Guide to the Human Genome
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Name: LOC100127930 Sequence: fasta or formatted (143aa) NCBI GI: 169210045
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {447aa} PREDICTED: hypothetical protein
alt mRNA {143aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.1         23           3
 C cysteine            2.1          3           1
 D aspartate           4.9          7           2
 E glutamate           3.5          5           1
 F phenylalanine       0.7          1           1
 G glycine            10.5         15           2
 H histidine           1.4          2           1
 I isoleucine          2.1          3           1
 K lysine              0.7          1           1
 L leucine             9.1         13           2
 M methionine          0.7          1           1
 N asparagine          1.4          2           1
 P proline            14.0         20           2
 Q glutamine           5.6          8           1
 R arginine           14.0         20           2
 S serine              7.0         10           1
 T threonine           2.1          3           1
 V valine              1.4          2           1
 W tryptophan          2.8          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100127930          1.000   PREDICTED: hypothetical protein 
LOC100127930          0.830   PREDICTED: hypothetical protein 
LOC100290023          0.076   PREDICTED: hypothetical protein XP_002348147 
LOC100290265          0.054   PREDICTED: hypothetical protein XP_002346787 
TAF4                  0.054   TBP-associated factor 4 
MAPK7                 0.054   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.054   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.054   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.054   mitogen-activated protein kinase 7 isoform 2 
SASH1                 0.051   SAM and SH3 domain containing 1 
DMWD                  0.051   dystrophia myotonica-containing WD repeat motif prot...
TTMA                  0.051   hypothetical protein LOC645369 
LOC100293818          0.051   PREDICTED: hypothetical protein 
SAMD1                 0.051   sterile alpha motif domain containing 1 
LOC100292447          0.047   PREDICTED: similar to coiled-coil domain containing...
LOC100131102          0.047   PREDICTED: hypothetical protein 
ZFPM1                 0.047   zinc finger protein, multitype 1 
LOC100128440          0.043   PREDICTED: hypothetical protein 
LOC100128440          0.043   PREDICTED: hypothetical protein 
LOC100128440          0.043   PREDICTED: hypothetical protein 
LOC646396             0.043   PREDICTED: similar to hCG2042704 
MLL2                  0.043   myeloid/lymphoid or mixed-lineage leukemia 2 
MAST3                 0.043   microtubule associated serine/threonine kinase 3 [H...
LOC100131102          0.043   PREDICTED: hypothetical protein 
LOC100130360          0.043   PREDICTED: hypothetical protein 
SRCAP                 0.043   Snf2-related CBP activator protein 
ZIC5                  0.043   zinc finger protein of the cerebellum 5 
DDN                   0.043   dendrin 
LOC284297             0.040   hypothetical protein LOC284297 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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