGP P PG AA
Sbjct: 25 LQEETVRKGPAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGK 84
Query: 180 GGTRLAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHN 239
G P P RG A F +GE P Q
Sbjct: 85 G----VGLGPGPMGLMGPRGP---------PGAAGAPGPQGFQGPAGE--PGEPGQTGPA 129
Query: 240 FAKGCAEFYGS-------GARAQPG-----GPCWAQGPPGRLPDPIPLPTRAPRTSAGLA 287
A+G A G G +PG GP A+G PG P R GL
Sbjct: 130 GARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLK 189
Query: 288 GV--GSGAPGEPAEPGRARAP-----RSAPSSREPRQTKRRVGSRARAGAGAVTGPC-PA 339
G G GEP PG P R P R G+R G+ GP P
Sbjct: 190 GQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPI 249
Query: 340 AAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSP 378
+ G G +P G A P PR G P
Sbjct: 250 GSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLP 288
Score = 35.0 bits (79), Expect = 0.14
Identities = 31/86 (36%), Positives = 34/86 (39%), Gaps = 22/86 (25%)
Query: 249 GSGARAQPGGPCWAQGPPGR-----LPDPI-PLPTRAPRTSAGLAGVGSGAPGEPAEPG- 301
GS A P GP GP G+ P + P R P+ G AG G PG P PG
Sbjct: 1045 GSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAG-PPGPPGPPGPPGV 1103
Query: 302 --------------RARAPRSAPSSR 313
RA PRSAPS R
Sbjct: 1104 SGGGYDFGYDGDFYRADQPRSAPSLR 1129
Score = 33.1 bits (74), Expect = 0.53
Identities = 39/144 (27%), Positives = 44/144 (30%), Gaps = 45/144 (31%)
Query: 251 GARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRSAP 310
G R + G P GPPGR D PT P G PG P PG
Sbjct: 39 GPRGERGPP----GPPGR--DGEDGPTGPP-----------GPPGPPGPPG--------- 72
Query: 311 SSREPRQTKRRVGSRARA---GAGAVTGPCPAAAQGARG-----SWPSPRCLPSDGGARE 362
+G A G G GP P G RG P P+ G
Sbjct: 73 -----------LGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPG 121
Query: 363 APPTSAPHPRRPAGSPPALADREG 386
P + P R PP A +G
Sbjct: 122 EPGQTGPAGARGPAGPPGKAGEDG 145
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 52.8 bits (125), Expect = 6e-07
Identities = 72/270 (26%), Positives = 91/270 (33%), Gaps = 28/270 (10%)
Query: 142 PGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQA--PFPAARCRRRG 199
PG + LPG R PG R PR P GA V G L + P P+ RG
Sbjct: 1322 PGLKGSPGLPGPRGDPGERGPR-GPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRG 1380
Query: 200 AIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESH-NFAKGCAEFYGSGARAQPGG 258
PL D L G+R P A G G P G
Sbjct: 1381 ----PLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQG 1436
Query: 259 PCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSREPRQT 318
P GPPG+ + AP G PG+P PG + PR P + P+
Sbjct: 1437 PV---GPPGKKGEKGDSEDGAP-----------GLPGQPGSPGE-QGPRGPPGAIGPKGD 1481
Query: 319 KRRVGSRARAGAGAVTG-PCPAAAQGARGSWPSPRCLPSDG----GAREAPPTSAPHPRR 373
+ G AG G P PA ++G G P +G R+ P
Sbjct: 1482 RGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGD 1541
Query: 374 PAGSPPALADREGRRSLVPQTSIQGQNFAQ 403
PA PA+A +G + V +G Q
Sbjct: 1542 PAVVGPAVAGPKGEKGDVGPAGPRGATGVQ 1571
Score = 52.4 bits (124), Expect = 8e-07
Identities = 75/294 (25%), Positives = 96/294 (32%), Gaps = 38/294 (12%)
Query: 123 EHQRRGILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGT 182
E RG + + +R PG A G R PGP R PG VA G
Sbjct: 1466 EQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPG--------VAGRPGA 1517
Query: 183 RLAQQAPFPAARCRRRGAIRKPLHDVTAAAFIV--LVELLFAITSGERAASA-------- 232
+ + P P R +G +P + E +G R A+
Sbjct: 1518 KGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPP 1577
Query: 233 -------PRQESHNFAKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAG 285
P + +G G GP +G PGR P P+ R G
Sbjct: 1578 GLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVG 1637
Query: 286 LAGVGSGAPGEPAEPGRA--RAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQG 343
G G PG+P PG+A R R AP R P K G G P + +G
Sbjct: 1638 EKG-DEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNG--SPGSSGPKG 1694
Query: 344 ARGS----WPSPRCLPSDGGAR---EAPPTSAPHPRRPAGSPPALADREGRRSL 390
RG P R + + GAR E PR P G P L G R +
Sbjct: 1695 DRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGD-PGLPGAPGERGI 1747
Score = 45.1 bits (105), Expect = 1e-04
Identities = 52/189 (27%), Positives = 68/189 (35%), Gaps = 44/189 (23%)
Query: 270 PDPIPLPTRAPRTSAGLAGVGS-----GAPGEPAEPGR--ARAPRSAPSSREPRQTKRRV 322
P P P P P+ G G G PG+P PGR A P+ P S + +
Sbjct: 1242 PRPEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFP 1301
Query: 323 GSRARAGA-GAVTGPCPAAAQGARGS--WPSPRCLPSDGGAR---------------EAP 364
G+ R G+ G P A G +GS P PR P + G R E P
Sbjct: 1302 GADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGP 1361
Query: 365 ----------PTSAPHPRRPAGSPPALADREGRRSL--VPQTSIQGQNFAQLSLARPWAG 412
P+ P PR P G P G R +P T+++G + P G
Sbjct: 1362 GLPGRKGDPGPSGPPGPRGPLGDP-------GPRGPPGLPGTAMKGDKGDRGERGPPGPG 1414
Query: 413 KRGHRQREP 421
+ G EP
Sbjct: 1415 EGGIAPGEP 1423
Score = 43.5 bits (101), Expect = 4e-04
Identities = 50/178 (28%), Positives = 63/178 (35%), Gaps = 34/178 (19%)
Query: 233 PRQESHNFAKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPT-------------RA 279
P ++ N + G + G R +PG P GPPGRL D P R
Sbjct: 1678 PGEDGRNGSPGSSG--PKGDRGEPGPP----GPPGRLVDTGPGAREKGEPGDRGQEGPRG 1731
Query: 280 PRTSAGLAGVGS--------GAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAG 331
P+ GL G G PG +PG R P R P R G + GA
Sbjct: 1732 PKGDPGLPGAPGERGIEGFRGPPGPQGDPG-VRGPAGEKGDRGPPGLDGRSGLDGKPGAA 1790
Query: 332 AVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPH--PRRPA-GSPPALADREG 386
+GP AA + P LP G + P S P P +P P L + G
Sbjct: 1791 GPSGPNGAAGKAGD---PGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNG 1845
Score = 39.3 bits (90), Expect = 0.007
Identities = 47/165 (28%), Positives = 58/165 (35%), Gaps = 34/165 (20%)
Query: 253 RAQPGGPCWAQGPPGRL----------------------PDPIPLPTRAPRTSAGLAGVG 290
R P G QGPPG+ P + L R P +GLAG
Sbjct: 1977 RRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAG-E 2035
Query: 291 SGAPGEPAEPGRARAPRSA--PSSREPRQTKRRVGSRARAGAGAVTG-PCPAAAQGARGS 347
G PG P PGRA A P R R K G + R G + G P P G + S
Sbjct: 2036 PGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVS 2095
Query: 348 WPSP-------RCLPSDGGAREAPPTSAPH-PRRPAGSPPALADR 384
P + P GA+ P ++ P+ G P DR
Sbjct: 2096 VDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDR 2140
Score = 38.1 bits (87), Expect = 0.016
Identities = 73/298 (24%), Positives = 98/298 (32%), Gaps = 52/298 (17%)
Query: 128 GILRPLAEREERRVPGSTRAAALPGG------RDKPGPRRPRA-----APGARSGAAASV 176
G+ P+ E+ ++ PG PG R +PGP P PGAR
Sbjct: 1664 GVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGD 1723
Query: 177 AAAGGTRLAQQAPFPAARCRRRG--AIRKPLHDVTAAAFIVLVELLFAITSGERAASAPR 234
G R + P RG R P G+ P
Sbjct: 1724 RGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGP-----------------QGDPGVRGPA 1766
Query: 235 QESHNFAKGCAEFYG-SGARAQPG--GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS 291
E + +G G SG +PG GP G G+ DP R GL G S
Sbjct: 1767 GEKGD--RGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGP-S 1823
Query: 292 GAPGEPAEPGRARAPRSAPSSREPRQTKR--RVGSRARAGAGAVTGPCPAAAQGARGSWP 349
G PG P +PG P + EP R G + +GA G G +G
Sbjct: 1824 GPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREG-----RDGPKGERG 1878
Query: 350 SPRCLPSDGGAREAPPTSAP---HPRRPAGSPPALADR-----EGRRSLVPQTSIQGQ 399
+P L G P P P P G+ P DR +G + L + ++G+
Sbjct: 1879 APGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPK-GDRGETGSKGEQGLPGERGLRGE 1935
Score = 38.1 bits (87), Expect = 0.016
Identities = 47/142 (33%), Positives = 50/142 (35%), Gaps = 32/142 (22%)
Query: 251 GARAQPG--GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGV----------GSGAP---G 295
G QPG G GPPGR P PL P S G G G G P G
Sbjct: 2413 GEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRG 2472
Query: 296 EPAEPG-----------RARAPRSAPSSREPRQTKRRVGSRARAG----AGAVTG-PCPA 339
E EPG R P SR R K VGS G + + G P P
Sbjct: 2473 ERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPR 2532
Query: 340 AAQGARGSWPSPRCLPSDGGAR 361
A+G G PR L D G R
Sbjct: 2533 GAKGDMGE-RGPRGLDGDKGPR 2553
Score = 33.9 bits (76), Expect = 0.31
Identities = 71/263 (26%), Positives = 87/263 (33%), Gaps = 46/263 (17%)
Query: 138 ERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFPAARCRR 197
ER + G L G R PGP PG GA AG + P
Sbjct: 2157 ERGMAGPEGKPGLQGPRGPPGPVGGHGDPGP-PGAPGLAGPAGPQGPSGLKGEPG----E 2211
Query: 198 RGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGS----GAR 253
G + L T A + + + + P Q G G+ G R
Sbjct: 2212 TGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDR 2271
Query: 254 AQPGGPCWAQGPPGRLPDPI-----PLPTRAP-RTSAGLAGV--GSGAPGEPA-----EP 300
PG P G PG LP P+ P PT AP + GL G GAPG A EP
Sbjct: 2272 GSPGVP----GSPG-LPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEP 2326
Query: 301 GRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGA 360
G A+ R P R + G RAG P G +G+ P P+ G
Sbjct: 2327 G-AKGDRGLPGPRGEK------GEAGRAGE-----PGDPGEDGQKGA-PGPK------GF 2367
Query: 361 REAPPTSAPHPRRPAGSPPALAD 383
+ P P P G P D
Sbjct: 2368 KGDPGVGVPGSPGPPGPPGVKGD 2390
Score = 33.1 bits (74), Expect = 0.53
Identities = 72/283 (25%), Positives = 87/283 (30%), Gaps = 50/283 (17%)
Query: 142 PGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQA--PFPAARCRRRG 199
PG + G KPG + PR PG G G LA A P+ G
Sbjct: 2152 PGLPGERGMAGPEGKPGLQGPRGPPGP-VGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPG 2210
Query: 200 AIRKP---LHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGS----GA 252
P L T A + + + + P Q G G+ G
Sbjct: 2211 ETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGD 2270
Query: 253 RAQPGGPCWAQGPPGRLPDPI-----PLPTRAPRTSA--------------GLAGVGSGA 293
R PG P G PG LP P+ P PT AP + GLAG G
Sbjct: 2271 RGSPGVP----GSPG-LPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGE 2325
Query: 294 P------------GEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAA 341
P GE E GRA P P + G + G G P P
Sbjct: 2326 PGAKGDRGLPGPRGEKGEAGRAGEP-GDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGP 2384
Query: 342 QGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSPPALADR 384
G +G P LP G P + PR G P +R
Sbjct: 2385 PGVKGDLGLPG-LPGAPGVVGFPGQTG--PRGEMGQPGPSGER 2424
Score = 33.1 bits (74), Expect = 0.53
Identities = 46/149 (30%), Positives = 53/149 (35%), Gaps = 24/149 (16%)
Query: 251 GARAQPGGPCW-AQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAP--- 306
G + PGG G PG D LP PR G AG +G PG+P E G+ AP
Sbjct: 2310 GEKGAPGGLAGDLVGEPGAKGDR-GLP--GPRGEKGEAG-RAGEPGDPGEDGQKGAPGPK 2365
Query: 307 ----------RSAPSSREPRQTKRRVGSRARAGAGAVTG-PCPAAAQGARGSWPSP---R 352
+P P K +G GA V G P +G G P P R
Sbjct: 2366 GFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQ-PGPSGER 2424
Query: 353 CLPSDGGAREAP-PTSAPHPRRPAGSPPA 380
L G P P P P G P A
Sbjct: 2425 GLAGPPGREGIPGPLGPPGPPGSVGPPGA 2453
Score = 31.2 bits (69), Expect = 2.0
Identities = 44/168 (26%), Positives = 55/168 (32%), Gaps = 48/168 (28%)
Query: 264 GPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAP-----------RSAPSS 312
GPPGR GLAG G GEP PG++ AP R
Sbjct: 2647 GPPGR---------------PGLAG-HKGEMGEPGVPGQSGAPGKEGLIGPKGDRGFDGQ 2690
Query: 313 REPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPR 372
P+ + G R G G GP +DG A P + PR
Sbjct: 2691 PGPKGDQGEKGERGTPGIGGFPGPS-----------------GNDGSAGPPGPPGSVGPR 2733
Query: 373 RPAGSPPALADR--EGRRSLVPQTSIQGQNFAQLSLARPW-AGKRGHR 417
P G +R G R +V + G + RP AG RG +
Sbjct: 2734 GPEGLQGQKGERGPPGER-VVGAPGVPGAPGERGEQGRPGPAGPRGEK 2780
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 51.6 bits (122), Expect = 1e-06
Identities = 72/262 (27%), Positives = 84/262 (32%), Gaps = 48/262 (18%)
Query: 135 EREERRVPGSTRAAALPGGRDKPGPRRPRAAPG--ARSGAAASVAAAG--GTRLAQQAPF 190
E+ E PG LPG PGP PR APG R G + A G G R + P
Sbjct: 274 EKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPG 333
Query: 191 PAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGS 250
P G F + G + P A
Sbjct: 334 PPGPPGTAG---------------------FPGSPGAKGEVGP-------AGSPGSNGAP 365
Query: 251 GARAQPG--GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS--GAPGEPAEPGRARAP 306
G R +PG G AQGPPG + AG+ G GA G P G AP
Sbjct: 366 GQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAP 425
Query: 307 RSAPSSREPRQ--TKRRVGSRARAGAGAVTG-PCPAAAQGARGS--WPSPRCLPSDGGAR 361
+ EP + K G R G + G P G GS P LP G R
Sbjct: 426 GLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGER 485
Query: 362 EAP-------PTSAPHPRRPAG 376
AP P P + PAG
Sbjct: 486 GAPGFRGPAGPNGIPGEKGPAG 507
Score = 51.6 bits (122), Expect = 1e-06
Identities = 69/270 (25%), Positives = 84/270 (31%), Gaps = 32/270 (11%)
Query: 132 PLAEREERRVPGSTRA---------AALPGGRDKPGPRRPRAAPGARSGAAAS-VAAAGG 181
P ER E +PG A PG PG R APG R A + + G
Sbjct: 445 PRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKG 504
Query: 182 TRLAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERA-ASAPRQESHNF 240
+ AP PA RGA +P D G R +P +
Sbjct: 505 PAGERGAPGPAG---PRGAAGEPGRDGVPGG------------PGMRGMPGSPGGPGSDG 549
Query: 241 AKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEP 300
G G R P GP +G PG + P P G G G G PG P
Sbjct: 550 KPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERG-GPGGPGPQGPP 608
Query: 301 GR--ARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDG 358
G+ P+ P P K G G + G + + P P+ D
Sbjct: 609 GKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPK---GDA 665
Query: 359 GAREAPPTSAPHPRRPAGSPPALADREGRR 388
GA AP PP LA G R
Sbjct: 666 GAPGAPGGKGDAGAPGERGPPGLAGAPGLR 695
Score = 51.2 bits (121), Expect = 2e-06
Identities = 67/248 (27%), Positives = 81/248 (32%), Gaps = 40/248 (16%)
Query: 135 EREERRVPGSTRAAALPGGRDKPGPRRPRAAPGAR-SGAAASVAAAGGTRLAQQAPFPAA 193
ER E PG PG +PG + R APG + G VA G P P
Sbjct: 799 ERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQG 858
Query: 194 RCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGSGAR 253
RG+ G AA P A+G GS
Sbjct: 859 VKGERGS-----------------------PGGPGAAGFPG------ARGLPGPPGSNGN 889
Query: 254 AQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGV--GSGAPGEPAEPGRARAPRSAPS 311
P GP G PG+ P P S G++G +G PGE PG A+ P AP
Sbjct: 890 PGPPGP---SGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPG-AQGPPGAPG 945
Query: 312 SREPRQTKRRVGSRARAGAGAVTGPCPA-AAQGARGSWPSPRCLPSDGGAREAPPTSAPH 370
P G+R AG + GP + QG +G P G P P
Sbjct: 946 ---PLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPG 1002
Query: 371 PRRPAGSP 378
AG P
Sbjct: 1003 LAGTAGEP 1010
Score = 47.4 bits (111), Expect = 3e-05
Identities = 65/252 (25%), Positives = 75/252 (29%), Gaps = 43/252 (17%)
Query: 141 VPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFPAARCRRRGA 200
+PG A L G R PGP APG R GA G A+ P P G
Sbjct: 403 IPG---APGLMGARGPPGPAGANGAPGLRGGAGEP-----GKNGAKGEPGPRGERGEAGI 454
Query: 201 IRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGSGARAQPGGPC 260
P + +P + N G A G+ P GP
Sbjct: 455 PGVP-----------------GAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPN 497
Query: 261 WA---QGPPGRLPDPIPLPTRAPRTSAGLAGVGSGA-----PGEPAEPGRARAPRSAPSS 312
+GP G P P R G GV G PG P PG P S
Sbjct: 498 GIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQ 557
Query: 313 REPRQTKRRVGSRARAGAGAVTGPCPAAAQGARG--------SWPSPRCLPSDGGAREAP 364
E + S R G + P P GA G P P+ P G E
Sbjct: 558 GESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNG--ETG 615
Query: 365 PTSAPHPRRPAG 376
P P P P G
Sbjct: 616 PQGPPGPTGPGG 627
Score = 47.0 bits (110), Expect = 4e-05
Identities = 73/282 (25%), Positives = 91/282 (32%), Gaps = 60/282 (21%)
Query: 123 EHQRRGILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGT 182
E+ + G P + PG A PG R PG APG R GA G
Sbjct: 652 ENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLA---GAPGLRGGAGPPGPEGG-- 706
Query: 183 RLAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAA-SAPRQESHNFA 241
+ A P P G P GER +P +
Sbjct: 707 KGAAGPPGPPGAAGTPGLQGMP---------------------GERGGLGSPGPKGDKGE 745
Query: 242 KGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS--GAPGEPAE 299
G G + P GP GPPG P + + GL G+ G+PGE E
Sbjct: 746 PGGPGADGVPGKDGPRGPTGPIGPPGPAGQP---GDKGEGGAPGLPGIAGPRGSPGERGE 802
Query: 300 ---PGRARAPRSAPSSREPRQTKRR--VGSRARAGAGAVTGPC----------PAAAQGA 344
PG A P + + EP R G + G V GP P +G
Sbjct: 803 TGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGE 862
Query: 345 RGS--------WPSPRCLPSDGGAREAPPTSAPHPRRPAGSP 378
RGS +P R LP G+ P P P+GSP
Sbjct: 863 RGSPGGPGAAGFPGARGLPGPPGS-----NGNPGPPGPSGSP 899
Score = 46.2 bits (108), Expect = 6e-05
Identities = 53/154 (34%), Positives = 61/154 (39%), Gaps = 22/154 (14%)
Query: 249 GSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRS 308
G G R + G P A G PG P P+ P +G G SG G PG A + R
Sbjct: 1030 GKGDRGENGSP-GAPGAPGHPGPPGPV---GPAGKSGDRGE-SGPAGPAGAPGPAGS-RG 1083
Query: 309 APSSREPRQTKRRVGSRARAG----------AGAVTGPCPAAAQGARGSWPSPRCLPSDG 358
AP + PR K G R AG GA P PA QGA GS P P P
Sbjct: 1084 APGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGS-PGP-AGPRGP 1141
Query: 359 GAREAPP---TSAPHPRRPAGSPPALADREGRRS 389
PP ++ HP P G P +R R S
Sbjct: 1142 VGPSGPPGKDGTSGHP-GPIGPPGPRGNRGERGS 1174
Score = 45.8 bits (107), Expect = 8e-05
Identities = 68/250 (27%), Positives = 82/250 (32%), Gaps = 41/250 (16%)
Query: 150 LPGGRDKPGPRRPRAA---PGAR--SGAAASVAAAGGTRLAQQAPFPAARCRRRGAIRKP 204
+PG R PGP+ + PGA SG G LA A P R G+ P
Sbjct: 964 MPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPG-RDGNPGSDGLP 1022
Query: 205 LHDVTAAAFIVLVELLFAITSGER-------AASAPRQESHNFAKGCAEFYGSGARAQPG 257
D + G+R A AP G A G + P
Sbjct: 1023 GRDGSPGG------------KGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPA 1070
Query: 258 GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVG--SGAPGEPAEPGRARAPRSAPSSREP 315
GP A GP G P P R + G G G G P PG AP S P
Sbjct: 1071 GPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPG-------APGSPGP 1123
Query: 316 RQTKRRVGSRARAGAGAVTGPC-PAAAQGARG-----SWPSPRCLPSDGGAREAP-PTSA 368
+ +GS AG GP P G G P PR + G+ +P
Sbjct: 1124 AGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQ 1183
Query: 369 PHPRRPAGSP 378
P P P G+P
Sbjct: 1184 PGPPGPPGAP 1193
Score = 45.4 bits (106), Expect = 1e-04
Identities = 50/173 (28%), Positives = 63/173 (36%), Gaps = 12/173 (6%)
Query: 256 PGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSREP 315
P P QGP G DP P G+ G G+PG P PG + + P + P
Sbjct: 95 PTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQ-PGSPGSPGPPGICESCPTGPQNYSP 153
Query: 316 RQTKRRVGSRARAG--------AGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTS 367
+ V S G AG P P G GS SP G +A P+
Sbjct: 154 QYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSG 213
Query: 368 APHPRRPAG-SPPALADRE-GRRSLVPQTSIQGQNFAQLSLARP-WAGKRGHR 417
P P G S PA D E GR + + G + P + G +GHR
Sbjct: 214 PPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHR 266
Score = 43.9 bits (102), Expect = 3e-04
Identities = 57/208 (27%), Positives = 70/208 (33%), Gaps = 45/208 (21%)
Query: 138 ERRVPGSTRAAALPGGRDKPGPRRPRAAPGAR-SGAAASVAAAGGTRLAQQAPFPAARCR 196
+R GS A PG PGP P G R A A A G ++ AP P
Sbjct: 1033 DRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRG 1092
Query: 197 RRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASA----------PRQESHNFAKGCAE 246
+G +GER A+ P G
Sbjct: 1093 DKG------------------------ETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQG 1128
Query: 247 FYGSGARAQPGGPCWAQGPPGR---LPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRA 303
GS A P GP GPPG+ P P+ PR + G G G+PG P +PG
Sbjct: 1129 AIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERG-SEGSPGHPGQPG-- 1185
Query: 304 RAPRSAPSSREPRQTKRRVGSRARAGAG 331
P P + P VG+ A AG G
Sbjct: 1186 --PPGPPGA--PGPCCGGVGAAAIAGIG 1209
Score = 40.0 bits (92), Expect = 0.004
Identities = 47/163 (28%), Positives = 55/163 (33%), Gaps = 33/163 (20%)
Query: 250 SGARAQPG--GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGV-----------GSGAPGE 296
+G +PG G A G PG D R P AG G+ G GA G
Sbjct: 653 NGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGP 712
Query: 297 PAEPGRARAP--------RSAPSSREPRQTKRRVGSRA----------RAGAGAVTGPCP 338
P PG A P R S P+ K G R G + P P
Sbjct: 713 PGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGP 772
Query: 339 AAAQGARGSWPSPRCLPSDGGAREAP-PTSAPHPRRPAGSPPA 380
A G +G +P LP G R +P P PAG P A
Sbjct: 773 AGQPGDKGEGGAPG-LPGIAGPRGSPGERGETGPPGPAGFPGA 814
Score = 38.5 bits (88), Expect = 0.013
Identities = 51/198 (25%), Positives = 61/198 (30%), Gaps = 20/198 (10%)
Query: 233 PRQESHNFAKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSG 292
P H + G + G GP GPPG + P G G G
Sbjct: 185 PGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPG-ERG 243
Query: 293 APGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTG----------PCPAAAQ 342
PG P G A P P + R R G + GA + G P P +
Sbjct: 244 LPGPPGIKGPAGIP-GFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPR 302
Query: 343 GARGSWPSPRCLPSDGGAR----EAPPTSAPHPRRPAGSPPALADREGRRSLVPQTSIQG 398
GA G P LP GAR P P P G+ G + V G
Sbjct: 303 GAPGERGRPG-LPGAAGARGNDGARGSDGQPGPPGPPGT-AGFPGSPGAKGEVGPAGSPG 360
Query: 399 QNFAQLSLARPWAGKRGH 416
N A P G +GH
Sbjct: 361 SNGAPGQRGEP--GPQGH 376
Score = 34.3 bits (77), Expect = 0.24
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 132 PLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSG--AAASVAAAGGTRLAQQAP 189
P R ER GS PG +PGP P APG G AA++A GG + AP
Sbjct: 1165 PRGNRGERGSEGS------PGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGGFAP 1218
Query: 190 F 190
+
Sbjct: 1219 Y 1219
Score = 33.9 bits (76), Expect = 0.31
Identities = 34/103 (33%), Positives = 37/103 (35%), Gaps = 4/103 (3%)
Query: 285 GLAGVGSGAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTG-PCPAAAQG 343
GL G +G PGE PG PR AP R G+R GA G P P G
Sbjct: 282 GLKGE-NGLPGENGAPG-PMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPG 339
Query: 344 ARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSPPALADREG 386
G SP G A AP R G P A +G
Sbjct: 340 TAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPG-PQGHAGAQG 381
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 50.4 bits (119), Expect = 3e-06
Identities = 72/273 (26%), Positives = 100/273 (36%), Gaps = 53/273 (19%)
Query: 142 PGSTRAAALPGGRDKP--GPRRPRAAP----------GARSGAAASVAAAGGTRLAQQAP 189
PGSTR+ P P G PR AP G++ + + G + + + P
Sbjct: 495 PGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSEASKKAGPKSSPRKP 554
Query: 190 FP-----AAR------CRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESH 238
P AAR R + R+P +VL F +S+PR S
Sbjct: 555 VPLRPGKAARDVPLSDLTTRPSPRQPQPSQQTTPALVLAPAQFL-------SSSPRPTSS 607
Query: 239 NFA----KGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLP-TRAPRTSAGLAGVGSGA 293
++ G F P G C GPPG LP +P R PR G G G
Sbjct: 608 GYSIFHLAGSTPFPLLMGPPGPKGDCGLPGPPG-LPGLPGIPGARGPRGPPGPYG-NPGL 665
Query: 294 PGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTG-PCPAAAQGARGSWPSPR 352
PG P G+ P +P K G++ G ++G P P +G +G +P P
Sbjct: 666 PGPPGAKGQKGDPGLSPG-------KAHDGAKGDMGLPGLSGNPGPPGRKGHKG-YPGPA 717
Query: 353 CLPSDGG--AREAPPTSAPHPRR-----PAGSP 378
P + G E P + +P R P G P
Sbjct: 718 GHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDP 750
Score = 40.0 bits (92), Expect = 0.004
Identities = 42/147 (28%), Positives = 52/147 (35%), Gaps = 18/147 (12%)
Query: 251 GARAQPG-----GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARA 305
G R +PG GP G G DP P + GL G G PG P G
Sbjct: 1183 GQRGEPGLEGDSGPMGPDGLKGDRGDPGPDGEHGEKGQEGLMGE-DGPPGPPGVTG---- 1237
Query: 306 PRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREA-P 364
R P + G + R GA G + P P P G+R +
Sbjct: 1238 ------VRGPEGKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLG 1291
Query: 365 PTSAPHPRRPAGSPPALADREGRRSLV 391
PT AP R A P LA +G + +V
Sbjct: 1292 PTGAPG-RMGAQGEPGLAGYDGHKGIV 1317
Score = 40.0 bits (92), Expect = 0.004
Identities = 51/191 (26%), Positives = 71/191 (37%), Gaps = 27/191 (14%)
Query: 251 GARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS--------GAPGEPAEPGR 302
G + + G A+GPPG D P+ R R G G G PG+ +PG
Sbjct: 1327 GEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGH 1386
Query: 303 A-----RAPRSAPSSREPRQTKRRVGSRARAGAGAVTG-PCPAAAQGARG--SWPSPRCL 354
P+ + + P+ + + G+ R G + G P P G +G P L
Sbjct: 1387 PGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGL 1446
Query: 355 PS-DGGA---REAPPTSAPHPRRPAG--SPPALADREGRRSLVPQTSIQGQNFAQLSLAR 408
P DG A E P P PAG P +A G + +G++ L
Sbjct: 1447 PGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQG---PPGFKGESGLPGQLGP 1503
Query: 409 PWAGKRGHRQR 419
P GKRG R
Sbjct: 1504 P--GKRGTEGR 1512
Score = 38.9 bits (89), Expect = 0.010
Identities = 54/212 (25%), Positives = 70/212 (33%), Gaps = 30/212 (14%)
Query: 143 GSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFPAARCRRRGAIR 202
GS +PGG PG P+ PG+R + A G R + PA RG
Sbjct: 1027 GSMGHPGMPGGMGTPGEPGPQGPPGSR--GPPGMRGAKGRRGPRGPDGPAGEQGSRGLKG 1084
Query: 203 KPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGSGARAQPGGPCWA 262
P + P Q+ +G G P GP
Sbjct: 1085 PP--------------------GPQGRPGRPGQQGVAGERGHLGSRGFPGIPGPSGPPGT 1124
Query: 263 QGPPGRLPDPIPLPTRAPRTSAGLAGVGS--GAPGEPAEPGRARAPRSAPSSREPRQTKR 320
+G PG +P P + P G G GA GEP PG A P + +
Sbjct: 1125 KGLPG---EPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGE-QG 1180
Query: 321 RVGSRARAGAGAVTGPC-PAAAQGARGSWPSP 351
+G R G +GP P +G RG P P
Sbjct: 1181 LIGQRGEPGLEGDSGPMGPDGLKGDRGD-PGP 1211
Score = 34.3 bits (77), Expect = 0.24
Identities = 58/248 (23%), Positives = 88/248 (35%), Gaps = 23/248 (9%)
Query: 138 ERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFPAARCRR 197
++ P S +ALP + P RP A +R G R P P+ R
Sbjct: 389 QKTAPSSFTKSALPTQKQVPPTSRPVPARVSRPAEKPIQRNPGMPR----PPPPSTR--- 441
Query: 198 RGAIRKPLHDVTAAA---FIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGSGARA 254
PL T+++ L ITS ++ R +H A S + A
Sbjct: 442 ------PLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPFTAL---SSSPA 492
Query: 255 QPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSRE 314
G + PP + P T PRT+ + GS G G + ++ P S
Sbjct: 493 PTPGSTRSTRPPATMVPPTS-GTSTPRTAPAVPTPGSAPTGSKKPIGSEASKKAGPKSSP 551
Query: 315 PRQTKRRVGSRAR--AGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHP- 371
+ R G AR + T P P Q ++ + P+ P+ + PTS+ +
Sbjct: 552 RKPVPLRPGKAARDVPLSDLTTRPSPRQPQPSQQTTPALVLAPAQFLSSSPRPTSSGYSI 611
Query: 372 RRPAGSPP 379
AGS P
Sbjct: 612 FHLAGSTP 619
Score = 33.5 bits (75), Expect = 0.40
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 233 PRQESHNFAKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS- 291
P ++ H G A G + P G A+G PGR P P+ P+ S G G+
Sbjct: 705 PGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGL 764
Query: 292 -GAPGEPAEPGRARAP 306
G PG E G P
Sbjct: 765 FGLPGSDGERGLPGVP 780
Score = 31.6 bits (70), Expect = 1.5
Identities = 49/192 (25%), Positives = 58/192 (30%), Gaps = 40/192 (20%)
Query: 258 GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRSA-------- 309
GP +G PG P P P G G GAPG +PGR P
Sbjct: 922 GPEGMKGKPGARGLPGPRGQLGPEGDEGPMGP-PGAPGLEGQPGRKGFPGRPGLDGVKGE 980
Query: 310 ---PSSREPRQTKRRVGSRARAGAGAVTGPC-------PAAAQGARGSWPSPRCLPSDGG 359
P P + +G G + G P G +GS P G
Sbjct: 981 PGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGT 1040
Query: 360 AREAPPTSAPHPRRPAG-----------SPPALADREGRRSLVPQTSIQGQNFAQLSLAR 408
E P P R P G P A +G R L QG+ R
Sbjct: 1041 PGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRP------GR 1094
Query: 409 PW----AGKRGH 416
P AG+RGH
Sbjct: 1095 PGQQGVAGERGH 1106
Score = 30.8 bits (68), Expect = 2.6
Identities = 43/153 (28%), Positives = 54/153 (35%), Gaps = 33/153 (21%)
Query: 251 GARAQPG-----GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARA 305
GAR PG GP +GP G P + G G+ G GEP +PGR
Sbjct: 931 GARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGL-DGVKGEPGDPGRPGP 989
Query: 306 PRSAPSSREPRQTKRRVGSRARAG-AGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAP 364
VG + G G V P +G RG P +P G+ P
Sbjct: 990 ----------------VGEQGFMGFIGLVGEPGIVGEKGDRGMM-GPPGVPGPKGSMGHP 1032
Query: 365 -------PTSAPHPRRPAGS--PPALADREGRR 388
P P+ P GS PP + +GRR
Sbjct: 1033 GMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRR 1065
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 50.1 bits (118), Expect = 4e-06
Identities = 63/245 (25%), Positives = 80/245 (32%), Gaps = 42/245 (17%)
Query: 138 ERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGA-AASVAAAGGTRLAQQAPFPAARCR 196
+R +PG A L G PGP P +PG R A AA G Q P PA
Sbjct: 1061 DRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAG--- 1117
Query: 197 RRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGSGARAQP 256
+GA GE+ P G G A P
Sbjct: 1118 EKGA------------------------PGEKGPQGPAGRD-----GLQGPVGLPGPAGP 1148
Query: 257 GGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSREPR 316
GP G G + +P ++ + G G +G G +PG P A PR
Sbjct: 1149 VGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPG-PTGPQGPIGQPG----PSGADGEPGPR 1203
Query: 317 QTKRRVGSRARAGAGAVTG-PCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPA 375
+ G + G G P P QG G P G + P P PR P+
Sbjct: 1204 GQQGLFGQKGDEGPRGFPGPPGPVGLQGLPG---PPGEKGETGDVGQMGPPGPPGPRGPS 1260
Query: 376 GSPPA 380
G+P A
Sbjct: 1261 GAPGA 1265
Score = 49.3 bits (116), Expect = 7e-06
Identities = 86/328 (26%), Positives = 103/328 (31%), Gaps = 94/328 (28%)
Query: 126 RRGILRPLAEREERRVPGSTRAAALPGGRDK-------PGPRRPRAAPGARSGAAASVAA 178
R G P E+ PG + P GRD PGP P PG G +
Sbjct: 1106 RPGPQGPPGPAGEKGAPGE-KGPQGPAGRDGLQGPVGLPGPAGPVGPPG-EDGDKGEIGE 1163
Query: 179 AG-----GTRLAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAP 233
G G + Q P P +G I +P SG P
Sbjct: 1164 PGQKGSKGDKGEQGPPGPTGP---QGPIGQPG------------------PSGADGEPGP 1202
Query: 234 RQESHNFAKGCAEFYGSGARAQPG--GPCWAQGPPG------------RLPDPIPLPTRA 279
R + F + E G R PG GP QG PG ++ P P R
Sbjct: 1203 RGQQGLFGQKGDE----GPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRG 1258
Query: 280 PRTSAGL-------AGVGS-GAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAG 331
P + G G+G+ GA GE EPG A P P P K G + +G
Sbjct: 1259 PSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEP-GLPGEGGPPGPKGERGEKGESGPS 1317
Query: 332 AVTGP----CPAAAQGARGSWPSPRCLPSDGGAREAP----------------------- 364
GP P G +GS P P P D G P
Sbjct: 1318 GAAGPPGPKGPPGDDGPKGS-PGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGS 1376
Query: 365 --PTSAPHPRRPAG--SPPALADREGRR 388
PT P P P G PP A EGR+
Sbjct: 1377 PGPTGEPGPSGPPGKRGPPGPAGPEGRQ 1404
Score = 42.7 bits (99), Expect = 7e-04
Identities = 70/279 (25%), Positives = 88/279 (31%), Gaps = 75/279 (26%)
Query: 142 PGSTRAAALPGGRDKPGPRRPRAAPGARSGAAAS-VAAAGGTRLAQ-QAPFPAARCRR-- 197
PG GG+ PGP+ P PG R A + GT+ + + FP +
Sbjct: 765 PGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGI 824
Query: 198 ---RGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGSGARA 254
RG I P G R P G R
Sbjct: 825 KGDRGEIGPP---------------------GPRGEDGPE--------------GPKGRG 849
Query: 255 QPGGPCWAQGPPGR-----LPDPIPLPTR-APRTSAGLAGV--------GSGAPGEPAEP 300
P G GPPG +P P R P+ S G G G G PG+P
Sbjct: 850 GPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPR 909
Query: 301 GRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGA 360
G+ R P R PR + G + +G G PA G RG P+
Sbjct: 910 GQ-RGPTGPRGERGPRGITGKPGPKGNSG-----GDGPAGPPGERG--------PNG--- 952
Query: 361 REAPPTSAPHPRRPAGSPPALADREGRRSLVPQTSIQGQ 399
PT P P+ P G PP G +T QG+
Sbjct: 953 -PQGPTGFPGPKGPPG-PPGKDGLPGHPGQRGETGFQGK 989
Score = 42.4 bits (98), Expect = 9e-04
Identities = 72/271 (26%), Positives = 93/271 (34%), Gaps = 38/271 (14%)
Query: 132 PLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFP 191
P ER E+ G + AA PG + PG P+ +PG G G A Q P
Sbjct: 1304 PKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGP-VGFPGDPGPPGEPGPAGQDGPP 1362
Query: 192 AARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPR----QESHNFAKGCAEF 247
+ G +P + E + G+R P ++ AKG A
Sbjct: 1363 GDK----GDDGEPGQTGSPGP---TGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGL 1415
Query: 248 YGSGARAQPGGPCWAQGPPG-----RLPDPI----------PLPTRAPRTSAGLAGV--G 290
G + P GP A G PG +P P+ P P GL G+
Sbjct: 1416 EGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGD 1475
Query: 291 SGAPGEPAEPGRAR--APRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSW 348
SG GE PG P + R GS G +TGP G G
Sbjct: 1476 SGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGP-----SGPIGP- 1529
Query: 349 PSPRCLPSDGGAREAPPTSAP-HPRRPAGSP 378
P P LP G + A +S P P+ AG P
Sbjct: 1530 PGPPGLPGPPGPKGAKGSSGPTGPKGEAGHP 1560
Score = 40.8 bits (94), Expect = 0.003
Identities = 41/145 (28%), Positives = 52/145 (35%), Gaps = 10/145 (6%)
Query: 258 GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAE----PGRARAPRSAPSSR 313
GP GP G++ DP R P GL G G PG P P R A S+
Sbjct: 481 GPPGTMGPTGQVGDP---GERGPPGRPGLPGA-DGLPGPPGTMLMLPFRFGGGGDA-GSK 535
Query: 314 EPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRR 373
P + + ++A + PA G G P P P GG + P P R
Sbjct: 536 GPMVSAQESQAQAILQQARLALRGPAGPMGLTGR-PGPVGPPGSGGLKGEPGDVGPQGPR 594
Query: 374 PAGSPPALADREGRRSLVPQTSIQG 398
PP A + GRR +G
Sbjct: 595 GVQGPPGPAGKPGRRGRAGSDGARG 619
Score = 40.0 bits (92), Expect = 0.004
Identities = 73/290 (25%), Positives = 90/290 (31%), Gaps = 67/290 (23%)
Query: 138 ERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFPAARCRR 197
ER PG LPG PGP R G + G AQ++ A +
Sbjct: 497 ERGPPGRP---GLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQA 553
Query: 198 RGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGSGARAQPG 257
R A+R P + +T P G G P
Sbjct: 554 RLALRGPAGPM-------------GLTGRPGPVGPP---------GSGGLKGEPGDVGPQ 591
Query: 258 GPCWAQGPPGRLPDP-------------IPLPT--RAPRTSAGLAGV-----------GS 291
GP QGPPG P +P T + R GLAG+ S
Sbjct: 592 GPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPS 651
Query: 292 GAPGEPAEPGRAR-----APRSAPSSREPRQTKRRVGSRARAGAGAVTG----PCPAAAQ 342
G PG P + G PR P PR G G VTG P P
Sbjct: 652 GPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNV 711
Query: 343 GARGSWPSPRCLPSDGGAREAP-PTSA---PHPRRPAGSP--PALADREG 386
G +G P P + GA+ P P A P + P G P P + +G
Sbjct: 712 GPQGE-PGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADG 760
Score = 38.1 bits (87), Expect = 0.016
Identities = 43/158 (27%), Positives = 50/158 (31%), Gaps = 29/158 (18%)
Query: 256 PGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS--GAPGEPAEPGRARAP--RSAPS 311
P GP GP G P P + GLAG G PG PG+ P R P
Sbjct: 1001 PQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPG 1060
Query: 312 SREPRQTKRRVGSRARAGAGAVTGPC-------PAAAQGARG--SWPSPRCLPSDGGARE 362
R +G + G GP PA A G G P P+ P G +
Sbjct: 1061 DRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKG 1120
Query: 363 AP----------------PTSAPHPRRPAGSPPALADR 384
AP P P P P G P D+
Sbjct: 1121 APGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDK 1158
Score = 34.3 bits (77), Expect = 0.24
Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 256 PGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS----GAPGEPAEPGRARAPRSAPS 311
P GP GPPG LP P P P A +S G G PG P PG P +
Sbjct: 1523 PSGPIGPPGPPG-LPGP-PGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEVIQPLPIQA 1580
Query: 312 SREPR 316
SR R
Sbjct: 1581 SRTRR 1585
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 48.9 bits (115), Expect = 9e-06
Identities = 83/298 (27%), Positives = 105/298 (35%), Gaps = 43/298 (14%)
Query: 128 GILRP----LAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTR 183
G+ RP +A +E+ GS + +PG GPR P+ G + GA + G
Sbjct: 186 GLSRPFSAQMAGLDEKSGLGS-QVGLMPGSVGPVGPRGPQGLQGQQGGAGPT-----GPP 239
Query: 184 LAQQAPFPAARCRRRGAIR---KPLHDVTAAAFIVLVELLFAITSGER----AASAPRQE 236
P P RG KP D E+ FA + G R A P +
Sbjct: 240 GEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLK 299
Query: 237 SHNFAKGC------AEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVG 290
H KG GS A P GP A GP G P P+ + G G
Sbjct: 300 GHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGA- 358
Query: 291 SGAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQ-------G 343
G PG+P G P S+ P G + AG GP Q G
Sbjct: 359 HGMPGKPGPMGPLGIPGSSGFPGNP-------GMKGEAGPTGARGPEGPQGQRGETGPPG 411
Query: 344 ARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGS--PPALADREGRRSLVPQTSIQGQ 399
GS P + +DG PT +P P GS PP +G S PQ I+GQ
Sbjct: 412 PVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQG--STGPQ-GIRGQ 466
Score = 46.2 bits (108), Expect = 6e-05
Identities = 47/156 (30%), Positives = 55/156 (35%), Gaps = 28/156 (17%)
Query: 243 GCAEFYGSGARAQPGGPCWAQGPPGRLPDP---IPLPTRAPRTSAGLAG----------- 288
G F GS R P GP A GP G L +P P R S G G
Sbjct: 906 GATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGP 965
Query: 289 VGSGAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPC-------PAAA 341
G PGE +PG P A ++ + R G R G + GP P A
Sbjct: 966 GDKGDPGEDGQPGPDGPPGPAGTTGQ-RGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGA 1024
Query: 342 QGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGS 377
G +G P P P G P P P PAG+
Sbjct: 1025 TGDKGP-PGPVGPPGSNG-----PVGEPGPEGPAGN 1054
Score = 44.7 bits (104), Expect = 2e-04
Identities = 78/303 (25%), Positives = 95/303 (31%), Gaps = 50/303 (16%)
Query: 127 RGILRPLAEREERRVPGSTRAAALPG--GRD-KPGPRRPRAAPGARSGAAASVAAAGGTR 183
RG P +R E PG + LPG G D PG + P +PG SG S G
Sbjct: 395 RGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGT-SGPPGSAGPPG--- 450
Query: 184 LAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKG 243
+P P +G +P F +G + P
Sbjct: 451 ----SPGPQGSTGPQGIRGQPGDPGVPG---------FKGEAGPKGEPGPHGIQGPIGPP 497
Query: 244 CAEFYGSGARAQPG-----GPCWAQGPPGRL----PDPIPLPT-----RAPRTSAGLAGV 289
E G R PG GP +G PG D +P P R P S+G G
Sbjct: 498 -GEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKG- 555
Query: 290 GSGAPGEPAEPG--RARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGS 347
G PG P EPG AR P + P +G+ G G Q
Sbjct: 556 SQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMG 615
Query: 348 WPSPRCLPSD-GGAREAPPTSAPHPRRPAG-----------SPPALADREGRRSLVPQTS 395
P P+ D G EA P R G PP LA G + T
Sbjct: 616 LPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTG 675
Query: 396 IQG 398
QG
Sbjct: 676 FQG 678
Score = 43.1 bits (100), Expect = 5e-04
Identities = 51/179 (28%), Positives = 65/179 (36%), Gaps = 12/179 (6%)
Query: 250 SGARAQPG--GPCWAQGPPG-RLPDPIPLPTRAPRTSAGLAGV-----GSGAPGEPAEPG 301
+G R +PG GP +QGP G R P P P R P+ G GV G PG P+ PG
Sbjct: 125 TGIRGRPGPAGPPGSQGPRGERGPKGRPGP-RGPQGIDGEPGVPGQPGAPGPPGHPSHPG 183
Query: 302 RARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAR 361
R + K +GS+ G+V P QG +G G
Sbjct: 184 PDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPG 243
Query: 362 EAPPTSAPHPRRPAGSP--PALADREGRRSLVPQTSIQGQNFAQLSLARP-WAGKRGHR 417
+ P R P G P P GR + G A+ P G +GHR
Sbjct: 244 DPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHR 302
Score = 42.7 bits (99), Expect = 7e-04
Identities = 44/129 (34%), Positives = 47/129 (36%), Gaps = 8/129 (6%)
Query: 258 GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGV--GSGAPGEPAEPGRARAP--RSAPSSR 313
GP A G GR P + R S GL G SG PG+P E G A P R AP
Sbjct: 588 GPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKD 647
Query: 314 EPRQTKRRVGSRARAGAGAVTG-PCPAAAQGARG--SWPSPRCLPSDGGAREAPPTSAP- 369
VG AG G P P QG G P P D G P P
Sbjct: 648 GEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPL 707
Query: 370 HPRRPAGSP 378
PR G+P
Sbjct: 708 GPRGERGNP 716
Score = 39.7 bits (91), Expect = 0.006
Identities = 51/182 (28%), Positives = 57/182 (31%), Gaps = 56/182 (30%)
Query: 251 GARAQPG--GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAG----------VG-------- 290
GAR PG GP GP G +P P P S G G VG
Sbjct: 795 GARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPD 854
Query: 291 -----SGAPGEPAEPGRARAP-----RSAPSSREPRQTKRRVGSRARAG----------A 330
G PGEP + G A +P +P P G R G A
Sbjct: 855 GQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSA 914
Query: 331 GAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHP--------RRPAGSPPALA 382
G V P PA A G G P +E PP P R PAG P
Sbjct: 915 GRVGPPGPAGAPGPAGPLGEP--------GKEGPPGLRGDPGSHGRVGDRGPAGPPGGPG 966
Query: 383 DR 384
D+
Sbjct: 967 DK 968
Score = 36.2 bits (82), Expect = 0.062
Identities = 67/269 (24%), Positives = 82/269 (30%), Gaps = 39/269 (14%)
Query: 142 PGSTRAAALPGGRDKPGPRRPRAAPGARS--GAAASVAAAG--GTRLAQQAPFPAARCRR 197
PGS PG PGP P PG G + G G R P
Sbjct: 911 PGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGD 970
Query: 198 RGAIRKPLHDVTAAAFIVLVELLFAITSGERA-ASAPRQESHNFAKGCAEFYGSGARAQP 256
G +P D A T+G+R P Q G G+ + P
Sbjct: 971 PGEDGQPGPDGPPGP---------AGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGP 1021
Query: 257 GGPCWAQGPPGRLPDPI---PLPTRAPRTSAGLAGVGS--GAPGEPAEPGRARAPRSAPS 311
G +GPPG + P P+ P AG G GA GE + G P P
Sbjct: 1022 TGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDP-GPAGLPG 1080
Query: 312 SREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHP 371
S+ GA P P A G G P G A P P
Sbjct: 1081 SQ-----------------GAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGP 1123
Query: 372 RRPAGSPPALADR--EGRRSLVPQTSIQG 398
+ P G DR G++ T +QG
Sbjct: 1124 QGPRGDKGDHGDRGDRGQKGHRGFTGLQG 1152
Score = 36.2 bits (82), Expect = 0.062
Identities = 55/187 (29%), Positives = 65/187 (34%), Gaps = 37/187 (19%)
Query: 133 LAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPG--ARSGAAASVAAAGGTRLAQQAPF 190
+ ER +R PG A LPG + PG P APG + G S G A +
Sbjct: 1064 VGERGDRGDPGP---AGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGL 1120
Query: 191 PAARCRR--------RGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAK 242
P + R RG + H F L L P N +
Sbjct: 1121 PGPQGPRGDKGDHGDRGDRGQKGH----RGFTGLQGL-------------PGPPGPNGEQ 1163
Query: 243 GCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAP---RTSAGLAGVGSGAPGEPAE 299
G A G P GP GP G+ +P PL P R S G AG G PGEP
Sbjct: 1164 GSAGIPGPFGPRGPPGPV---GPSGKEGNPGPLGPIGPPGVRGSVGEAG-PEGPPGEPGP 1219
Query: 300 PGRARAP 306
PG P
Sbjct: 1220 PGPPGPP 1226
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 48.9 bits (115), Expect = 9e-06
Identities = 53/195 (27%), Positives = 72/195 (36%), Gaps = 35/195 (17%)
Query: 218 ELLFAITSGERAASAPRQESHNFAKGCAEF----------YGSGARAQPGGPCWAQGPP- 266
+L+ + + A + PRQ + + G G QP GP Q PP
Sbjct: 404 QLIVELVVNKMAQALPRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPP 463
Query: 267 -GRLPDPIPLPTRA---------PRTSAGLAGVGSGAPGEPAEPGRARAPRSAPS----- 311
G P P P P R P+ L+G+G A G P P R +P SAP
Sbjct: 464 QGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPA-GSPL-PQRLPSPTSAPQQPASQ 521
Query: 312 SREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHP 371
+ P Q + R G GA P A+ PSP+ A S P P
Sbjct: 522 AAPPTQGQGRQSRPVAGGPGAPPAARPPAS-------PSPQRQAGPPQATRQTSVSGPAP 574
Query: 372 RRPAGSPPALADREG 386
+ +G+PP R+G
Sbjct: 575 PKASGAPPGGQQRQG 589
Score = 38.5 bits (88), Expect = 0.013
Identities = 43/160 (26%), Positives = 55/160 (34%), Gaps = 27/160 (16%)
Query: 231 SAPRQESHNFAKGCAEFYGSGARAQP--GGPCWAQGPPGRLPDPIPLP---------TRA 279
SAP+Q + ++ G G +++P GGP PP P P P TR
Sbjct: 513 SAPQQPA---SQAAPPTQGQGRQSRPVAGGP---GAPPAARPPASPSPQRQAGPPQATRQ 566
Query: 280 PRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPA 339
S SGAP P R P+ P P + + G R G P
Sbjct: 567 TSVSGPAPPKASGAP--PGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTG--------PP 616
Query: 340 AAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSPP 379
Q R S P P P A++ P AG PP
Sbjct: 617 TTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPP 656
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 48.9 bits (115), Expect = 9e-06
Identities = 53/195 (27%), Positives = 72/195 (36%), Gaps = 35/195 (17%)
Query: 218 ELLFAITSGERAASAPRQESHNFAKGCAEF----------YGSGARAQPGGPCWAQGPP- 266
+L+ + + A + PRQ + + G G QP GP Q PP
Sbjct: 404 QLIVELVVNKMAQALPRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPP 463
Query: 267 -GRLPDPIPLPTRA---------PRTSAGLAGVGSGAPGEPAEPGRARAPRSAPS----- 311
G P P P P R P+ L+G+G A G P P R +P SAP
Sbjct: 464 QGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPA-GSPL-PQRLPSPTSAPQQPASQ 521
Query: 312 SREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHP 371
+ P Q + R G GA P A+ PSP+ A S P P
Sbjct: 522 AAPPTQGQGRQSRPVAGGPGAPPAARPPAS-------PSPQRQAGPPQATRQTSVSGPAP 574
Query: 372 RRPAGSPPALADREG 386
+ +G+PP R+G
Sbjct: 575 PKASGAPPGGQQRQG 589
Score = 38.5 bits (88), Expect = 0.013
Identities = 43/160 (26%), Positives = 55/160 (34%), Gaps = 27/160 (16%)
Query: 231 SAPRQESHNFAKGCAEFYGSGARAQP--GGPCWAQGPPGRLPDPIPLP---------TRA 279
SAP+Q + ++ G G +++P GGP PP P P P TR
Sbjct: 513 SAPQQPA---SQAAPPTQGQGRQSRPVAGGP---GAPPAARPPASPSPQRQAGPPQATRQ 566
Query: 280 PRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPA 339
S SGAP P R P+ P P + + G R G P
Sbjct: 567 TSVSGPAPPKASGAP--PGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTG--------PP 616
Query: 340 AAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSPP 379
Q R S P P P A++ P AG PP
Sbjct: 617 TTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPP 656
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 48.9 bits (115), Expect = 9e-06
Identities = 73/312 (23%), Positives = 101/312 (32%), Gaps = 61/312 (19%)
Query: 132 PLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAP--------GARSGAAASVAAAGGTR 183
P ER ERR P + GG P RRP A+P R A A
Sbjct: 384 PAGERGERRKPNA-------GGSPAPVRRRPEASPVQKKEKKDKERENEKEKSALARERS 436
Query: 184 LAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKG 243
L ++ PA+ R L A T+ E + + + S
Sbjct: 437 LKKRQSLPASPRAR----------------------LSASTASELSPKSKARPSSP---- 470
Query: 244 CAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRA 303
S + +P PC + GP LP P P G + G A
Sbjct: 471 ------STSWHRPASPCPSPGPGHTLPPKPPSPR----------GTTASPKGRVRRKEEA 514
Query: 304 RAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAA--QGARGSWPSPRCLPSDGGAR 361
+ SA + Q+KRR + + A A P PA + P P+D
Sbjct: 515 KESPSAAGPEDKSQSKRRASNEKESAAPASPAPSPAPSPTPAPPQKEQPPAETPTDAAVL 574
Query: 362 EAPPTSAPHPRRPAGSPPALADREGRRSLVPQTSIQGQNFAQL-SLARPWAGKRGHRQRE 420
+PP AP P P+ DRE L+ + Q + + R +R R RE
Sbjct: 575 TSPPAPAP-PVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERRLQAERDKRMRE 633
Query: 421 PEALRALRAGQE 432
+ R A E
Sbjct: 634 EQLAREAEARAE 645
Score = 35.4 bits (80), Expect = 0.11
Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 252 ARAQPGGPCWAQGPPGRLPDPIP--LPTRAPRTSAGLAGVGSGA--PGEPAEPGRARAPR 307
AR P +G P P P+ +P P T + S P EP P PR
Sbjct: 19 ARTPPEPRPSPEGDPSPPPPPMSALVPDTPPDTPPAMKNATSSKQLPLEPESPSGQVGPR 78
Query: 308 SAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPT 366
AP E ++ +++R GP A R S PSP +P A ++PPT
Sbjct: 79 PAPPQEESPSSE----AKSRGPTPPAMGPRDARPP-RRSSQPSPTAVP----ASDSPPT 128
Score = 32.0 bits (71), Expect = 1.2
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 323 GSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSPPALA 382
G RA GAGA P A+ P PR P + PP SA P P +PPA+
Sbjct: 4 GPRAELGAGA---PPAVVARTP----PEPRPSPEGDPSPPPPPMSALVPDTPPDTPPAMK 56
Query: 383 DREGRRSL 390
+ + L
Sbjct: 57 NATSSKQL 64
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 48.1 bits (113), Expect = 2e-05
Identities = 58/192 (30%), Positives = 65/192 (33%), Gaps = 59/192 (30%)
Query: 249 GSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEP-------- 300
G RA+P P P P +R AG G GSG+ E A P
Sbjct: 742 GQTDRARPWSP------------PAPGESRDRARGAGQPGPGSGSGAERAGPERRARDTQ 789
Query: 301 --------------GRARAPRSAPSSREPRQTK---------RRVGSRARAG-------- 329
GRAR RE + + RR SRAR G
Sbjct: 790 TRTRRDKLTDSARGGRARLTAGRRVRRESGRRRAGATSQGAIRRAASRARKGESRRPLPA 849
Query: 330 --AGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAP---PTSAPHPRRPAGSP---PAL 381
AG P PAAA+ ARGSW PS R P AP PRR G P
Sbjct: 850 NSAGRPALPSPAAARSARGSWGLRASRPSRAAPRGPPNFQRCPAPRPRRRLGVSIVGPGR 909
Query: 382 ADREGRRSLVPQ 393
A GR S P+
Sbjct: 910 AHSAGRSSYSPK 921
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 47.8 bits (112), Expect = 2e-05
Identities = 72/290 (24%), Positives = 95/290 (32%), Gaps = 59/290 (20%)
Query: 126 RRGILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLA 185
+RG P+ R E PGS G +PGP P PG+ +S G+
Sbjct: 622 QRGREGPMGPRGEAGPPGSGEKGER-GAAGEPGPHGPPGVPGSVGPKGSS-----GSPGP 675
Query: 186 QQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCA 245
Q P P RG + P + + P + KG
Sbjct: 676 QGPPGPVGLQGLRGEVGLP-----------------GVKGDKGPMGPPGPKGDQGEKGPR 718
Query: 246 EFYGS-GARAQPG-----GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS--GAPGEP 297
G G R PG G A GP G P + PR GL G+ G PG
Sbjct: 719 GLTGEPGMRGLPGAVGEPGAKGAMGPAG------PDGHQGPRGEQGLTGMPGIRGPPGPS 772
Query: 298 AEPGR-----ARAPRSAPSSREPRQTKRRVGSRAR----AGAGAVTGPCPAAAQGARGSW 348
+PG+ + P+ P + K G+ + G+ +T P P GA G
Sbjct: 773 GDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGP- 831
Query: 349 PSPRCLPSDGGAREAP----------PTSAPHPRRPAGSPPALADREGRR 388
P P P G P P P PR P G P++ G R
Sbjct: 832 PGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPG--PSIPGPPGPR 879
Score = 37.4 bits (85), Expect = 0.028
Identities = 47/165 (28%), Positives = 54/165 (32%), Gaps = 29/165 (17%)
Query: 249 GSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS--GAPGEPAEPGRARAP 306
GS PG P GPPG + P P P AGL G G P PG P
Sbjct: 813 GSSMLTVPGPP----GPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPG----P 864
Query: 307 RSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPT 366
R P P G R G G P P P S+ + P
Sbjct: 865 RGPPGPSIPGPP----GPRGPPGEGLPGPPGP------------PGSFLSNSETFLSGPP 908
Query: 367 SAPHPRRPAG--SPPALADREGRRSLVPQTSIQGQNFAQLSLARP 409
P P P G PP +G + L P S G + L+L P
Sbjct: 909 GPPGPPGPKGDQGPPGPRGHQGEQGL-PGFSTSGSSSFGLNLQGP 952
Score = 37.0 bits (84), Expect = 0.036
Identities = 42/161 (26%), Positives = 54/161 (33%), Gaps = 44/161 (27%)
Query: 256 PGGPCWAQGPPG-RLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGR--------ARAP 306
P GP +GPPG +P P P P P G G PG P PG P
Sbjct: 858 PPGPPGPRGPPGPSIPGP-PGPRGPP---------GEGLPGPPGPPGSFLSNSETFLSGP 907
Query: 307 RSAPSSREPRQTKRRVGSRARAGAGAVTG-------------------PCPAAAQGARGS 347
P P+ + G R G + G P P +G +G
Sbjct: 908 PGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQGPKGDKGD 967
Query: 348 WPSPRCL-----PSDGGAREAPPTSA-PHPRRPAGSPPALA 382
P L PS+GG+ S P P P G P +++
Sbjct: 968 PGVPGALGIPSGPSEGGSSSTMYVSGPPGPPGPPGPPGSIS 1008
Score = 35.4 bits (80), Expect = 0.11
Identities = 42/157 (26%), Positives = 52/157 (33%), Gaps = 20/157 (12%)
Query: 249 GSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRS 308
G R P GP GPPG + R +AG G G PG P G +
Sbjct: 621 GQRGREGPMGPRGEAGPPGS-------GEKGERGAAGEPG-PHGPPGVPGSVG-PKGSSG 671
Query: 309 APSSREPRQTKRRVGSRARAGAGAVTG-------PCPAAAQGARGSWPSPRCLPSDGGAR 361
+P + P G R G V G P P QG +G PR L + G R
Sbjct: 672 SPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPGPKGDQGEKG----PRGLTGEPGMR 727
Query: 362 EAPPTSAPHPRRPAGSPPALADREGRRSLVPQTSIQG 398
P + A P +G R T + G
Sbjct: 728 GLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPG 764
Score = 33.9 bits (76), Expect = 0.31
Identities = 47/194 (24%), Positives = 64/194 (32%), Gaps = 34/194 (17%)
Query: 142 PGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFPAARCRRRGAI 201
PG A LPG ++ + P PG R S+ G R P G
Sbjct: 838 PGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLP-------GPP 890
Query: 202 RKPLHDVTAAAFIVLVELLFAITSGERAASAPRQES-------HNFAKGCAEFYGSGARA 254
P +F+ E + G P+ + H +G F SG+ +
Sbjct: 891 GPP------GSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSS 944
Query: 255 ------QPGGPCWAQGPPGRLPDP-----IPLPTRAPRTSAGLAGVGSGAPGEPAEPGRA 303
P GP QGP G DP + +P+ + SG PG P PG
Sbjct: 945 FGLNLQGPPGPPGPQGPKGDKGDPGVPGALGIPSGPSEGGSSSTMYVSGPPGPPGPPG-- 1002
Query: 304 RAPRSAPSSREPRQ 317
P S SS + Q
Sbjct: 1003 -PPGSISSSGQEIQ 1015
Score = 29.3 bits (64), Expect = 7.6
Identities = 39/138 (28%), Positives = 44/138 (31%), Gaps = 20/138 (14%)
Query: 258 GPCWAQGPPGRLPDPIPLPTRAPRTSAGL------AGVGSGAPGEPAEPGRARAPRSAPS 311
GP GPPG D L S+ + +G+ G PG P PG P
Sbjct: 1106 GPRGPPGPPGASGDGSLLSLDYAELSSRILSYMSSSGISIGLPGPPGPPG-------LPG 1158
Query: 312 SREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPS---DGGAREAP---- 364
+ GS R G P P G S S L S G P
Sbjct: 1159 TSYEELLSLLRGSEFRGIVGPPGPPGPPGIPGNVWSSISVEDLSSYLHTAGLSFIPGPPG 1218
Query: 365 PTSAPHPRRPAGSPPALA 382
P P PR P G ALA
Sbjct: 1219 PPGPPGPRGPPGVSGALA 1236
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 47.8 bits (112), Expect = 2e-05
Identities = 52/194 (26%), Positives = 68/194 (35%), Gaps = 24/194 (12%)
Query: 214 IVLVELLFAITSGERAASAPRQESH-----NFAKGCAEFYGSGARAQPGGPCWAQGPP-- 266
I+L L A++S + QE +G G+ + P P QGPP
Sbjct: 4 ILLSVALLALSSAQNLNEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQ 63
Query: 267 -GRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARA-PRSAPSSREPRQTKRRVGS 324
G P P P P+ G G P P PG+ + P SR PR +
Sbjct: 64 GGNQPQGPPPPPGKPQ---GPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQG 120
Query: 325 RARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSPPALADR 384
G GP P + P+ P GG + P P P +P G PP D
Sbjct: 121 PPPQGGNQPQGPPPPPGK--------PQGPPPQGGNK---PQGPPPPGKPQGPPPQ-GDN 168
Query: 385 EGRRSLVPQTSIQG 398
+ R S P QG
Sbjct: 169 KSRSSRSPPGKPQG 182
Score = 45.4 bits (106), Expect = 1e-04
Identities = 47/153 (30%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 252 ARAQPGGPCWAQGPP---GRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRS 308
+R+ PG P QGPP G P P P P+ G G P P PG+ + P
Sbjct: 173 SRSPPGKP---QGPPPQGGNQPQGPPPPPGKPQ---GPPPQGGNKPQGPPPPGKPQGP-- 224
Query: 309 APSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWP---SPRCLPSDGGAREAPP 365
P Q + S AR+ G GP P +G P P+ P GG + P
Sbjct: 225 ------PPQGDNKSQS-ARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK---P 274
Query: 366 TSAPHPRRPAGSPPALADREGRRSLVPQTSIQG 398
P P +P G PP + R S P QG
Sbjct: 275 QGPPPPGKPQGPPPQ-GGSKSRSSRSPPGKPQG 306
Score = 42.0 bits (97), Expect = 0.001
Identities = 34/124 (27%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 262 AQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSREPRQTKRR 321
A+ PPG+ P P P+ G G P P P+ P +P+ +
Sbjct: 235 ARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP-----PQGGNKPQGPPPPGKPQGPPPQ 289
Query: 322 VGSRARAG---AGAVTGPCPAAAQGARGSWP---SPRCLPSDGGAREAPPTSAPHPRRPA 375
GS++R+ G GP P +G P P+ P GG + P P P +P
Sbjct: 290 GGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK---PQGPPPPGKPQ 346
Query: 376 GSPP 379
G PP
Sbjct: 347 GPPP 350
Score = 38.9 bits (89), Expect = 0.010
Identities = 39/139 (28%), Positives = 51/139 (36%), Gaps = 24/139 (17%)
Query: 249 GSGARAQPGGPCWAQGPP---GRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARA 305
GS +R+ P QGPP G P P P P+ G G P P PG+ +
Sbjct: 291 GSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQ---GPPPQGGNKPQGPPPPGKPQG 347
Query: 306 PRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAR--EA 363
P S+ AR+ G GP +G P P+ G + +A
Sbjct: 348 PPPQGGSK---------SRSARSPPGKPQGPPQQEGNNPQGPPP-----PAGGNPQQPQA 393
Query: 364 PPTSAPH--PRRPAGSPPA 380
PP P PR P G P+
Sbjct: 394 PPAGQPQGPPRPPQGGRPS 412
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 47.4 bits (111), Expect = 3e-05
Identities = 54/169 (31%), Positives = 69/169 (40%), Gaps = 21/169 (12%)
Query: 264 GPPGRLPDP-IPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSREPRQTKRR- 321
GP GR P +PL AG+ G PA G ARA A R Q++R
Sbjct: 93 GPGGRGPQAEVPLVLSERHVPAGIPGARGRLA--PARGGAARARLLAVEVRVAVQSERHR 150
Query: 322 -------VGSRARAGAGAVTGP---CPAAAQGARGSWPS-PRCLPSDGGAREAPPTSAPH 370
V + +A A TGP P A + A G+ S PR L R A P P
Sbjct: 151 HVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLL------RPASPPPRPA 204
Query: 371 PRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARPWAGKRGHRQR 419
PRR + +P R GR Q + G A+L L G+R HR++
Sbjct: 205 PRRRSTAPRHEGGRPGRGRTRRQPHLAGAGCARLELEGARMGERLHRRQ 253
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 47.4 bits (111), Expect = 3e-05
Identities = 74/323 (22%), Positives = 102/323 (31%), Gaps = 70/323 (21%)
Query: 128 GILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQ 187
GI+ PL + +PG +PG R +PG + + G +G S G ++ +
Sbjct: 1086 GIIGPLGRSGQTGLPGPEGIVGIPGQRGRPGKKGDKGQIGP-TGEVGSRGPPG--KIGKS 1142
Query: 188 APFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEF 247
P A RGA+ + + P H G +
Sbjct: 1143 GPKGAR--GTRGAVGH-----------------LGLMGPDGEPGIPGYRGHQGQPGPSGL 1183
Query: 248 YG-SGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS--GAPGEPAEPGRAR 304
G G + PG GPPG +P P+ + R G G G PG G+ +
Sbjct: 1184 PGPKGEKGYPGEDSTVLGPPGPRGEPGPVGDQGERGEPGAEGYKGHVGVPGLRGATGQ-Q 1242
Query: 305 APRSAPSSREPRQTKRRVGSRARAGAGAVTGPC-------------PAAAQGARGS---- 347
P P + + K GS G GP P QG G+
Sbjct: 1243 GPPGEPGDQGEQGLKGERGSEGNKGKKGAPGPSGKPGIPGLQGLLGPKGIQGYHGADGIS 1302
Query: 348 -------WPSPRCLPS-DGGAREAPPTSAPHPRRPAGS-----PPALADREGRRSLVPQT 394
P + LP GG AP P GS P + +G + L Q
Sbjct: 1303 GNPGKIGPPGKQGLPGIRGGPGRTGLAGAPGPPGVKGSSGLPGSPGIQGPKGEQGLPGQP 1362
Query: 395 SIQGQNFAQLSLARPWAGKRGHR 417
IQ GKRGHR
Sbjct: 1363 GIQ--------------GKRGHR 1371
Score = 36.6 bits (83), Expect = 0.048
Identities = 51/203 (25%), Positives = 64/203 (31%), Gaps = 55/203 (27%)
Query: 250 SGARAQPG--GPCWAQGPPGRLPDPIPLPTR-APRTSAGLAGVGSGAPGEPAEPGRAR-- 304
SG PG GP GP G P I +P + P GL G G PG P G
Sbjct: 752 SGQTGDPGLQGPSGPPGPEG-FPGDIGIPGQNGPEGPKGLLG-NRGPPGPPGLKGTQGEE 809
Query: 305 ---------APRSAPSSRE------PRQTKRRVGSRARAGAGAVTGPC------------ 337
PR P + P K VG + G TGP
Sbjct: 810 GPIGAFGELGPRGKPGQKGYAGEPGPEGLKGEVGDQGNIGKIGETGPVGLPGEVGMTGSI 869
Query: 338 ----------PAAAQGARG--SWPSPRC---------LPSDGGAREAPPTSAPHPRRPAG 376
P QG +G +P P LP GAR P + P +R +
Sbjct: 870 GEKGERGSPGPLGPQGEKGVMGYPGPPGVPGPIGPLGLPGHVGARGPPGSQGPKGQRGSR 929
Query: 377 SPPALADREGRRSLVPQTSIQGQ 399
P L +G + + QG+
Sbjct: 930 GPDGLLGEQGIQGAKGEKGDQGK 952
Score = 33.5 bits (75), Expect = 0.40
Identities = 32/106 (30%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 256 PGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSREP 315
P G GPPG P P R PR G G G PG P G P +P P
Sbjct: 490 PKGDTGPPGPPGPAGIPGPSGKRGPRGIPGPHG-NPGLPGLPGPKGPKGDPGFSPGQPVP 548
Query: 316 RQTKRRVGSRARAGAGAVTGPCPAAAQGARG--SWPSPRCLPSDGG 359
G + G + G P QG +G P LP + G
Sbjct: 549 -------GEKGDQGLSGLMG--PPGMQGDKGLKGHPGLPGLPGEQG 585
Score = 30.4 bits (67), Expect = 3.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 128 GILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSG 171
GI P +R R +PG LPG PGP+ P+ PG G
Sbjct: 504 GIPGPSGKRGPRGIPGPHGNPGLPG---LPGPKGPKGDPGFSPG 544
Score = 29.3 bits (64), Expect = 7.6
Identities = 16/44 (36%), Positives = 18/44 (40%)
Query: 126 RRGILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGAR 169
R GI+ P R G G R +PGP P APG R
Sbjct: 1436 REGIIGPTGRTGPRGEKGFRGETGPQGPRGQPGPPGPPGAPGPR 1479
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 47.0 bits (110), Expect = 4e-05
Identities = 78/280 (27%), Positives = 97/280 (34%), Gaps = 81/280 (28%)
Query: 122 TEHQRR-GILRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARS--GAAASVAA 178
T H R G P E+ + +PG PG + GP+ P PGA+ GA + A
Sbjct: 340 TPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPG---ELGPQGPTGPPGAKGQEGAHGAPGA 396
Query: 179 AG--GTRLAQQAPFPAARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQE 236
AG G AP P+ G++ P G R P ++
Sbjct: 397 AGNPGAPGHVGAPGPSGP---PGSVGAP---------------------GLRGT--PGKD 430
Query: 237 SHNFAKGCAEFYGS----GARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS- 291
KG A GS G R PG P GPPG+ D P +P L G
Sbjct: 431 GERGEKGAAGEEGSPGPVGPRGDPGAP-GLPGPPGKGKDGEPGLRGSPGLPGPLGTKGDR 489
Query: 292 GAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSP 351
GAPG P PG SR G G P P+ G +GS P
Sbjct: 490 GAPGIPGSPG----------------------SRGDPGIGVAGPPGPSGPPGDKGS-PGS 526
Query: 352 RCLPSDGGAREAPPTSAPHPRRPAGSPPALADREGRRSLV 391
R LP P P+ PAG R+G SL+
Sbjct: 527 RGLP-----------GFPGPQGPAG-------RDGLSSLL 548
Score = 45.8 bits (107), Expect = 8e-05
Identities = 56/194 (28%), Positives = 67/194 (34%), Gaps = 26/194 (13%)
Query: 224 TSGERAASAP-RQESHNFAKGCAEFYGS-GARAQPG--GPCWAQGPPGRLPDPIPLPTRA 279
+ GER A Q+ G F G G PG G A GPPG P
Sbjct: 616 SQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPG 675
Query: 280 PRTSAGLAGVGS--------GAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAG 331
P+ +GL G+ G PG P EPG+A P P R G +GA
Sbjct: 676 PQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEP-GLPGPEGARGPPGFKGHTGDSGA- 733
Query: 332 AVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSP-----PALADREG 386
P P GA G P LP G + PT P+ P G P P G
Sbjct: 734 ----PGPRGESGAMG-LPGQEGLPGKDG--DTGPTGPQGPQGPRGPPGKNGSPGSPGEPG 786
Query: 387 RRSLVPQTSIQGQN 400
Q +G+N
Sbjct: 787 PSGTPGQKGSKGEN 800
Score = 32.7 bits (73), Expect = 0.69
Identities = 34/128 (26%), Positives = 40/128 (31%), Gaps = 11/128 (8%)
Query: 256 PGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGS-----GAPGEPAEPGRARAPRSAP 310
P GP G PG +P P T + S G G G G P EPG P
Sbjct: 769 PRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEG 828
Query: 311 SSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPH 370
+P + + G R G GP G +G P G P P
Sbjct: 829 VPGKPGEPGFK-GERGDPGIKGDKGP-----PGGKGQPGDPGIPGHKGHTGLMGPQGLPG 882
Query: 371 PRRPAGSP 378
P G P
Sbjct: 883 ENGPVGPP 890
Score = 31.2 bits (69), Expect = 2.0
Identities = 25/79 (31%), Positives = 29/79 (36%), Gaps = 12/79 (15%)
Query: 292 GAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPC-PAAAQGARGSWPS 350
G PG P PG+ P A EP R G G + GP P +G RG+
Sbjct: 944 GRPGPPGPPGKDGLPGRAGPMGEP----------GRPGQGGLEGPSGPIGPKGERGAKGD 993
Query: 351 PRCLPSDGGAREAPPTSAP 369
P P G E P P
Sbjct: 994 PGA-PGVGLRGEMGPPGIP 1011
Score = 30.8 bits (68), Expect = 2.6
Identities = 63/266 (23%), Positives = 81/266 (30%), Gaps = 72/266 (27%)
Query: 151 PGGRDKPGPRRPRAAPG-----ARSGAAASVAAAGGTRLAQQAPFPAARCRRRGAIRKPL 205
PG PGP+ P PG + G G A + P GA P
Sbjct: 668 PGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPE----GARGPPG 723
Query: 206 HDVTAAAFIVLVELLFAITSGERAASAPRQESHNFA----KGCAEFYGSGARAQPGGPCW 261
F +G+ A PR ES +G G P GP
Sbjct: 724 ---------------FKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQG 768
Query: 262 AQGPPGRLPDP-------------------------IP--LPTRAPRTSAGLAGVGS--G 292
+GPPG+ P +P L R P G GV G
Sbjct: 769 PRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEG 828
Query: 293 APGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPR 352
PG+P EPG + R P + K G + + G + G +G G P+
Sbjct: 829 VPGKPGEPG-FKGERGDPGI---KGDKGPPGGKGQPGDPGIPG-----HKGHTGLM-GPQ 878
Query: 353 CLPSDGGAREAPPTSAPHPRRPAGSP 378
LP + G P P P G P
Sbjct: 879 GLPGENG-----PVGPPGPPGQPGFP 899
Score = 30.8 bits (68), Expect = 2.6
Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 19/63 (30%)
Query: 249 GSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVG-------SGAPGEPAEPG 301
G G P GP +G G DP G GVG G PG+P EPG
Sbjct: 971 GQGGLEGPSGPIGPKGERGAKGDP------------GAPGVGLRGEMGPPGIPGQPGEPG 1018
Query: 302 RAR 304
A+
Sbjct: 1019 YAK 1021
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 47.0 bits (110), Expect = 4e-05
Identities = 54/175 (30%), Positives = 66/175 (37%), Gaps = 32/175 (18%)
Query: 223 ITSGERAASAPRQESHNFAKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRT 282
+ G AA P FA A YG G P + PPG P P P P
Sbjct: 243 LRGGAAAAGDPGAFLPGFAAYGAYGYGYGLAL----PAYGAPPPGPAPHPHPHPH----- 293
Query: 283 SAGLAGVGSGAPGE-PAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAA 341
+ A + AP + PGRA AP P + A AGA + P PA A
Sbjct: 294 AFAFAAAAAAAPCQLSVPPGRAAAPPPGPPT-------------ASVFAGAGSAPAPAPA 340
Query: 342 QGARGSWPSPRCLPSDGGAR-------EAPPTSAPHPRRPAGSPPALADREGRRS 389
G+ G P P LP+ GA A S P AG P AL R+G ++
Sbjct: 341 SGS-GPGPGPAGLPAFLGAELGCAKAFYAASLSPPAAGTAAGLPTALL-RQGLKT 393
Score = 42.0 bits (97), Expect = 0.001
Identities = 35/99 (35%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 275 LPTRA-PRTSAGLAGVGSGAPGEPAEPGRARAPRSAP--SSREPRQTKRRVGSRARAGAG 331
LP R+ PR + G P E AE A + S EPR + SR A A
Sbjct: 39 LPARSGPRAPRDVLPHGHEPPAEEAEADLAEDEEESGGCSDGEPRA----LASRGAAAAA 94
Query: 332 AVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPH 370
GP AAA+GA G P P PS G A +P P+
Sbjct: 95 GSPGPGAAAARGAAGPGPGP---PSGGAATRSPLVKPPY 130
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 47.0 bits (110), Expect = 4e-05
Identities = 48/151 (31%), Positives = 57/151 (37%), Gaps = 32/151 (21%)
Query: 259 PCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVG----SGAPGEPAEPGRARAP--RSAPSS 312
P A P P P P P AP + A S P PA P R+P +AP
Sbjct: 500 PSTAVPTPATTPAPAPAPAPAPAPALASAATKERTESEVPPRPASPKVTRSPPETAAPVE 559
Query: 313 REPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPR 372
R+TKR +R T P P G+R S P+P P G +P T PR
Sbjct: 560 DMARRTKRPAPARP-------TMP-PPQVSGSRSSPPAPPLPPGSG----SPGTPQALPR 607
Query: 373 RPAGS--------------PPALADREGRRS 389
R GS PP A R+ RRS
Sbjct: 608 RLVGSSLRAPTVPPPLPPTPPQPARRQSRRS 638
Score = 33.1 bits (74), Expect = 0.53
Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 12/113 (10%)
Query: 250 SGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRS- 308
SG+R+ P P G G P LP R +S V P P +P R ++ RS
Sbjct: 581 SGSRSSPPAPPLPPGS-GSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPARRQSRRSP 639
Query: 309 ------APSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLP 355
+P P ++ GA G P A G P+P +P
Sbjct: 640 ASPSPASPGPASPSPVSLSNPAQVDLGAATAEGGAPEAISGV----PTPPAIP 688
>gi|239756163 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 46.6 bits (109), Expect = 5e-05
Identities = 39/112 (34%), Positives = 46/112 (41%), Gaps = 22/112 (19%)
Query: 280 PRTSAGLAGVGSGAPGEPAEPGRARAPRSA----------PSSREPRQTKRRVGSRARAG 329
P TS+ + AP + PGRAR+PR+ PS PR +G R R G
Sbjct: 79 PETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-G 137
Query: 330 AGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSPPAL 381
G GP PA + P PRCLP G P T P P PP L
Sbjct: 138 PGGHKGPGPARGR------PCPRCLP---GLPGLPITHIRFPAAPL--PPRL 178
>gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo
sapiens]
Length = 193
Score = 46.6 bits (109), Expect = 5e-05
Identities = 39/112 (34%), Positives = 46/112 (41%), Gaps = 22/112 (19%)
Query: 280 PRTSAGLAGVGSGAPGEPAEPGRARAPRSA----------PSSREPRQTKRRVGSRARAG 329
P TS+ + AP + PGRAR+PR+ PS PR +G R R G
Sbjct: 79 PETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-G 137
Query: 330 AGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSPPAL 381
G GP PA + P PRCLP G P T P P PP L
Sbjct: 138 PGGHKGPGPARGR------PCPRCLP---GLPGLPITHIRFPAAPL--PPRL 178
>gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo
sapiens]
Length = 193
Score = 46.6 bits (109), Expect = 5e-05
Identities = 39/112 (34%), Positives = 46/112 (41%), Gaps = 22/112 (19%)
Query: 280 PRTSAGLAGVGSGAPGEPAEPGRARAPRSA----------PSSREPRQTKRRVGSRARAG 329
P TS+ + AP + PGRAR+PR+ PS PR +G R R G
Sbjct: 79 PETSSSKQHFRTKAPRNLSPPGRARSPRNGPPLLVSHTGFPSPNRPRPAPHLLGHRLR-G 137
Query: 330 AGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSPPAL 381
G GP PA + P PRCLP G P T P P PP L
Sbjct: 138 PGGHKGPGPARGR------PCPRCLP---GLPGLPITHIRFPAAPL--PPRL 178
>gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 46.6 bits (109), Expect = 5e-05
Identities = 46/157 (29%), Positives = 58/157 (36%), Gaps = 15/157 (9%)
Query: 249 GSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGR------ 302
G A AQ GG C A G P P+ G G G AP P PG
Sbjct: 214 GGRAPAQAGGLCSAAPGGGH-----PAPSWVAFAHTGAWGTGLPAPHVPCAPGALPQGAF 268
Query: 303 -ARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAR 361
++A R+AP+ + + S+ G PA GA +PR P G +R
Sbjct: 269 VSQAARAAPALQPSQAAPAEGVSQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSR 328
Query: 362 E---APPTSAPHPRRPAGSPPALADREGRRSLVPQTS 395
E P P A PA A +G+ L P TS
Sbjct: 329 EDRDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTS 365
Score = 34.3 bits (77), Expect = 0.24
Identities = 52/178 (29%), Positives = 65/178 (36%), Gaps = 37/178 (20%)
Query: 248 YGSGARAQPGGPCWAQGPPGRLPDPI-------PLPTRAPRTSAGLAGVGSGAPGE---- 296
+G+G A P PC PG LP P P +A GV AP
Sbjct: 247 WGTGLPA-PHVPC----APGALPQGAFVSQAARAAPALQPSQAAPAEGVSQPAPARGDFA 301
Query: 297 ---PAEPGRA----RAPRSAP---SSREPRQTKRRVGSRARAGAGAVTGPCPAAAQG--- 343
PA P A +APR P SRE R +R A A GP A QG
Sbjct: 302 YAAPAPPDGALSHPQAPRWPPHPGKSREDRDPQR--DGLPGPCAVAQPGPAQAGPQGQGV 359
Query: 344 -----ARGS-WPSPRCLPSDGGAREAPPTSAPHPRRPAGSPPALADREGRRSLVPQTS 395
++GS W P GA P A P +PA + + R+G+ +P S
Sbjct: 360 LAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASASARQGQMQGIPAPS 417
>gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 483
Score = 46.6 bits (109), Expect = 5e-05
Identities = 46/157 (29%), Positives = 58/157 (36%), Gaps = 15/157 (9%)
Query: 249 GSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGR------ 302
G A AQ GG C A G P P+ G G G AP P PG
Sbjct: 214 GGRAPAQAGGLCSAAPGGGH-----PAPSWVAFAHTGAWGTGLPAPHVPCAPGALPQGAF 268
Query: 303 -ARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAR 361
++A R+AP+ + + S+ G PA GA +PR P G +R
Sbjct: 269 VSQAARAAPALQPSQAAPAEGVSQPAPARGDFAYAAPAPPDGALSHPQAPRWPPHPGKSR 328
Query: 362 E---APPTSAPHPRRPAGSPPALADREGRRSLVPQTS 395
E P P A PA A +G+ L P TS
Sbjct: 329 EDRDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTS 365
Score = 28.9 bits (63), Expect = 9.9
Identities = 64/247 (25%), Positives = 83/247 (33%), Gaps = 32/247 (12%)
Query: 135 EREERRVPGST-RAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPFPAA 193
+ R PG RA A GG P AP S A + A GT L P P
Sbjct: 204 QNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAP---SWVAFAHTGAWGTGL----PAPHV 256
Query: 194 RCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCAEFYGSGAR 253
C GA+ + AA ++ A + + AP + +A A GA
Sbjct: 257 PCAP-GALPQGAFVSQAARAAPALQPSQAAPAEGVSQPAPARGDFAYA---APAPPDGAL 312
Query: 254 AQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSR 313
+ P P W P D R P+ GL G P A+PG A+A
Sbjct: 313 SHPQAPRWPPHPGKSRED------RDPQRD-GLPG-----PCAVAQPGPAQAGPQGQGVL 360
Query: 314 EPRQTKRRVGSRARAGAGAVTGPCPAAA--QGARGSWPSPRCLPSDGGAREAPPTSAPHP 371
P S+ G GP A A + G P P+ P D AR+ P P
Sbjct: 361 APPT------SQGSPWWGWGRGPQVAGAAWEPQAGEAPPPQPAPPDASARQGQMQGIPAP 414
Query: 372 RRPAGSP 378
+ P
Sbjct: 415 SQALQEP 421
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 46.6 bits (109), Expect = 5e-05
Identities = 57/189 (30%), Positives = 72/189 (38%), Gaps = 27/189 (14%)
Query: 152 GGRDKPGPRRPRA-APGARSGAAASVAAAGG----TRLAQQAPFPAARCRRRGAIRKPLH 206
G R P PRRPR APG+R+ A V A TR +++ P + R+ R
Sbjct: 987 GERPPPRPRRPRTQAPGSRADPAPRVPRAAALPEETRSSRRRRLPPRKDPRKRKARGGAW 1046
Query: 207 DVTAAAFIV-----LVELLFAITSGERAASAPRQESHNFAKGCAEFYGSGARAQPGGPCW 261
IV L E FA S E PR +G E Q
Sbjct: 1047 GKELILKIVQQKNRLREYDFASESEEDEQPPPRGPGFRGRRGRGEKRKEVELTQ------ 1100
Query: 262 AQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRAR-APRSAPSSREPRQTKR 320
G D P +A R AG G GAP P EPG +R P +P +R P ++
Sbjct: 1101 -----GPREDEPQKPRKAARQEAG----GDGAPANPEEPGGSRPGPGRSPQARGPSRS-L 1150
Query: 321 RVGSRARAG 329
G+ AR G
Sbjct: 1151 ETGAAAREG 1159
Score = 42.4 bits (98), Expect = 9e-04
Identities = 87/331 (26%), Positives = 119/331 (35%), Gaps = 64/331 (19%)
Query: 134 AEREERRVPGSTRAAALPGGRDKPGP-RRPRAAPGARSGAAASVAAAGGTRLAQQAPFPA 192
A R+E G+ PGG +PGP R P+A +RS + A GG + A + P A
Sbjct: 1113 AARQEAGGDGAPANPEEPGG-SRPGPGRSPQARGPSRSLETGAAAREGGPKCADR-PSVA 1170
Query: 193 ARCRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPR--QESHNFAKGCAEFYGS 250
+ + + T + E T+ E A + + + CA G
Sbjct: 1171 PKDPLQVPTNTETSEETRPSLDFPQEAKEPETAEESAPDSTEFTEALRSPPAACAGEMG- 1229
Query: 251 GARAQPGGPCWAQGPPGRLPDPIPLPT-----RAPRTSAGLAGVGS--GAPG-------- 295
A PG Q PP R P P+ AP S+ GVGS G PG
Sbjct: 1230 ---ASPGLLIPEQPPPSRHDTGTPKPSGSLANTAPHGSSPTPGVGSLLGGPGGTQAPVSH 1286
Query: 296 ----EPA-EPGRARAPRSAPSSR---EPRQTKRRVGSRARAGAGAVTGP--CPAAAQGAR 345
PA +PG AP + PSS +P ++ S AG P P A +G +
Sbjct: 1287 NSKDPPARQPGEFLAPVANPSSTACPKPSVLSSKISSFGCDPAGFNRDPLGVPVAKKGPQ 1346
Query: 346 GSWPSPRC----------------LPSDGGAREAPPTSAP------------HPRRPAGS 377
+ SP L AR+APP S+ P+ P S
Sbjct: 1347 -PYSSPHSELFLGPKDLAGCFLEELHPKPSARDAPPASSSCLCQDGEDAGSLEPQLPR-S 1404
Query: 378 PPALADREGRRSLVPQTSIQGQNFAQLSLAR 408
PP A+ E R+ P T F L + R
Sbjct: 1405 PPGTAETEPGRAASPPTLESSSLFPDLPVDR 1435
Score = 38.5 bits (88), Expect = 0.013
Identities = 72/280 (25%), Positives = 100/280 (35%), Gaps = 34/280 (12%)
Query: 139 RRVPGSTRAAALPGGRDKPGPR---RPRAAPGARSGAAASVAAAGGTRL--------AQQ 187
R+ G A A G + PGP P AAP + A A + + T L +
Sbjct: 750 RQFCGLLLARAKDGHQRSPGPPGLPSPPAAPRVPADAHAGLLSHAKTFLLAGDAQAEGKD 809
Query: 188 APFPAARCRRRGAIRKPL--HDVTAAAFIVLVELLFAITSGERAASAPRQESHNFAKGCA 245
P A PL D+ L L+ +G S + +F A
Sbjct: 810 DPLRTGFLPSLAATPFPLPASDLDMEDDAKLDSLITEALNGMEYQSDNPEIDSSFIDVFA 869
Query: 246 EFYGSGARAQPGG-PCWAQG---PPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPG 301
+ SG R G P ++ P + P P+P T P+T G A G P
Sbjct: 870 DEEPSGPRGPSSGHPLKSKAGVTPESKAPPPLPAATPDPQTPRP-GDRGCPARGRPKTRS 928
Query: 302 RARAPRSAPSSREPRQTKR----RVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSD 357
AP A + + RQ +R ++ + GA G + G R S PR +
Sbjct: 929 LGLAPTEADAPSQGRQQRRGKQLKLFRKDLDSGGAAEG--SGSGGGGRASGLRPR---RN 983
Query: 358 GGAREAPPTSAPHPRRP----AGSPPALADREGRRSLVPQ 393
G E PP P PRRP GS A R R + +P+
Sbjct: 984 DGLGERPP---PRPRRPRTQAPGSRADPAPRVPRAAALPE 1020
Score = 33.5 bits (75), Expect = 0.40
Identities = 36/116 (31%), Positives = 41/116 (35%), Gaps = 21/116 (18%)
Query: 294 PGEPAEPGRARAPRSAP------SSREPRQTKRRVGSR-----ARAGAGAVTGPCPAAAQ 342
PG PAEP A P P + PR+ RV + +R VT P PA
Sbjct: 2471 PGAPAEPSPAALPAQQPLEPLAQKCQPPRKKSHRVSGKERPNHSRGDPSHVTQPPPAQGS 2530
Query: 343 ----GARGSWPSPRCLPSDGGAREA---PPTSAPHP---RRPAGSPPALADREGRR 388
A GS S + P E P S P P R P REGRR
Sbjct: 2531 KEVLRAPGSPHSQQLHPPSPTEHEVDVKTPASKPRPDQAREDELHPKQAEKREGRR 2586
Score = 33.1 bits (74), Expect = 0.53
Identities = 41/192 (21%), Positives = 62/192 (32%), Gaps = 26/192 (13%)
Query: 253 RAQPGGPCWAQGPP--------GRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRAR 304
+A+PG G P G P P S L + P +P+ P R+
Sbjct: 3697 KAKPGPSSQGSGSPRPGTKTGGGSQPQP---------ASGQLQSETATTPAKPSFPSRSP 3747
Query: 305 APRSAPSSREPRQTKRRVGSRARAGAGAVTGP---CPAAAQGARGSWPSPRCLPSDGGAR 361
AP P+ + + + G GP ++ + +G P P S G
Sbjct: 3748 APERLPARAQAKSCTKGPREAGEQGPHGSLGPKEKGESSTKRKKGQVPGPARSESVGSFG 3807
Query: 362 EAPPTSAPHPRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARPWAGKRGHRQREP 421
AP PR P R L + QN + + + GH QR+
Sbjct: 3808 RAPSAPDKPPRTPR------KQATPSRVLPTKPKPNSQNKPRPPPSEQRKAEPGHTQRKD 3861
Query: 422 EALRALRAGQEL 433
+A G+ L
Sbjct: 3862 RLGKAFPQGRPL 3873
Score = 32.7 bits (73), Expect = 0.69
Identities = 78/354 (22%), Positives = 116/354 (32%), Gaps = 74/354 (20%)
Query: 112 FNSQYNKLVRTEHQR---RGILRPLAEREERR-----VPGSTRAAALPGGRDKPGPRRP- 162
F+ NK +R Q RG+ RP A ++ R +P R A+PG PG RP
Sbjct: 3405 FDRHMNKHLRGGRQPFAFRGVRRPGAPGQKARALEGTLPSKRRRVAMPGSAPGPGEDRPP 3464
Query: 163 ---------------------RAAPGARSGAAASVAAA--------GGTRLAQQ------ 187
AP G ++ G L
Sbjct: 3465 PRGSSPILSEGSLPALLHLCSEVAPSTTKGWPETLERPVDPVTHPIRGCELPSNHQECPP 3524
Query: 188 ---APFPAAR------CRRRGAIRKPLHDVTAAAFIVLVELLFAITSGERAASAPRQESH 238
+PFPAA C GA+ +P ++ + + L++ + + A Q++
Sbjct: 3525 PSLSPFPAALADGRGDCALDGALERPENEASPGSPGPLLQQALPLGASLPRPGARGQDAE 3584
Query: 239 NFAKGCAEFYGSGARAQPG--GPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGE 296
A SG R PG G C P + L +S+ + V G P
Sbjct: 3585 GKR---APLVFSGKRRAPGARGRC----APDHFQEDHLLQKEKEVSSSHM--VSEGGPRG 3635
Query: 297 PAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPC-PAAAQGARGSWPSPRCLP 355
G A P SS + R S A + A+ P P A G+ P
Sbjct: 3636 TFHKGSATKPAGCQSSSKDR-------SAASTPSKALKFPVHPRKAVGSLA--PGELARG 3686
Query: 356 SDGGAREAPPTSAPHPRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARP 409
++ G + A P + P P P + G S S Q Q+ + A+P
Sbjct: 3687 TENGMKPATPKAKPGPSSQGSGSPRPGTKTGGGSQPQPASGQLQSETATTPAKP 3740
Score = 30.8 bits (68), Expect = 2.6
Identities = 59/218 (27%), Positives = 76/218 (34%), Gaps = 29/218 (13%)
Query: 218 ELLFAITSGERAASAPRQESHNFAKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPT 277
+L A++S A SAPR S + K + + G +GPP LP
Sbjct: 350 DLSGALSSPGAAHSAPRPFSDSLHKSLTKILPERPPSAQDGLGSTRGPPSSLPQ------ 403
Query: 278 RAPRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPC 337
R G A SG P P A P +R P+ A GP
Sbjct: 404 ---RHFPGQAYRASGVDTSPGPPDTELAAPGPPPARLPQLW----DPTAAPYPTPPGGPL 456
Query: 338 PAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSPPALADREGRRSL----VPQ 393
A PSP G R P SAP P P P A G L P
Sbjct: 457 AATRSMFFNGQPSP-------GQRLCLPQSAPLP-WPQVLPTARPSPHGMEMLSRLPFPA 508
Query: 394 TSIQGQNFAQLSLARPWAGKR-GHRQREPEALRALRAG 430
+ Q +Q +L AGK G R++ P A+R+ + G
Sbjct: 509 GGPEWQGGSQGALGT--AGKTPGPREKLP-AVRSSQGG 543
Score = 30.0 bits (66), Expect = 4.4
Identities = 35/126 (27%), Positives = 46/126 (36%), Gaps = 20/126 (15%)
Query: 266 PGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRA-----RAPRSAPSSREPRQTKR 320
PGR P +P + G+ S G+ A+ GR R AP P + R
Sbjct: 2237 PGRATSPPLAGAVSPSVAVRATGLSSTPTGDEAQAGRGLPGPDPQSRGAPPHTNPDRMPR 2296
Query: 321 RVGS-----RARAG--AGAVTGPCPAAAQGARGSWP-SPRCLPSDGGAREAPPTSAPHPR 372
S AR G G P +G+ P SP CL + G TS+ P
Sbjct: 2297 GHSSYSPSNTARLGHREGQAVTAVPTEPPTLQGAGPDSPACLEGEMG------TSSKEPE 2350
Query: 373 RPAGSP 378
P G+P
Sbjct: 2351 DP-GTP 2355
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 46.6 bits (109), Expect = 5e-05
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 13/170 (7%)
Query: 226 GERAASAPRQESHNFAKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAG 285
G R A + + A+ A+ G +A PG P +Q P R P +R P+T
Sbjct: 3724 GSRQAHSGPAALQSKAEPQAQPQLQGRQAAPG-PQQSQSPSSR-QIPSGAASRQPQTQQQ 3781
Query: 286 LAGVGSGAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARAGAGAVTGPCPAA---AQ 342
G+G P + R + +S P++R + + + G TGP PA A+
Sbjct: 3782 QQGLGLQPPQQALTQARLQQ-QSQPTTRGSAPAASQPAGKPQPGPSTATGPQPAGPPRAE 3840
Query: 343 GARGSWPSPRCLPSDGGAREAPPTSAPHP------RRPAGSPPALADREG 386
GS + + P G A +A P P P RP G+P A A + G
Sbjct: 3841 QTNGSKGTAKA-PQQGRAPQAQPAPGPGPAGVKAGARPGGTPGAPAGQPG 3889
Score = 38.1 bits (87), Expect = 0.016
Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 8/142 (5%)
Query: 249 GSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRS 308
G+ RA P +GP G PLP +A S + + S A + A+P RA P
Sbjct: 542 GAPHRASGTSPLKQKGPQGLGQPSGPLPAKASPLSTKASPLPSKASPQ-AKPLRASEPSK 600
Query: 309 APSSREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPP--- 365
PSS + ++T+ + T P PA + G + P EAP
Sbjct: 601 TPSSVQEKKTRVPTKAEPMPKPPPETTPTPATPKVKSGVRRAEPATPVVKAVPEAPKGGE 660
Query: 366 ----TSAPHPRRPAGSPPALAD 383
P+ + + SP +L+D
Sbjct: 661 AEDLVGKPYSQDASRSPQSLSD 682
Score = 32.7 bits (73), Expect = 0.69
Identities = 35/122 (28%), Positives = 42/122 (34%), Gaps = 16/122 (13%)
Query: 256 PGGPCWAQGPPGRLPDPIPLPTRAPRTSAG---LAGVGSG-APGEPAEPGRARAPRSAPS 311
PGG PG P P P + P AG L G+ + P PG P P
Sbjct: 18 PGG-----AGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPGPGPGPG 72
Query: 312 SREPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHP 371
P T RR+ + G P P A SPR + G A + A P
Sbjct: 73 ---PGSTSRRLDPKEPLGNQRAASPTPKQASATTPGHESPRETRAQGPAGQ----EADGP 125
Query: 372 RR 373
RR
Sbjct: 126 RR 127
Score = 32.7 bits (73), Expect = 0.69
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 26/129 (20%)
Query: 91 PGKCKAGGVGFRALCSGQANCFNSQYNKLVRTEHQRRGI-LRP---------LAEREERR 140
PG ++ R + SG A+ + +T+ Q++G+ L+P L ++ +
Sbjct: 3754 PGPQQSQSPSSRQIPSGAAS-------RQPQTQQQQQGLGLQPPQQALTQARLQQQSQPT 3806
Query: 141 VPGSTRAAALPGGRDKPGPRR---------PRAAPGARSGAAASVAAAGGTRLAQQAPFP 191
GS AA+ P G+ +PGP PRA S A G AQ AP P
Sbjct: 3807 TRGSAPAASQPAGKPQPGPSTATGPQPAGPPRAEQTNGSKGTAKAPQQGRAPQAQPAPGP 3866
Query: 192 AARCRRRGA 200
+ GA
Sbjct: 3867 GPAGVKAGA 3875
Score = 31.6 bits (70), Expect = 1.5
Identities = 34/109 (31%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 313 REPRQTKRRVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAP-PTSAPHP 371
R P ++ + S G V PAAA+ PS +P G ARE P PT+ P
Sbjct: 2260 RYPAPSRFPIASSVPPAEGPVYLGKPAAAKAPGAGGPSRPEMPV-GAAREEPLPTTTPAA 2318
Query: 372 RRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARPWAGKRGHRQRE 420
+ A PA A G++ P + G LS RP K Q E
Sbjct: 2319 IKEAAGAPAPAPLAGQKP--PADAAPGGGSGALS--RPGFEKEEASQEE 2363
Score = 30.8 bits (68), Expect = 2.6
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 225 SGERAASAPRQESHNFAKGCAEFYGSGARAQPGGPCWAQGPPGRLPDPIPLPTRAPRTSA 284
+G + A PR E N +KG A+ G Q AQ PG P P +A
Sbjct: 3829 TGPQPAGPPRAEQTNGSKGTAKAPQQGRAPQ------AQPAPG----PGPAGVKAGARPG 3878
Query: 285 GLAGVGSGAPGEPAE 299
G G +G PG E
Sbjct: 3879 GTPGAPAGQPGADGE 3893
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,427,031
Number of Sequences: 37866
Number of extensions: 1438443
Number of successful extensions: 17430
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 1506
Number of HSP's that attempted gapping in prelim test: 10778
Number of HSP's gapped (non-prelim): 6601
length of query: 447
length of database: 18,247,518
effective HSP length: 105
effective length of query: 342
effective length of database: 14,271,588
effective search space: 4880883096
effective search space used: 4880883096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.