Guide to the Human Genome
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Name: LOC100293818 Sequence: fasta or formatted (380aa) NCBI GI: 239753673
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         51           3
 C cysteine            2.9         11           2
 D aspartate           1.6          6           1
 E glutamate           3.7         14           1
 F phenylalanine       2.4          9           1
 G glycine            10.8         41           2
 H histidine           3.9         15           1
 I isoleucine          2.1          8           1
 K lysine              1.1          4           1
 L leucine             7.1         27           2
 M methionine          1.6          6           1
 N asparagine          1.6          6           1
 P proline            12.6         48           3
 Q glutamine           4.2         16           1
 R arginine           16.1         61           3
 S serine              6.6         25           2
 T threonine           1.6          6           1
 V valine              5.8         22           1
 W tryptophan          0.8          3           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290009          0.494   PREDICTED: hypothetical protein XP_002346608 
LOC100288104          0.419   PREDICTED: hypothetical protein XP_002342450 
SPEG                  0.031   SPEG complex locus 
LOC100127930          0.029   PREDICTED: hypothetical protein 
TAF4                  0.028   TBP-associated factor 4 
LOC100130360          0.026   PREDICTED: hypothetical protein 
LOC643355             0.025   PREDICTED: hypothetical protein 
LOC643355             0.025   PREDICTED: hypothetical protein 
LOC100131455          0.025   PREDICTED: hypothetical protein 
LOC100131455          0.025   PREDICTED: hypothetical protein 
LOC100131455          0.025   PREDICTED: hypothetical protein 
ZNF219                0.025   zinc finger protein 219 
ZNF219                0.025   zinc finger protein 219 
ZNF219                0.025   zinc finger protein 219 
RAB11FIP3             0.024   rab11-family interacting protein 3 isoform 1 
LOC100286967          0.024   PREDICTED: hypothetical protein XP_002342247 
PHRF1                 0.024   PHD and ring finger domains 1 
SRRM2                 0.024   splicing coactivator subunit SRm300 
LOC100129571          0.024   PREDICTED: similar to hCG1646049 
LOC100292934          0.024   PREDICTED: hypothetical protein 
LOC100129571          0.024   PREDICTED: similar to hCG1646049 
LOC100129571          0.024   PREDICTED: similar to hCG1646049 
LOC100294010          0.022   PREDICTED: hypothetical protein 
LOC100290812          0.022   PREDICTED: hypothetical protein XP_002347678 
LOC100291514          0.022   PREDICTED: hypothetical protein XP_002347163 
ZNF716                0.022   PREDICTED: zinc finger protein 716 
LOC100288205          0.022   PREDICTED: hypothetical protein XP_002343496 
LOC100289311          0.022   PREDICTED: hypothetical protein XP_002343026 
ABCB10                0.022   ATP-binding cassette, sub-family B, member 10 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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