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Search of human proteins with 169208084
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169208084 PREDICTED: hypothetical protein [Homo sapiens]
(266 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169208084 PREDICTED: hypothetical protein [Homo sapiens] 561 e-160
gi|169208912 PREDICTED: hypothetical protein [Homo sapiens] 556 e-159
gi|169208667 PREDICTED: hypothetical protein [Homo sapiens] 556 e-159
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 50 2e-06
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 50 2e-06
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 49 6e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 46 4e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 44 1e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 44 1e-04
gi|239755873 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 44 1e-04
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 43 2e-04
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 43 3e-04
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 43 3e-04
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 43 3e-04
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 43 3e-04
gi|239755333 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|56606142 complement component 1, q subcomponent-like 4 [Homo ... 41 0.001
gi|239753883 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo ... 41 0.001
gi|239743072 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo ... 41 0.001
gi|239508718 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 41 0.001
gi|73476377 LBXCOR1 homolog [Homo sapiens] 41 0.001
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|5032105 small optic lobes [Homo sapiens] 40 0.002
gi|169169912 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|24497460 Shaw-related voltage-gated potassium channel protein... 40 0.003
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 40 0.003
>gi|169208084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 561 bits (1446), Expect = e-160
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MLLPEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGP 60
MLLPEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGP
Sbjct: 1 MLLPEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGP 60
Query: 61 AGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRI 120
AGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRI
Sbjct: 61 AGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRI 120
Query: 121 FLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPL 180
FLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPL
Sbjct: 121 FLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPL 180
Query: 181 RPGAVRKSQPPGLRRQTAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGEL 240
RPGAVRKSQPPGLRRQTAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGEL
Sbjct: 181 RPGAVRKSQPPGLRRQTAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGEL 240
Query: 241 GAPGGHCTRALASTSRAPPRRGGDPG 266
GAPGGHCTRALASTSRAPPRRGGDPG
Sbjct: 241 GAPGGHCTRALASTSRAPPRRGGDPG 266
>gi|169208912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 556 bits (1432), Expect = e-159
Identities = 265/266 (99%), Positives = 265/266 (99%)
Query: 1 MLLPEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGP 60
MLLPEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGP
Sbjct: 1 MLLPEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGP 60
Query: 61 AGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRI 120
AGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRI
Sbjct: 61 AGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRI 120
Query: 121 FLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPL 180
FLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVR RRPL
Sbjct: 121 FLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRRRRPL 180
Query: 181 RPGAVRKSQPPGLRRQTAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGEL 240
RPGAVRKSQPPGLRRQTAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGEL
Sbjct: 181 RPGAVRKSQPPGLRRQTAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGEL 240
Query: 241 GAPGGHCTRALASTSRAPPRRGGDPG 266
GAPGGHCTRALASTSRAPPRRGGDPG
Sbjct: 241 GAPGGHCTRALASTSRAPPRRGGDPG 266
>gi|169208667 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 556 bits (1432), Expect = e-159
Identities = 265/266 (99%), Positives = 265/266 (99%)
Query: 1 MLLPEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGP 60
MLLPEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGP
Sbjct: 1 MLLPEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGP 60
Query: 61 AGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRI 120
AGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRI
Sbjct: 61 AGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRI 120
Query: 121 FLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPL 180
FLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVR RRPL
Sbjct: 121 FLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRRRRPL 180
Query: 181 RPGAVRKSQPPGLRRQTAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGEL 240
RPGAVRKSQPPGLRRQTAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGEL
Sbjct: 181 RPGAVRKSQPPGLRRQTAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGEL 240
Query: 241 GAPGGHCTRALASTSRAPPRRGGDPG 266
GAPGGHCTRALASTSRAPPRRGGDPG
Sbjct: 241 GAPGGHCTRALASTSRAPPRRGGDPG 266
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 50.1 bits (118), Expect = 2e-06
Identities = 72/252 (28%), Positives = 87/252 (34%), Gaps = 58/252 (23%)
Query: 28 LRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMGVS 87
L R PP PPP PG P R G P + GP G SG G G
Sbjct: 61 LYRVSAPPPAPPPPPPPGGPSRS-ERPRAGLRPGAFVSPGPLGRR--ASCSGRAGSAG-- 115
Query: 88 LTVSLSFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGLQWER 147
+ S + S+++ PAR+ A LR F +S P A G R G R
Sbjct: 116 -RLRCSAAALSAAQRGGPARAQVPPA----LRTFSPGPAS---PPRASPGGRPGSEARGR 167
Query: 148 PAAALRTRLP-------------------RLSWLPSAGPPRPGLSVRWRRPLRPGAVRKS 188
A R+P +L P+ GPP PG+S R P+ V +
Sbjct: 168 SGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQ 227
Query: 189 Q--PPG------------------LRRQTAGGRARLGGARAVDPGTGWGHCACSRRRGER 228
PPG LRR A GRA GG G G ACS G
Sbjct: 228 HRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGP------PGGGIPACSIGPGLA 281
Query: 229 RSRRAAGVPGEL 240
R G+P L
Sbjct: 282 RLAALGGLPSIL 293
Score = 33.1 bits (74), Expect = 0.26
Identities = 38/136 (27%), Positives = 46/136 (33%), Gaps = 23/136 (16%)
Query: 140 AGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPLRPGAVRKSQPPGLRRQTAG 199
AG W RP A+ SAG P L +R P A PPG ++
Sbjct: 40 AGSKLWRRPRGAV-----------SAGAPGSPL---YRVSAPPPAPPPPPPPGGPSRSER 85
Query: 200 GRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGG-------HCTRALA 252
RA L V PG +CS R G R + GG R +
Sbjct: 86 PRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFS 145
Query: 253 STSRAPPRR--GGDPG 266
+PPR GG PG
Sbjct: 146 PGPASPPRASPGGRPG 161
Score = 29.3 bits (64), Expect = 3.7
Identities = 51/187 (27%), Positives = 61/187 (32%), Gaps = 29/187 (15%)
Query: 16 AFTLDQRDGKQRLR-----RTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCG 70
A + QR G R + RT P SPP A PG R G E G +G E
Sbjct: 123 ALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGG-----RPGSEARGRSGAECARRVP 177
Query: 71 AAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLR---IFLRTASS 127
G + G G S + PAR S R +
Sbjct: 178 LHHGPPGASGVG----------SERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQ 227
Query: 128 ELLPAIAPDGRRAGGLQWERPAAAL-RTRLPRLSWLPSAGPPRPGLSVRWRRPLRPGAVR 186
P A R G ERPA AL R R P + GPP G+ + PG R
Sbjct: 228 HRWPPGASPSRSLGEAGGERPARALRRPRAPGRA--GGGGPPGGGIPA---CSIGPGLAR 282
Query: 187 KSQPPGL 193
+ GL
Sbjct: 283 LAALGGL 289
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 50.1 bits (118), Expect = 2e-06
Identities = 72/252 (28%), Positives = 87/252 (34%), Gaps = 58/252 (23%)
Query: 28 LRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMGVS 87
L R PP PPP PG P R G P + GP G SG G G
Sbjct: 61 LYRVSAPPPAPPPPPPPGGPSRS-ERPRAGLRPGAFVSPGPLGRR--ASCSGRAGSAG-- 115
Query: 88 LTVSLSFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGLQWER 147
+ S + S+++ PAR+ A LR F +S P A G R G R
Sbjct: 116 -RLRCSAAALSAAQRGGPARAQVPPA----LRTFSPGPAS---PPRASPGGRPGSEARGR 167
Query: 148 PAAALRTRLP-------------------RLSWLPSAGPPRPGLSVRWRRPLRPGAVRKS 188
A R+P +L P+ GPP PG+S R P+ V +
Sbjct: 168 SGAECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQ 227
Query: 189 Q--PPG------------------LRRQTAGGRARLGGARAVDPGTGWGHCACSRRRGER 228
PPG LRR A GRA GG G G ACS G
Sbjct: 228 HRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGP------PGGGIPACSIGPGLA 281
Query: 229 RSRRAAGVPGEL 240
R G+P L
Sbjct: 282 RLAALGGLPSIL 293
Score = 33.1 bits (74), Expect = 0.26
Identities = 38/136 (27%), Positives = 46/136 (33%), Gaps = 23/136 (16%)
Query: 140 AGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPLRPGAVRKSQPPGLRRQTAG 199
AG W RP A+ SAG P L +R P A PPG ++
Sbjct: 40 AGSKLWRRPRGAV-----------SAGAPGSPL---YRVSAPPPAPPPPPPPGGPSRSER 85
Query: 200 GRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGG-------HCTRALA 252
RA L V PG +CS R G R + GG R +
Sbjct: 86 PRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFS 145
Query: 253 STSRAPPRR--GGDPG 266
+PPR GG PG
Sbjct: 146 PGPASPPRASPGGRPG 161
Score = 29.3 bits (64), Expect = 3.7
Identities = 51/187 (27%), Positives = 61/187 (32%), Gaps = 29/187 (15%)
Query: 16 AFTLDQRDGKQRLR-----RTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCG 70
A + QR G R + RT P SPP A PG R G E G +G E
Sbjct: 123 ALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGG-----RPGSEARGRSGAECARRVP 177
Query: 71 AAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLR---IFLRTASS 127
G + G G S + PAR S R +
Sbjct: 178 LHHGPPGASGVG----------SERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQ 227
Query: 128 ELLPAIAPDGRRAGGLQWERPAAAL-RTRLPRLSWLPSAGPPRPGLSVRWRRPLRPGAVR 186
P A R G ERPA AL R R P + GPP G+ + PG R
Sbjct: 228 HRWPPGASPSRSLGEAGGERPARALRRPRAPGRA--GGGGPPGGGIPA---CSIGPGLAR 282
Query: 187 KSQPPGL 193
+ GL
Sbjct: 283 LAALGGL 289
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 48.5 bits (114), Expect = 6e-06
Identities = 74/242 (30%), Positives = 83/242 (34%), Gaps = 36/242 (14%)
Query: 33 RAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMGVSLTVSL 92
R PP P PA PG G G G A G G CG P C+ G V G + + SL
Sbjct: 222 RPPPPRPSPA-PGLTG-------RGQGRARGAVGLDCGCRPRPCSFGQPDV-GSAPSRSL 272
Query: 93 SFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGLQWERPAAAL 152
S P S + R R F T SE P G ++P A
Sbjct: 273 RGCSLRFRNTPPPIPGSDQPSSHGRPR-FRETGDSEDCPPF------RAGTPPQQPTA-- 323
Query: 153 RTRLPRLSWLPSAGPPR-PGLSVRWRRPLRPGAVRKSQPPGLRRQTAGGRARLGGA--RA 209
P W GP R PG RW PL A ++ PG A R R GG A
Sbjct: 324 ----PSSEW---PGPQRSPGTGPRWTAPLPRPAPLPAKRPG--DSPASKRPRPGGVSPEA 374
Query: 210 VDPGTGWGHCACSRRRGERRSRRAAGVP----GELGAPG--GHCTRALASTSRAPPRRGG 263
DP G S GE + G G L G G S APPR G
Sbjct: 375 RDPPKGENPLCSSEAAGETGPTQVRGPDALGGGRLQGKGREGKAPGEGVSPRPAPPRLGK 434
Query: 264 DP 265
P
Sbjct: 435 PP 436
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 45.8 bits (107), Expect = 4e-05
Identities = 75/254 (29%), Positives = 83/254 (32%), Gaps = 71/254 (27%)
Query: 33 RAPPQSPPPAG----PGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCAS--GGCGVMGV 86
R P P PAG PGA G P +G+ G A G+AG P A P G G G G
Sbjct: 802 RGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGA 861
Query: 87 SLTVSLSFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGLQWE 146
AR SA P G A G
Sbjct: 862 K-----------------GARGSA-----------------------GPPG--ATGF--- 876
Query: 147 RPAAALRTRLPRLSW-LPSAGPPRPGLSVRWRRPL-------RPGAVRKSQPPGLRRQTA 198
P AA R P S GPP P + P RPG V PPG A
Sbjct: 877 -PGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPG----PA 931
Query: 199 GGRARLGG-ARAVDPGTGWGHCACSRR-----RGERRSRRAAGVPGELGAPGGHCTRALA 252
G + G A PGT +R G+R R G+PG G PG A
Sbjct: 932 GEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSG-A 990
Query: 253 STSRAPPRRGGDPG 266
S R PP G PG
Sbjct: 991 SGERGPPGPMGPPG 1004
Score = 36.6 bits (83), Expect = 0.023
Identities = 32/73 (43%), Positives = 34/73 (46%), Gaps = 16/73 (21%)
Query: 31 TGRAPPQSP-----PPAGPGAPGAPWRRGDEGP----GPAG--GEAG--GPCGAA-PGG- 75
TG A P P PP PGA GA G +GP GP G GE G GP GAA P G
Sbjct: 328 TGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGN 387
Query: 76 -CASGGCGVMGVS 87
A G G G +
Sbjct: 388 PGADGQPGAKGAN 400
Score = 36.2 bits (82), Expect = 0.031
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 22 RDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAG--GPCGAAPGGCASG 79
RDG + + PP PGAPGAP G G GE G GP G A G
Sbjct: 1026 RDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARG 1085
Query: 80 GCGVMG 85
G G
Sbjct: 1086 PAGPQG 1091
Score = 34.3 bits (77), Expect = 0.12
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 32 GRAPPQSPPPAGP----GAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMGV 86
G+ P PAG G PG P G++G A G AG P P G A G GV+G+
Sbjct: 906 GKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIA-GQRGVVGL 963
Score = 33.9 bits (76), Expect = 0.15
Identities = 72/272 (26%), Positives = 84/272 (30%), Gaps = 65/272 (23%)
Query: 32 GRAPPQSPP-PAGP----GAPGAPWRRGDEG----PGPAGGEAGGPCGAAPGGCASGGCG 82
G + PQ P P GP G PGAP +GD G PGP G + GP G A G G
Sbjct: 416 GPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQ--GPPGPAGEEGKRGARG 473
Query: 83 VMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGG 142
G + P A A P P G +
Sbjct: 474 EPGPTGLPGPPGERGGPGSRGFPGADGVAGPKG--------PAGERGSP--GPAGPKGSP 523
Query: 143 LQWERPAAALRTRLPRLSWLPSAGPP-----RPGLSVRWRRPLRPGAVRKSQPPGLRRQT 197
+ RP A L+ P + P PG + + RP PG PPG R Q
Sbjct: 524 GEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPG------PPGARGQA 577
Query: 198 -----------------AGGRARLGGARAVDPGTGWGHCAC------SRRRGERRSRRAA 234
AG R G AV P G + GER + A
Sbjct: 578 GVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPA 637
Query: 235 GVPGELGAPGGHCTRALASTSRAPPRRGGDPG 266
G PG G PG PP G PG
Sbjct: 638 GSPGFQGLPG----------PAGPPGEAGKPG 659
Score = 33.5 bits (75), Expect = 0.20
Identities = 69/254 (27%), Positives = 84/254 (33%), Gaps = 39/254 (15%)
Query: 35 PPQSP-------PPAGPGAPGAPWRRGDEG-PGPAG-----GEAG--------GPCGAAP 73
PP +P PP PG PGA G G PGP G GEAG GP G
Sbjct: 192 PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQG 251
Query: 74 GGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAI 133
G G+ G+ S L + PA A ++ P
Sbjct: 252 ARGLPGTAGLPGMKGHRGFSGLDGAKGDAG-PAGPKGEPGSPGE-----NGAPGQMGPRG 305
Query: 134 APDGRRAGGLQWERPAAALRTRLPRLSWLPSAGPPRP-GLSVRWRRPLRPGAVRKSQPPG 192
P R G PA A +AGPP P G + P GA ++ P G
Sbjct: 306 LPGERGRPGA--PGPAGARGND----GATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQG 359
Query: 193 LRRQTAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTRALA 252
R + G + G P G G+ ++ A G PG GAPG R
Sbjct: 360 -PRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARG-- 416
Query: 253 STSRAPPRRGGDPG 266
P GG PG
Sbjct: 417 --PSGPQGPGGPPG 428
Score = 33.1 bits (74), Expect = 0.26
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 34 APPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCA--SGGCGVMG 85
AP P G+PGA RG+ GP G G P P G A SG G G
Sbjct: 1017 APGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETG 1070
Score = 32.7 bits (73), Expect = 0.34
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
Query: 32 GRAPPQSPPPAG----PGAPGAPWRRGDEGP----GPAG--GEAGGPCGAAPGG 75
GR P P P+G PG PG + G +GP GPAG GE G P P G
Sbjct: 881 GRVGP--PGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAG 932
Score = 32.3 bits (72), Expect = 0.44
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 30 RTGRAPPQSPP-PAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMGV 86
+ G A Q PP PAGP RG++GP + G G P A P G +G G GV
Sbjct: 612 KDGEAGAQGPPGPAGPAG-----ERGEQGPAGSPGFQGLPGPAGPPG-EAGKPGEQGV 663
Score = 32.3 bits (72), Expect = 0.44
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 35 PPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAG--GPCGAAPGGCASGGCGVMGVS 87
P +S PGA G+P R G G GE G GP GA A G G G S
Sbjct: 1009 PGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKS 1063
Score = 32.0 bits (71), Expect = 0.58
Identities = 64/245 (26%), Positives = 79/245 (32%), Gaps = 14/245 (5%)
Query: 8 QHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEG-PGPAGGEAG 66
Q P P G + G + AP PG G P RG G PGP G
Sbjct: 688 QGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDR-- 745
Query: 67 GPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRIFLRTAS 126
G G + G GV G++ + + + S A R R
Sbjct: 746 GDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEP 805
Query: 127 SELLPA--IAPDGRRA-GGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPLRPG 183
PA P G G + E A + AGPP P +V P G
Sbjct: 806 GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNV--GAPGAKG 863
Query: 184 AVRKSQPPGLRRQTAGGRARLG----GARAVDPGTGWGHCACSRRRGERRSRRAAGVPGE 239
A + PPG G R+G A PG G +G R AG PGE
Sbjct: 864 ARGSAGPPG-ATGFPGAAGRVGPPGPSGNAGPPGPP-GPAGKEGGKGPRGETGPAGRPGE 921
Query: 240 LGAPG 244
+G PG
Sbjct: 922 VGPPG 926
Score = 32.0 bits (71), Expect = 0.58
Identities = 17/43 (39%), Positives = 18/43 (41%)
Query: 35 PPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCA 77
P Q PG PG G +GP A GE G P P G A
Sbjct: 964 PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLA 1006
Score = 31.6 bits (70), Expect = 0.75
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 23 DGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEG-PGPAG--GEAGGPCGAAPGGCASG 79
DG+ + AP + P PGA G +G G PGP G GE G P G A G
Sbjct: 391 DGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTG-AKG 449
Query: 80 GCGVMGV 86
G +GV
Sbjct: 450 EPGPVGV 456
Score = 31.2 bits (69), Expect = 0.98
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 44 PGAPGAPWRRGDEGPGPAGGEAG--GPCGAAPGGCASGGCGVMG 85
PG PG+P G++GP A G AG GP G+A G G+ G
Sbjct: 1120 PGPPGSP---GEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPG 1160
Score = 30.8 bits (68), Expect = 1.3
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 38 SPPPAGPGAPGAPWRRGDEGPGPAGGEAG--GPCG 70
S P PG PGAP +G +GP GE G GP G
Sbjct: 184 SGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMG 218
Score = 30.8 bits (68), Expect = 1.3
Identities = 25/75 (33%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 4 PEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPA---GPGAPGAPWRRGDEGPGP 60
P Q P P G +GK+ R PP GPG+ G P G GP
Sbjct: 453 PVGVQGPPGPAG------EEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKG 506
Query: 61 AGGEAGGPCGAAPGG 75
GE G P A P G
Sbjct: 507 PAGERGSPGPAGPKG 521
Score = 30.8 bits (68), Expect = 1.3
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 32 GRAPPQSPP-PAGP----GAPGAPWRRGDEGPGPAGGEAGGP 68
G Q PP PAGP GAPG +GD G A G G P
Sbjct: 683 GERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAP 724
Score = 30.4 bits (67), Expect = 1.7
Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 13/56 (23%)
Query: 33 RAPPQSPPPAG-------PGAPGAPWRRGDEG-PGPAGGE----AGGPCG-AAPGG 75
R P P PAG PGA G P +G G PG AG A GP G PGG
Sbjct: 370 RGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGG 425
Score = 30.4 bits (67), Expect = 1.7
Identities = 65/244 (26%), Positives = 78/244 (31%), Gaps = 27/244 (11%)
Query: 36 PQSPPPAG----PGAPGAPWRRGDEG----PGPAGGEAG--GPCGAAPGGCASGGCGVMG 85
P +P P G G G P +RG+ G PGP+ GE G GP GA+ G G G
Sbjct: 946 PGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPS-GEPGKQGPSGASGERGPPGPMGPPG 1004
Query: 86 VSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGLQW 145
++ S + P R + A R E PA P A G
Sbjct: 1005 LAGPPGESGREGAPGAEGSPGRDGSPGAKGDR---------GETGPAGPPGAPGAPGAPG 1055
Query: 146 E-RPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPLRPGAVRKSQPPGLRRQTAGGRARL 204
PA R AGP P V R P P R + + G +
Sbjct: 1056 PVGPAGKSGDR----GETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHR 1111
Query: 205 GGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTRALASTSRAPPRRG-- 262
G + P G G G PG GAPG L P RG
Sbjct: 1112 GFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRT 1171
Query: 263 GDPG 266
GD G
Sbjct: 1172 GDAG 1175
Score = 30.0 bits (66), Expect = 2.2
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 34 APPQSPP---PAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGG 75
AP Q P P G PGAP G G A G AG P P G
Sbjct: 297 APGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAG 341
Score = 29.3 bits (64), Expect = 3.7
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 32 GRAPPQSP-----PPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMGV 86
G A PQ P P G PG P GP A G AG P GA A G G G+
Sbjct: 353 GEAGPQGPRGSEGPQGVRGEPGPP------GPAGAAGPAGNP-GADGQPGAKGANGAPGI 405
Query: 87 S 87
+
Sbjct: 406 A 406
Score = 28.9 bits (63), Expect = 4.9
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 32 GRAPPQSPP-----PAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMG 85
G P PP P PG PG P G GP GG ++GG V G
Sbjct: 121 GPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPG 179
Score = 28.9 bits (63), Expect = 4.9
Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 35 PPQSPPPAGPGAPGAPWRRGDEG-PGPAG--GEAG-----------GPCGAAPGGCASGG 80
P + PP G PG GD G PGP+G GE G GP G A G
Sbjct: 646 PGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGN 705
Query: 81 CGVMG 85
G G
Sbjct: 706 DGAKG 710
Score = 28.5 bits (62), Expect = 6.4
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 30 RTGRAPPQSPP--------PAGPGAPGAPWRRGDEGPGPAGGEAG--GPCGAAPGGCASG 79
+ GR + PP P G PG RG G A G+AG GP G +G
Sbjct: 237 KPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENG 296
Query: 80 GCGVMG 85
G MG
Sbjct: 297 APGQMG 302
Score = 28.1 bits (61), Expect = 8.3
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 32 GRAPPQSPPPAGP-GAPGAPWRRGDEGPGPAGGEAGGPCGAAPGG 75
G + P P+GP G PG P G +G GE G P + P G
Sbjct: 174 GISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMG 218
Score = 28.1 bits (61), Expect = 8.3
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 31 TGRAPPQSP--PPAGPGAPGAPWRRGDEGP-GPAG-----GEAG--GPCG----AAPGGC 76
+G + P P PP GAPG G GP GP G G+AG GP G P G
Sbjct: 1132 SGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGP 1191
Query: 77 ASGG 80
S G
Sbjct: 1192 PSAG 1195
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 44.3 bits (103), Expect = 1e-04
Identities = 34/85 (40%), Positives = 38/85 (44%), Gaps = 17/85 (20%)
Query: 13 PLGAFTLDQRDGKQRLRRTGRAPPQSP--PPAGPGAPGAPWRRGDEGP----GPAG---- 62
P GA DG+ G A P P P GPG PGAP +G+ GP GP G
Sbjct: 337 PAGAAGARGNDGQP-----GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGP 391
Query: 63 -GEAGGPCGAAPGGCASGGCGVMGV 86
GE G P P G ASG G G+
Sbjct: 392 RGEPGTPGSPGPAG-ASGNPGTDGI 415
Score = 39.7 bits (91), Expect = 0.003
Identities = 73/241 (30%), Positives = 81/241 (33%), Gaps = 36/241 (14%)
Query: 39 PPPAGP-GAPGAPWRRGDEG-PGPAGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLS 96
P PAG GA GAP RG+ G PGPAG GP GA A G G G
Sbjct: 809 PGPAGSAGARGAPGERGETGPPGPAG--FAGPPGADGQPGAKGEQGEAGQK--------- 857
Query: 97 WSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRL 156
+ P S A + T A P G A G P AA R
Sbjct: 858 -GDAGAPGPQGPSGAPGPQGPTGV---TGPKGARGAQGPPG--ATGF----PGAAGRVGP 907
Query: 157 PRLSWLPS-AGPPRP----------GLSVRWRRPLRPGAVRKSQPPGLRRQTAGGRARLG 205
P + P GPP P G S R PG + PPG + G G
Sbjct: 908 PGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPG-EKGEPGDDGPSG 966
Query: 206 GARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTRALASTSRAPPRRGGDP 265
P G G+R R G+PG G PG AS R PP G P
Sbjct: 967 AEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPG-ASGDRGPPGPVGPP 1025
Query: 266 G 266
G
Sbjct: 1026 G 1026
Score = 37.0 bits (84), Expect = 0.018
Identities = 67/238 (28%), Positives = 84/238 (35%), Gaps = 28/238 (11%)
Query: 41 PAGP-GAPGAPWRRGDEGPGPAGGEAG--GPCGAAPGGCASGGCGVMGVSLTVSLSFLSW 97
P GP G PG P + GD+G G+AG GP G G G+ GV L
Sbjct: 238 PMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDG 297
Query: 98 SSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGLQWER----PAAALR 153
+ P + S + P G R GL ER PA A
Sbjct: 298 AKGEAGAPGVKG-------------ESGSPGENGSPGPMGPR--GLPGERGRTGPAGAAG 342
Query: 154 TRLPRLSWLPSAGPPRP-GLSVRWRRPLRPGAVRKSQPPGLR--RQTAGGRARLGGARAV 210
R P AGPP P G + P PGA ++ P G R G R G +
Sbjct: 343 ARGNDGQPGP-AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP 401
Query: 211 DPGTGWGHCACSRRRGERRSRRAAGVPGELGAPG--GHCTRALASTSRAPPRRGGDPG 266
P G+ G + S A G+ G G PG G A+ P + G+PG
Sbjct: 402 GPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPG 459
Score = 37.0 bits (84), Expect = 0.018
Identities = 68/268 (25%), Positives = 90/268 (33%), Gaps = 27/268 (10%)
Query: 4 PEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEG-PGPAG 62
P S +P P G +DG + R P ++ P G G P +G+ G GP+G
Sbjct: 907 PPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSG 966
Query: 63 GEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRIFL 122
E GP G P G A G G++G+ P + A A R
Sbjct: 967 AE--GPPG--PQGLA-GQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGP 1021
Query: 123 RTASSELLPAIAPDGRR----AGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRR 178
PA P GR A G AA ++ + + G P P
Sbjct: 1022 VGPPGLTGPAGEP-GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGP-------- 1072
Query: 179 PLRPGAVRKSQPPGLRRQTAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPG 238
PG+ + P G + G R G + P G +G R + AG PG
Sbjct: 1073 ---PGSPGPAGPTGKQ----GDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPG 1125
Query: 239 ELGAPGGHCTRALASTSRAPPRRGGDPG 266
E G G L PP GD G
Sbjct: 1126 ERGLKGHRGFTGLQGLP-GPPGPSGDQG 1152
Score = 35.0 bits (79), Expect = 0.068
Identities = 26/57 (45%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 35 PPQSPPPAGPGAPGAPWRRGDEGP----GPAG--GEAGGPCGAAPGGCASGGCGVMG 85
P + P PGA G R GD GP GP+G GE G P P G A G GVMG
Sbjct: 548 PGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQG-ARGQPGVMG 603
Score = 32.7 bits (73), Expect = 0.34
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 33 RAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGG 75
+ P P PAGP GAP G+EG A GE GG P G
Sbjct: 467 QGPKGEPGPAGP--QGAPGPAGEEGKRGARGEPGGVGPIGPPG 507
Score = 32.3 bits (72), Expect = 0.44
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 30 RTGRAPPQSPP--------PAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGC--ASG 79
+ G+A + PP P PG PG RG G A GEAG P G +G
Sbjct: 259 KPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENG 318
Query: 80 GCGVMG 85
G MG
Sbjct: 319 SPGPMG 324
Score = 31.6 bits (70), Expect = 0.75
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 29 RRTGRAPPQSPPPAGP-GAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCA 77
+R R P P GP G GAP RG G G G P P G A
Sbjct: 490 KRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLA 539
Score = 31.2 bits (69), Expect = 0.98
Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 36 PQSPP-PAGP-GAPGAPWRRGDEG----PGPAG--GEAGGPCGAAPGG 75
P+ PP P GP G G RGD+G PGP G GE G P P G
Sbjct: 118 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPG 165
Score = 31.2 bits (69), Expect = 0.98
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 32 GRAPPQSPPPAG--PGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGG 75
G A PP + PG PG P G +GP A G++G P A G
Sbjct: 900 GAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPG 945
Score = 30.8 bits (68), Expect = 1.3
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 33 RAPPQSPPPAG----PGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGG 75
R +P P+G PG PG P G G GEAG P P G
Sbjct: 653 RGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRG 699
Score = 30.4 bits (67), Expect = 1.7
Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 3 LPEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAG 62
LP H +P G G ++ +P ++ P G G P RG GP A
Sbjct: 283 LPGVKGHRGYP-GLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAA 341
Query: 63 GEAG-----GPCGAAPGGCASGGCGVMG 85
G G GP G +GG G G
Sbjct: 342 GARGNDGQPGPAGPPGPVGPAGGPGFPG 369
Score = 30.4 bits (67), Expect = 1.7
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 36 PQSPPPAG----PGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMG 85
P SP PAG PG G P +G G G G P P G G G +G
Sbjct: 398 PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG-PQGATGPLG 450
Score = 30.4 bits (67), Expect = 1.7
Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 26/101 (25%)
Query: 11 PFPLGAFTLDQRDGKQRLRRTGRAP----------PQSPP-------PAGP----GAPGA 49
P P GA DG + + AP P+ PP P GP G PG
Sbjct: 401 PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGI 460
Query: 50 PWRRGDEG----PGPAGGE-AGGPCGAAPGGCASGGCGVMG 85
+G++G PGPAG + A GP G A G G +G
Sbjct: 461 AGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVG 501
Score = 30.4 bits (67), Expect = 1.7
Identities = 65/254 (25%), Positives = 78/254 (30%), Gaps = 65/254 (25%)
Query: 33 RAPPQSPPPAGP-GAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMGVSLTVS 91
R P + GP G PG P G +GP A G AG P P G
Sbjct: 707 RGSPGAQGLQGPRGLPGTP---GTDGPKGASGPAGPPGAQGPPGLQG------------- 750
Query: 92 LSFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAP--DGRR--AGGLQWER 147
+P AA + R E P AP DG R G +
Sbjct: 751 ------------MPGERGAAGIAGPKGD---RGDVGEKGPEGAPGKDGGRGLTGPIGPPG 795
Query: 148 PAAALRTRLPRLSWLPSAGPPRPGLSVRWR-------RPLRPGAVRKSQPPGLRRQ---- 196
PA A + GPP P S R PG + PPG Q
Sbjct: 796 PAGANGEK-------GEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAK 848
Query: 197 ----TAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTRALA 252
AG + G P G + G + +R A G PG G PG A
Sbjct: 849 GEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG-------A 901
Query: 253 STSRAPPRRGGDPG 266
+ PP G+PG
Sbjct: 902 AGRVGPPGSNGNPG 915
Score = 30.4 bits (67), Expect = 1.7
Identities = 67/250 (26%), Positives = 82/250 (32%), Gaps = 36/250 (14%)
Query: 32 GRAPPQSPPPAG--PGAPGAPWRRGDEG-PGPAG--GEAG--GPCGAAPGGCASGGCGVM 84
G + P PP A PG G P RG G GP G G+ G GP G APG GG G+
Sbjct: 732 GASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG-APG--KDGGRGLT 788
Query: 85 GVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGLQ 144
G + + P + +A A R A E P G
Sbjct: 789 GPIGPPGPAGANGEKGEVGPPGPAGSAGA---------RGAPGERGETGPPGPAGFAGPP 839
Query: 145 WERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPLRP-------GAVRKSQPPGLRR-Q 196
+ AG P P P P GA PPG
Sbjct: 840 GADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP 899
Query: 197 TAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTRALASTSR 256
A GR G+ +PG G S + G + +R +G PG G PG
Sbjct: 900 GAAGRVGPPGSNG-NPGPP-GPPGPSGKDGPKGARGDSGPPGRAGEPG-------LQGPA 950
Query: 257 APPRRGGDPG 266
PP G+PG
Sbjct: 951 GPPGEKGEPG 960
Score = 29.6 bits (65), Expect = 2.9
Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 41 PAGPGAPGAPWRRGDEGPGPAGGE-----AGG---PCGAAPGGCASGGCGVMG 85
P PG PG P G GP GG AGG G A G G G MG
Sbjct: 155 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMG 207
Score = 29.6 bits (65), Expect = 2.9
Identities = 69/256 (26%), Positives = 80/256 (31%), Gaps = 51/256 (19%)
Query: 39 PPPAGP-GAPGAPWRRGDEGPGPAGGEAGGPCGAAPGG-----CASGGCGVMGVSLTVSL 92
P AG G PGAP RG G G AG P A P G A G G G+
Sbjct: 614 PGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGP 673
Query: 93 SFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRR----------AGG 142
VP + A + P G R A G
Sbjct: 674 PGEGGKPGDQGVPGEAGAPG-------------------LVGPRGERGFPGERGSPGAQG 714
Query: 143 LQWERPAAAL-RTRLPRLSWLPSAGPP----RPGLSVRWRRPLRPGAVRKSQPPGLR--- 194
LQ R T P+ + P AGPP PGL P GA + P G R
Sbjct: 715 LQGPRGLPGTPGTDGPKGASGP-AGPPGAQGPPGLQ---GMPGERGAAGIAGPKGDRGDV 770
Query: 195 --RQTAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPG--GHCTRA 250
+ G + GG P G + +GE AG G GAPG G
Sbjct: 771 GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP 830
Query: 251 LASTSRAPPRRGGDPG 266
+ PP G PG
Sbjct: 831 GPAGFAGPPGADGQPG 846
Score = 29.3 bits (64), Expect = 3.7
Identities = 30/85 (35%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 4 PEPSQHHPFPLGAFTLDQRDGKQRLR-RTGRAPPQSPPP--AGPGAPGAPWRRGDEGPGP 60
P Q P P G +GK+ R G P PP PG G P + G GP
Sbjct: 475 PAGPQGAPGPAG------EEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKG 528
Query: 61 AGGEAGGPCGAAPGGCASGGCGVMG 85
A GE GP G A A+G G G
Sbjct: 529 APGER-GPSGLAGPKGANGDPGRPG 552
Score = 28.5 bits (62), Expect = 6.4
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
Query: 33 RAPPQSPPPAG-PGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMGVS 87
R P + P G PG PG+ PGPAG PG A G G G++
Sbjct: 383 RGPEGAQGPRGEPGTPGS--------PGPAGASGNPGTDGIPG--AKGSAGAPGIA 428
Score = 28.5 bits (62), Expect = 6.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 45 GAPGAPWRRGDEG-PGPAG--GEAGGPCGAAPGGCASGGCGVMG 85
G PG P GD+G GPAG G G P P G G G+ G
Sbjct: 1140 GLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSG-KDGANGIPG 1182
Score = 28.5 bits (62), Expect = 6.4
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 32 GRAPPQSPP-PAGP-------------GAPGAPWRRGDEGPGPAGGEAGGPCGAAPGG 75
G + P+ PP P GP G PG R G+ GP G G P P G
Sbjct: 1158 GPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPG 1215
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 44.3 bits (103), Expect = 1e-04
Identities = 34/85 (40%), Positives = 38/85 (44%), Gaps = 17/85 (20%)
Query: 13 PLGAFTLDQRDGKQRLRRTGRAPPQSP--PPAGPGAPGAPWRRGDEGP----GPAG---- 62
P GA DG+ G A P P P GPG PGAP +G+ GP GP G
Sbjct: 268 PAGAAGARGNDGQP-----GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGP 322
Query: 63 -GEAGGPCGAAPGGCASGGCGVMGV 86
GE G P P G ASG G G+
Sbjct: 323 RGEPGTPGSPGPAG-ASGNPGTDGI 346
Score = 39.7 bits (91), Expect = 0.003
Identities = 73/241 (30%), Positives = 81/241 (33%), Gaps = 36/241 (14%)
Query: 39 PPPAGP-GAPGAPWRRGDEG-PGPAGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLS 96
P PAG GA GAP RG+ G PGPAG GP GA A G G G
Sbjct: 740 PGPAGSAGARGAPGERGETGPPGPAG--FAGPPGADGQPGAKGEQGEAGQK--------- 788
Query: 97 WSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRL 156
+ P S A + T A P G A G P AA R
Sbjct: 789 -GDAGAPGPQGPSGAPGPQGPTGV---TGPKGARGAQGPPG--ATGF----PGAAGRVGP 838
Query: 157 PRLSWLPS-AGPPRP----------GLSVRWRRPLRPGAVRKSQPPGLRRQTAGGRARLG 205
P + P GPP P G S R PG + PPG + G G
Sbjct: 839 PGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPG-EKGEPGDDGPSG 897
Query: 206 GARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTRALASTSRAPPRRGGDP 265
P G G+R R G+PG G PG AS R PP G P
Sbjct: 898 AEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPG-ASGDRGPPGPVGPP 956
Query: 266 G 266
G
Sbjct: 957 G 957
Score = 37.0 bits (84), Expect = 0.018
Identities = 67/238 (28%), Positives = 84/238 (35%), Gaps = 28/238 (11%)
Query: 41 PAGP-GAPGAPWRRGDEGPGPAGGEAG--GPCGAAPGGCASGGCGVMGVSLTVSLSFLSW 97
P GP G PG P + GD+G G+AG GP G G G+ GV L
Sbjct: 169 PMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDG 228
Query: 98 SSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGLQWER----PAAALR 153
+ P + S + P G R GL ER PA A
Sbjct: 229 AKGEAGAPGVKG-------------ESGSPGENGSPGPMGPR--GLPGERGRTGPAGAAG 273
Query: 154 TRLPRLSWLPSAGPPRP-GLSVRWRRPLRPGAVRKSQPPGLR--RQTAGGRARLGGARAV 210
R P AGPP P G + P PGA ++ P G R G R G +
Sbjct: 274 ARGNDGQPGP-AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP 332
Query: 211 DPGTGWGHCACSRRRGERRSRRAAGVPGELGAPG--GHCTRALASTSRAPPRRGGDPG 266
P G+ G + S A G+ G G PG G A+ P + G+PG
Sbjct: 333 GPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPG 390
Score = 37.0 bits (84), Expect = 0.018
Identities = 68/268 (25%), Positives = 90/268 (33%), Gaps = 27/268 (10%)
Query: 4 PEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEG-PGPAG 62
P S +P P G +DG + R P ++ P G G P +G+ G GP+G
Sbjct: 838 PPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSG 897
Query: 63 GEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRIFL 122
E GP G P G A G G++G+ P + A A R
Sbjct: 898 AE--GPPG--PQGLA-GQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGP 952
Query: 123 RTASSELLPAIAPDGRR----AGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRR 178
PA P GR A G AA ++ + + G P P
Sbjct: 953 VGPPGLTGPAGEP-GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGP-------- 1003
Query: 179 PLRPGAVRKSQPPGLRRQTAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPG 238
PG+ + P G + G R G + P G +G R + AG PG
Sbjct: 1004 ---PGSPGPAGPTGKQ----GDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPG 1056
Query: 239 ELGAPGGHCTRALASTSRAPPRRGGDPG 266
E G G L PP GD G
Sbjct: 1057 ERGLKGHRGFTGLQGLP-GPPGPSGDQG 1083
Score = 35.0 bits (79), Expect = 0.068
Identities = 26/57 (45%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 35 PPQSPPPAGPGAPGAPWRRGDEGP----GPAG--GEAGGPCGAAPGGCASGGCGVMG 85
P + P PGA G R GD GP GP+G GE G P P G A G GVMG
Sbjct: 479 PGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQG-ARGQPGVMG 534
Score = 32.7 bits (73), Expect = 0.34
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 33 RAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGG 75
+ P P PAGP GAP G+EG A GE GG P G
Sbjct: 398 QGPKGEPGPAGP--QGAPGPAGEEGKRGARGEPGGVGPIGPPG 438
Score = 32.3 bits (72), Expect = 0.44
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 30 RTGRAPPQSPP--------PAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGC--ASG 79
+ G+A + PP P PG PG RG G A GEAG P G +G
Sbjct: 190 KPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENG 249
Query: 80 GCGVMG 85
G MG
Sbjct: 250 SPGPMG 255
Score = 31.6 bits (70), Expect = 0.75
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 29 RRTGRAPPQSPPPAGP-GAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCA 77
+R R P P GP G GAP RG G G G P P G A
Sbjct: 421 KRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLA 470
Score = 31.2 bits (69), Expect = 0.98
Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 36 PQSPP-PAGP-GAPGAPWRRGDEG----PGPAG--GEAGGPCGAAPGG 75
P+ PP P GP G G RGD+G PGP G GE G P P G
Sbjct: 49 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPG 96
Score = 31.2 bits (69), Expect = 0.98
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 32 GRAPPQSPPPAG--PGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGG 75
G A PP + PG PG P G +GP A G++G P A G
Sbjct: 831 GAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPG 876
Score = 30.8 bits (68), Expect = 1.3
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 33 RAPPQSPPPAG----PGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGG 75
R +P P+G PG PG P G G GEAG P P G
Sbjct: 584 RGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRG 630
Score = 30.4 bits (67), Expect = 1.7
Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 3 LPEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAG 62
LP H +P G G ++ +P ++ P G G P RG GP A
Sbjct: 214 LPGVKGHRGYP-GLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAA 272
Query: 63 GEAG-----GPCGAAPGGCASGGCGVMG 85
G G GP G +GG G G
Sbjct: 273 GARGNDGQPGPAGPPGPVGPAGGPGFPG 300
Score = 30.4 bits (67), Expect = 1.7
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 36 PQSPPPAG----PGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMG 85
P SP PAG PG G P +G G G G P P G G G +G
Sbjct: 329 PGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG-PQGATGPLG 381
Score = 30.4 bits (67), Expect = 1.7
Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 26/101 (25%)
Query: 11 PFPLGAFTLDQRDGKQRLRRTGRAP----------PQSPP-------PAGP----GAPGA 49
P P GA DG + + AP P+ PP P GP G PG
Sbjct: 332 PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGI 391
Query: 50 PWRRGDEG----PGPAGGE-AGGPCGAAPGGCASGGCGVMG 85
+G++G PGPAG + A GP G A G G +G
Sbjct: 392 AGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVG 432
Score = 30.4 bits (67), Expect = 1.7
Identities = 65/254 (25%), Positives = 78/254 (30%), Gaps = 65/254 (25%)
Query: 33 RAPPQSPPPAGP-GAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMGVSLTVS 91
R P + GP G PG P G +GP A G AG P P G
Sbjct: 638 RGSPGAQGLQGPRGLPGTP---GTDGPKGASGPAGPPGAQGPPGLQG------------- 681
Query: 92 LSFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAP--DGRR--AGGLQWER 147
+P AA + R E P AP DG R G +
Sbjct: 682 ------------MPGERGAAGIAGPKGD---RGDVGEKGPEGAPGKDGGRGLTGPIGPPG 726
Query: 148 PAAALRTRLPRLSWLPSAGPPRPGLSVRWR-------RPLRPGAVRKSQPPGLRRQ---- 196
PA A + GPP P S R PG + PPG Q
Sbjct: 727 PAGANGEK-------GEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAK 779
Query: 197 ----TAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTRALA 252
AG + G P G + G + +R A G PG G PG A
Sbjct: 780 GEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG-------A 832
Query: 253 STSRAPPRRGGDPG 266
+ PP G+PG
Sbjct: 833 AGRVGPPGSNGNPG 846
Score = 30.4 bits (67), Expect = 1.7
Identities = 67/250 (26%), Positives = 82/250 (32%), Gaps = 36/250 (14%)
Query: 32 GRAPPQSPPPAG--PGAPGAPWRRGDEG-PGPAG--GEAG--GPCGAAPGGCASGGCGVM 84
G + P PP A PG G P RG G GP G G+ G GP G APG GG G+
Sbjct: 663 GASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG-APG--KDGGRGLT 719
Query: 85 GVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGLQ 144
G + + P + +A A R A E P G
Sbjct: 720 GPIGPPGPAGANGEKGEVGPPGPAGSAGA---------RGAPGERGETGPPGPAGFAGPP 770
Query: 145 WERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPLRP-------GAVRKSQPPGLRR-Q 196
+ AG P P P P GA PPG
Sbjct: 771 GADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP 830
Query: 197 TAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTRALASTSR 256
A GR G+ +PG G S + G + +R +G PG G PG
Sbjct: 831 GAAGRVGPPGSNG-NPGPP-GPPGPSGKDGPKGARGDSGPPGRAGEPG-------LQGPA 881
Query: 257 APPRRGGDPG 266
PP G+PG
Sbjct: 882 GPPGEKGEPG 891
Score = 29.6 bits (65), Expect = 2.9
Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 41 PAGPGAPGAPWRRGDEGPGPAGGE-----AGG---PCGAAPGGCASGGCGVMG 85
P PG PG P G GP GG AGG G A G G G MG
Sbjct: 86 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMG 138
Score = 29.6 bits (65), Expect = 2.9
Identities = 69/256 (26%), Positives = 80/256 (31%), Gaps = 51/256 (19%)
Query: 39 PPPAGP-GAPGAPWRRGDEGPGPAGGEAGGPCGAAPGG-----CASGGCGVMGVSLTVSL 92
P AG G PGAP RG G G AG P A P G A G G G+
Sbjct: 545 PGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGP 604
Query: 93 SFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRR----------AGG 142
VP + A + P G R A G
Sbjct: 605 PGEGGKPGDQGVPGEAGAPG-------------------LVGPRGERGFPGERGSPGAQG 645
Query: 143 LQWERPAAAL-RTRLPRLSWLPSAGPP----RPGLSVRWRRPLRPGAVRKSQPPGLR--- 194
LQ R T P+ + P AGPP PGL P GA + P G R
Sbjct: 646 LQGPRGLPGTPGTDGPKGASGP-AGPPGAQGPPGLQ---GMPGERGAAGIAGPKGDRGDV 701
Query: 195 --RQTAGGRARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPG--GHCTRA 250
+ G + GG P G + +GE AG G GAPG G
Sbjct: 702 GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP 761
Query: 251 LASTSRAPPRRGGDPG 266
+ PP G PG
Sbjct: 762 GPAGFAGPPGADGQPG 777
Score = 29.3 bits (64), Expect = 3.7
Identities = 30/85 (35%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 4 PEPSQHHPFPLGAFTLDQRDGKQRLR-RTGRAPPQSPPP--AGPGAPGAPWRRGDEGPGP 60
P Q P P G +GK+ R G P PP PG G P + G GP
Sbjct: 406 PAGPQGAPGPAG------EEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKG 459
Query: 61 AGGEAGGPCGAAPGGCASGGCGVMG 85
A GE GP G A A+G G G
Sbjct: 460 APGER-GPSGLAGPKGANGDPGRPG 483
Score = 28.5 bits (62), Expect = 6.4
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
Query: 33 RAPPQSPPPAG-PGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMGVS 87
R P + P G PG PG+ PGPAG PG A G G G++
Sbjct: 314 RGPEGAQGPRGEPGTPGS--------PGPAGASGNPGTDGIPG--AKGSAGAPGIA 359
Score = 28.5 bits (62), Expect = 6.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 45 GAPGAPWRRGDEG-PGPAG--GEAGGPCGAAPGGCASGGCGVMG 85
G PG P GD+G GPAG G G P P G G G+ G
Sbjct: 1071 GLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSG-KDGANGIPG 1113
Score = 28.5 bits (62), Expect = 6.4
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 32 GRAPPQSPP-PAGP-------------GAPGAPWRRGDEGPGPAGGEAGGPCGAAPGG 75
G + P+ PP P GP G PG R G+ GP G G P P G
Sbjct: 1089 GPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPG 1146
>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
Length = 577
Score = 44.3 bits (103), Expect = 1e-04
Identities = 72/235 (30%), Positives = 93/235 (39%), Gaps = 46/235 (19%)
Query: 7 SQHHPFP----LGAFTLDQRDGKQRLRRT----GRAPPQSPPPAGPGAPGAPWRRGDEGP 58
+Q HP P L F D R R++ G+ SPPPA GAP P +R + GP
Sbjct: 333 AQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQRQNFGP 392
Query: 59 GPAG--GEAGGPCGAAPGGCASGGCG----VMGVSLTV--SLSFLSWSSSRCRVPARSSA 110
G AG GP GA GGC G G V G L + + S SW +SR AR
Sbjct: 393 GCAGLSPRPEGPHGA--GGCPMGELGMSLRVWGTLLPLERARSLPSW-NSRGFCGARRGG 449
Query: 111 AS----------ACSCRLRIFLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLS 160
S +LR+ A + ++AP + G R AA R P+ S
Sbjct: 450 GSGRFLPGGGWRGARTKLRVCCTPAPGQSRGSLAPRPTGSAG----RALAAARLFAPQRS 505
Query: 161 --WLPS-AGPPRPGLSVRWRRPLRPGAVRKSQPPGLRRQTAGGRARLGGARAVDP 212
LP+ G +R R L GA +TAG R++ G A P
Sbjct: 506 AAQLPARCGCFGSARGMRAPRRLLVGA----------EETAGARSKRGKVLAHSP 550
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 44.3 bits (103), Expect = 1e-04
Identities = 31/68 (45%), Positives = 32/68 (47%), Gaps = 19/68 (27%)
Query: 31 TGRAPPQSPPPAG-------------PGAPGAPWRRGDE--GPGPAGGEAGGPCGAAPGG 75
TG PP PPPAG PG PGA R G G GP GG AGGP PGG
Sbjct: 6 TGGPPPGPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPGGGSAGGP-SQPPGG 64
Query: 76 CASGGCGV 83
GG G+
Sbjct: 65 ---GGPGI 69
Score = 30.0 bits (66), Expect = 2.2
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 37 QSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVM 84
+S PP PG PG P G G G G G P G + CG++
Sbjct: 394 RSGPPGPPGGPGMP--PGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLV 439
Score = 28.5 bits (62), Expect = 6.4
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 36 PQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAP--GGCASGGCGVMGVSLTVSLS 93
P P GPG PG G PGP GP GA P GG G T
Sbjct: 498 PLCPVGPGPGGPGPAGPMGPFNPGPFN---QGPPGAPPHAGGPPPHQYPPQGWGNT---- 550
Query: 94 FLSWSSSRCRVPARSSAASA 113
+ W P++++AA+A
Sbjct: 551 YPQWQPPAPHDPSKAAAAAA 570
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 43.1 bits (100), Expect = 2e-04
Identities = 37/114 (32%), Positives = 44/114 (38%), Gaps = 12/114 (10%)
Query: 38 SPPPAGPGAPGAPWRRGDEGPGPAG-------GEAGGPCGAAPGG-CASGGCGVMGVSLT 89
+PPP GA GA G GPG AG G AGG G PGG A CGV+ +L
Sbjct: 139 TPPPLAGGAGGAGGAGGGPGPGQAGWLEGGRTGGAGGRGGEGPGGSTAYVVCGVISFALA 198
Query: 90 VSLSFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGL 143
V + S R P + + I A P PD R+ L
Sbjct: 199 VGVGAKVAFSKASRAPRAHRDINVPRALVDILRHQAG----PGTRPDRARSSSL 248
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 42.7 bits (99), Expect = 3e-04
Identities = 71/230 (30%), Positives = 87/230 (37%), Gaps = 56/230 (24%)
Query: 57 GPGPAGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVP-ARSSAASACS 115
GPGP G GC + CG + ++S +F + SS CR+ +R S +
Sbjct: 5 GPGPGGSYP------ITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGT 58
Query: 116 CRLRIFLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLSWLP---------SAG 166
A +E+ A PD R RPAA R PR P SA
Sbjct: 59 FSPE---SAAGTEVSGAPHPDSR-------TRPAA--RPPHPRTRSPPGRSGSGTTFSAV 106
Query: 167 PPRPG--LSVRWRRPLRPG------AVRKSQPPGLRR---QTAGGRARLGGARAVDPGTG 215
PPRP S RP PG + R S P + +TA GRA GG+ G G
Sbjct: 107 PPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQG 166
Query: 216 WGHCACSRRRGERRSRRAAGVPGELGAPGGHCTRALASTSRAPPRRGGDP 265
S + G R S RA G P P C R RA PRR P
Sbjct: 167 ------SDQVGARPS-RAGGQP-----PPLTCRRC-----RAAPRRSARP 199
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 42.7 bits (99), Expect = 3e-04
Identities = 71/230 (30%), Positives = 87/230 (37%), Gaps = 56/230 (24%)
Query: 57 GPGPAGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVP-ARSSAASACS 115
GPGP G GC + CG + ++S +F + SS CR+ +R S +
Sbjct: 5 GPGPGGSYP------ITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGT 58
Query: 116 CRLRIFLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLSWLP---------SAG 166
A +E+ A PD R RPAA R PR P SA
Sbjct: 59 FSPE---SAAGTEVSGAPHPDSR-------TRPAA--RPPHPRTRSPPGRSGSGTTFSAV 106
Query: 167 PPRPG--LSVRWRRPLRPG------AVRKSQPPGLRR---QTAGGRARLGGARAVDPGTG 215
PPRP S RP PG + R S P + +TA GRA GG+ G G
Sbjct: 107 PPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQG 166
Query: 216 WGHCACSRRRGERRSRRAAGVPGELGAPGGHCTRALASTSRAPPRRGGDP 265
S + G R S RA G P P C R RA PRR P
Sbjct: 167 ------SDQVGARPS-RAGGQP-----PPLTCRRC-----RAAPRRSARP 199
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 42.7 bits (99), Expect = 3e-04
Identities = 71/230 (30%), Positives = 87/230 (37%), Gaps = 56/230 (24%)
Query: 57 GPGPAGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVP-ARSSAASACS 115
GPGP G GC + CG + ++S +F + SS CR+ +R S +
Sbjct: 5 GPGPGGSYP------ITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGT 58
Query: 116 CRLRIFLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLSWLP---------SAG 166
A +E+ A PD R RPAA R PR P SA
Sbjct: 59 FSPE---SAAGTEVSGAPHPDSR-------TRPAA--RPPHPRTRSPPGRSGSGTTFSAV 106
Query: 167 PPRPG--LSVRWRRPLRPG------AVRKSQPPGLRR---QTAGGRARLGGARAVDPGTG 215
PPRP S RP PG + R S P + +TA GRA GG+ G G
Sbjct: 107 PPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQG 166
Query: 216 WGHCACSRRRGERRSRRAAGVPGELGAPGGHCTRALASTSRAPPRRGGDP 265
S + G R S RA G P P C R RA PRR P
Sbjct: 167 ------SDQVGARPS-RAGGQP-----PPLTCRRC-----RAAPRRSARP 199
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 42.7 bits (99), Expect = 3e-04
Identities = 71/230 (30%), Positives = 87/230 (37%), Gaps = 56/230 (24%)
Query: 57 GPGPAGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVP-ARSSAASACS 115
GPGP G GC + CG + ++S +F + SS CR+ +R S +
Sbjct: 5 GPGPGGSYP------ITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSRKSRLERGT 58
Query: 116 CRLRIFLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLSWLP---------SAG 166
A +E+ A PD R RPAA R PR P SA
Sbjct: 59 FSPE---SAAGTEVSGAPHPDSR-------TRPAA--RPPHPRTRSPPGRSGSGTTFSAV 106
Query: 167 PPRPG--LSVRWRRPLRPG------AVRKSQPPGLRR---QTAGGRARLGGARAVDPGTG 215
PPRP S RP PG + R S P + +TA GRA GG+ G G
Sbjct: 107 PPRPSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQG 166
Query: 216 WGHCACSRRRGERRSRRAAGVPGELGAPGGHCTRALASTSRAPPRRGGDP 265
S + G R S RA G P P C R RA PRR P
Sbjct: 167 ------SDQVGARPS-RAGGQP-----PPLTCRRC-----RAAPRRSARP 199
>gi|239755333 PREDICTED: hypothetical protein [Homo sapiens]
Length = 267
Score = 41.2 bits (95), Expect = 0.001
Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 37 QSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGG-CGVMGVSLTVSLSFL 95
Q P+G APGAP G E GG G G A G A GG + G ++LS
Sbjct: 151 QGQLPSGFAAPGAPAWSGSEDTA-TGGCPRGEAGTALAGLAMGGTASLTGRGCWINLSHA 209
Query: 96 SWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGLQW 145
+ S+ PA +CS R R + A S P + G + G W
Sbjct: 210 APYSAPAHPPA---GTRSCSPRKRPVAKAAPSAAEPRASAAGTESRGTGW 256
>gi|56606142 complement component 1, q subcomponent-like 4 [Homo
sapiens]
Length = 238
Score = 41.2 bits (95), Expect = 0.001
Identities = 25/57 (43%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 6 PSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAG 62
P+ PFP GA R GK LR P PP PG PG P G GPGP G
Sbjct: 46 PASVPPFPPGAKGEVGRRGKAGLRGPPGPPGPRGPPGEPGRPGPP---GPPGPGPGG 99
Score = 36.6 bits (83), Expect = 0.023
Identities = 24/54 (44%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 36 PQSPPPAGPGAPGAPWRRGDEG-------PGPAG--GEAGGPCGAAPGGCASGG 80
P S PP PGA G RRG G PGP G GE G P P G GG
Sbjct: 46 PASVPPFPPGAKGEVGRRGKAGLRGPPGPPGPRGPPGEPGRPGPPGPPGPGPGG 99
Score = 32.3 bits (72), Expect = 0.44
Identities = 26/65 (40%), Positives = 27/65 (41%), Gaps = 23/65 (35%)
Query: 36 PQSPPPAG---------PGAPGAPWRRGDEG----PGPAG-----GEAG-----GPCGAA 72
P+ P P G PGA G RRG G PGP G GE G GP G
Sbjct: 37 PRGPGPDGAPASVPPFPPGAKGEVGRRGKAGLRGPPGPPGPRGPPGEPGRPGPPGPPGPG 96
Query: 73 PGGCA 77
PGG A
Sbjct: 97 PGGVA 101
>gi|239753883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 40.8 bits (94), Expect = 0.001
Identities = 51/155 (32%), Positives = 59/155 (38%), Gaps = 30/155 (19%)
Query: 137 GRRAGGLQWERPAAAL------------------RTRLPRLSWLPSA-GPPRPGLSVRWR 177
GR+AG L RP +A R R L W +A GP RP R R
Sbjct: 73 GRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARP----RLR 128
Query: 178 RPLR--PGAVRKSQPPGLRRQTAG-GRAR--LGGARAVDPGTG-WGHCACSRRRGERRSR 231
RP PG R+ PG R G GR R GA ++D G + R RR R
Sbjct: 129 RPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPR 188
Query: 232 R-AAGVPGELGAPGGHCTRALASTSRAPPRRGGDP 265
G+P PGG A TS A RG P
Sbjct: 189 GFRPGLPVPTAPPGGLAAAAKDETSCAARERGASP 223
>gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo
sapiens]
Length = 296
Score = 40.8 bits (94), Expect = 0.001
Identities = 51/155 (32%), Positives = 59/155 (38%), Gaps = 30/155 (19%)
Query: 137 GRRAGGLQWERPAAAL------------------RTRLPRLSWLPSA-GPPRPGLSVRWR 177
GR+AG L RP +A R R L W +A GP RP R R
Sbjct: 73 GRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARP----RLR 128
Query: 178 RPLR--PGAVRKSQPPGLRRQTAG-GRAR--LGGARAVDPGTG-WGHCACSRRRGERRSR 231
RP PG R+ PG R G GR R GA ++D G + R RR R
Sbjct: 129 RPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPR 188
Query: 232 R-AAGVPGELGAPGGHCTRALASTSRAPPRRGGDP 265
G+P PGG A TS A RG P
Sbjct: 189 GFRPGLPVPTAPPGGLAAAAKDETSCAARERGASP 223
>gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 40.8 bits (94), Expect = 0.001
Identities = 73/241 (30%), Positives = 87/241 (36%), Gaps = 42/241 (17%)
Query: 36 PQSPPPAGPGAPGAPWRRGDEGPGPA-------GGEAGGPCGAAPGGCASGGCGVMGVSL 88
P S AGPG R G + GP G GGP G A GG + G G G
Sbjct: 583 PASLALAGPGIA----RLGCDLDGPRALVEGLHGRHEGGPLGGAGGGGSGEGQG-RGPGS 637
Query: 89 TVSLSFLSWSSSRCRV-----PARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGL 143
VS+ S + S CR P +SA SA S T+ + L ++ DG A L
Sbjct: 638 RVSVRRSSRAPSSCRAASLAPPRPASATSAGS-------PTSPAPPLHMVSTDGCSAAFL 690
Query: 144 QWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPLRPGAVRKSQPPGLRRQTAGGRAR 203
+ R R G PR WR R VR + P G + + RAR
Sbjct: 691 VLDSARKGDRRSARR-------GGPR-----SWRPSARASWVRSTTPRG--PEASSPRAR 736
Query: 204 LGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTRA---LASTSRAPPR 260
G G A S R AG P E PG RA L +S AP R
Sbjct: 737 -GSFLPKSGGGSPPRPARSLAGPSRDDEPLAGAPEEWPPPGLSSRRAPRFLIKSSPAPGR 795
Query: 261 R 261
R
Sbjct: 796 R 796
>gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo
sapiens]
Length = 296
Score = 40.8 bits (94), Expect = 0.001
Identities = 51/155 (32%), Positives = 59/155 (38%), Gaps = 30/155 (19%)
Query: 137 GRRAGGLQWERPAAAL------------------RTRLPRLSWLPSA-GPPRPGLSVRWR 177
GR+AG L RP +A R R L W +A GP RP R R
Sbjct: 73 GRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARP----RLR 128
Query: 178 RPLR--PGAVRKSQPPGLRRQTAG-GRAR--LGGARAVDPGTG-WGHCACSRRRGERRSR 231
RP PG R+ PG R G GR R GA ++D G + R RR R
Sbjct: 129 RPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPR 188
Query: 232 R-AAGVPGELGAPGGHCTRALASTSRAPPRRGGDP 265
G+P PGG A TS A RG P
Sbjct: 189 GFRPGLPVPTAPPGGLAAAAKDETSCAARERGASP 223
>gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 40.8 bits (94), Expect = 0.001
Identities = 73/241 (30%), Positives = 87/241 (36%), Gaps = 42/241 (17%)
Query: 36 PQSPPPAGPGAPGAPWRRGDEGPGPA-------GGEAGGPCGAAPGGCASGGCGVMGVSL 88
P S AGPG R G + GP G GGP G A GG + G G G
Sbjct: 583 PASLALAGPGIA----RLGCDLDGPRALVEGLHGRHEGGPLGGAGGGGSGEGQG-RGPGS 637
Query: 89 TVSLSFLSWSSSRCRV-----PARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGL 143
VS+ S + S CR P +SA SA S T+ + L ++ DG A L
Sbjct: 638 RVSVRRSSRAPSSCRAASLAPPRPASATSAGS-------PTSPAPPLHMVSTDGCSAAFL 690
Query: 144 QWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPLRPGAVRKSQPPGLRRQTAGGRAR 203
+ R R G PR WR R VR + P G + + RAR
Sbjct: 691 VLDSARKGDRRSARR-------GGPR-----SWRPSARASWVRSTTPRG--PEASSPRAR 736
Query: 204 LGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTRA---LASTSRAPPR 260
G G A S R AG P E PG RA L +S AP R
Sbjct: 737 -GSFLPKSGGGSPPRPARSLAGPSRDDEPLAGAPEEWPPPGLSSRRAPRFLIKSSPAPGR 795
Query: 261 R 261
R
Sbjct: 796 R 796
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 40.8 bits (94), Expect = 0.001
Identities = 42/126 (33%), Positives = 50/126 (39%), Gaps = 22/126 (17%)
Query: 142 GLQWERPAAALRTRLPRLSWLPSA-GPPRPGLSVRWRRPLRPGAVRKSQPPGLRRQTAGG 200
G Q ER A+ R PRL P G P G RP + +++ PGL A
Sbjct: 1311 GEQRERSASPQRAARPRLEEAPGGQGRPEAG---------RPAS--EARAPGLAAADAAD 1359
Query: 201 RARLGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTRALASTSRAPPR 260
AR GG A G C RR G + AG PGG + AL + RA R
Sbjct: 1360 AARAGGKEAPRAAAGSELC---RREGPGAAPAFAG-------PGGGGSGALEAEGRAGAR 1409
Query: 261 RGGDPG 266
G PG
Sbjct: 1410 AGPRPG 1415
Score = 28.5 bits (62), Expect = 6.4
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 24 GKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGG 80
G + RR G P +P AGPG G G A G AG G PG GG
Sbjct: 1374 GSELCRREG--PGAAPAFAGPGG-------GGSGALEAEGRAGARAGPRPGPRPPGG 1421
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 40.8 bits (94), Expect = 0.001
Identities = 64/251 (25%), Positives = 87/251 (34%), Gaps = 43/251 (17%)
Query: 3 LPEPSQHHPFPLG-AFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPA 61
LP P HP+ AF L + L G P+ P G G GA G GPG +
Sbjct: 344 LPPPLFPHPYGFPTAFGLCPKKDDPVL---GAGEPKGGPGTGSGGGGAGTGGGAGGPGAS 400
Query: 62 ---GGEAGGPCGAA------PGGCASGGCGVMGVSLTV--------------SLSFLSWS 98
G GP G A P G A V + SL S+
Sbjct: 401 HLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPSYP 460
Query: 99 SSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRL-- 156
+++ + A ++A +A + + + E L P G + P+A R L
Sbjct: 461 AAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGPLDE 520
Query: 157 --------PRLSWLPSAGPP--RPGLSVRWRRPLRPGAVRKSQPPGLRRQTAGGRARLGG 206
P L+ LP PP R G V RP+ ++ G R+ G G
Sbjct: 521 DGTDEALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGA----GP 576
Query: 207 ARAVDPGTGWG 217
AR PG G G
Sbjct: 577 ARGPGPGAGSG 587
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 40.4 bits (93), Expect = 0.002
Identities = 79/270 (29%), Positives = 89/270 (32%), Gaps = 48/270 (17%)
Query: 29 RRTGRAPPQSPPPAGPGAPGAPWRRGDEG--PGPAGGEAGGPCGAAPGGCASGG------ 80
RR GR P + APGAP RG G PGP A G P A
Sbjct: 83 RRLGRVPLTFREASPGPAPGAPRARGSCGREPGPRRRRAPSSAGKRPAAAARAAPPRQRS 142
Query: 81 ---CGVMGVSLTVSLSF-LSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPD 136
C V V S S CR R C CR R LP P
Sbjct: 143 LARCLPRSVGSCVRPSVGPSLPRRHCRRHCR------CHCRRR---------PLPKPPPL 187
Query: 137 GRRAGGLQWERPAAALR-TRLPRLSWLPSAGPPRPGLSVRWR-RPLRPGAVRKSQPPGLR 194
R G R AA L +R P LS P R S PL R + G R
Sbjct: 188 QPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGAR 247
Query: 195 RQTAGGRARLGGAR----AVDPGTGWGHCACSR---RRGERRSRRAAGVPGEL------- 240
R+ G R+ G R P G A R RR R+ R+ G PG
Sbjct: 248 RRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGGPGVSPREGAQG 307
Query: 241 -GAPGGHCTRALASTSRAPPR----RGGDP 265
G GG RA S++ P +GG P
Sbjct: 308 EGVRGGVTPRARGSSTCLRPSPATWQGGAP 337
Score = 30.4 bits (67), Expect = 1.7
Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 23/146 (15%)
Query: 21 QRDGKQRL---RRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCA 77
+R G++R RR G A P PAGP A P R G+ + GG G +P A
Sbjct: 249 RRGGEERRVRGRRQGCALGSPPIPAGPAA---PGRAGERRAARQWRKRGGGPGVSPREGA 305
Query: 78 SGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRL------RIFLRTASSELLP 131
G GV G ++ + SS C P+ ++ R R+ +A +E +P
Sbjct: 306 QGE-GVRG-----GVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAPSAEAEEVP 359
Query: 132 AIAPDGRRAGGLQWERPAAALRTRLP 157
G A +E P ++ RT+ P
Sbjct: 360 G----GHTASNPTYE-PLSSRRTKAP 380
>gi|5032105 small optic lobes [Homo sapiens]
Length = 1086
Score = 40.0 bits (92), Expect = 0.002
Identities = 72/257 (28%), Positives = 86/257 (33%), Gaps = 66/257 (25%)
Query: 4 PEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPP---AGPGAPGAPWRRGDEGPGP 60
PEP + PF + TL Q + R RR PPQ PP A +P A R +G G
Sbjct: 224 PEPPRVPPFSPFSSTL-QNNPVPRSRR--EVPPQLQPPVPEAAQPSPSAGCRGAPQGSGW 280
Query: 61 AGGE-------------------AGGPCGAAPGGCASGGCGVMGVSLTV--------SLS 93
AG GG G SG + TV S
Sbjct: 281 AGASRLAELLSGKRLSVLEEEATEGGTSRVEAGSSTSGSDIIDLAGDTVRYTPASPSSPD 340
Query: 94 FLSWSSSRC--RVPARSSAASACSC-RLRIFLRTASSELLPAIAPD---------GRRAG 141
F +WS ++C R P + SAC C +L F P PD GR G
Sbjct: 341 FTTWSCAKCTLRNPTVAPRCSACGCSKLHGFQEHGEP---PTHCPDCGADKPSPCGRSCG 397
Query: 142 GL---------------QWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPLRPGAVR 186
+ QW PA L L L A P L V RR P R
Sbjct: 398 RVSSAQKAARVLPERPGQWACPACTL---LNALRAKHCAACHTPQLLVAQRRGAAPLRRR 454
Query: 187 KSQPPGLRRQTAGGRAR 203
+S RRQT G A+
Sbjct: 455 ESMHVEQRRQTDEGEAK 471
>gi|169169912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 39.7 bits (91), Expect = 0.003
Identities = 56/192 (29%), Positives = 67/192 (34%), Gaps = 33/192 (17%)
Query: 30 RTG-RAPPQSPPPAGPGAPGAPWRRGD-------EGPGPAGGEAGGPCGAAPGGCASGGC 81
RTG P S PP+ P APG R GD G P+ + G P G A GG
Sbjct: 4 RTGWLVPHASFPPSAPAAPGQRGRGGDISLTHRTVGALPSVARSWGDLQWGPCGAARGGT 63
Query: 82 GVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAPDGRRAG 141
G + + SW R A+ C + + PA G RA
Sbjct: 64 GRVPAPPRACVCAGSWQGHLGR-------AARVPCASHTHVGGPGPQAGPAC---GFRAL 113
Query: 142 GLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPLRPGAVRKSQPPGLRRQTAGGR 201
G + P A P S S GP PG WR R GA P R G
Sbjct: 114 G-SAQSPGPATAAGAPGFSRALSPGPVPPG----WRAAPRAGA------PHQRAAATGS- 161
Query: 202 ARLGGARAVDPG 213
GG+R+V G
Sbjct: 162 ---GGSRSVGGG 170
>gi|24497460 Shaw-related voltage-gated potassium channel protein
3 [Homo sapiens]
Length = 757
Score = 39.7 bits (91), Expect = 0.003
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 24 GKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGC 81
G+Q + APP PP + P P P ++ PGPA AG P PG + C
Sbjct: 12 GRQGASKQQPAPPPQPPESPPPPPLPPQQQQPAQPGPAASPAGPPAPRGPGDRRAEPC 69
Score = 29.3 bits (64), Expect = 3.7
Identities = 18/52 (34%), Positives = 19/52 (36%)
Query: 35 PPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMGV 86
P Q P A P P AP GD P G G GG G V+ V
Sbjct: 43 PAQPGPAASPAGPPAPRGPGDRRAEPCPGLPAAAMGRHGGGGGDSGKIVINV 94
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 39.7 bits (91), Expect = 0.003
Identities = 76/272 (27%), Positives = 92/272 (33%), Gaps = 53/272 (19%)
Query: 2 LLPEPSQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGP-GAPGAPWRRGDEGPGP 60
LLP + P G L G+ + G P P GP G G P +G+ GP
Sbjct: 281 LLPPLEEAAHGPRG---LKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVG 337
Query: 61 AGGEAGGPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRI 120
GE G P A G + G G G SL + F S + V A A + +
Sbjct: 338 DPGERGPPGRAGLPG-SDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQA------QA 390
Query: 121 FLRTASSELLPAIAPDGRRAGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRRPL 180
L+ A L P G RP P P PGL L
Sbjct: 391 ILQQARLALRGPPGPMGYTG------RPG-------------PLGQPGSPGLKGE-SGDL 430
Query: 181 RPGAVRKSQ----PPGLRRQTAGGRARLG--GARAV--DPGTGWGHCACSRRRGERRSRR 232
P R Q PPG AG R R G GAR + DPG +G+R
Sbjct: 431 GPQGPRGPQGLTGPPG----KAGRRGRAGADGARGMPGDPGV----------KGDRGFDG 476
Query: 233 AAGVPGELGAPGGHCTRALASTSRAPPRRGGD 264
G+PGE G G + L RG D
Sbjct: 477 LPGLPGEKGHRGDTGAQGLPGPPGEDGERGDD 508
Score = 34.7 bits (78), Expect = 0.089
Identities = 65/265 (24%), Positives = 80/265 (30%), Gaps = 45/265 (16%)
Query: 7 SQHHPFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAG 66
+Q P P GA G Q P PP PG G P +G++GP G G
Sbjct: 570 TQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLG 629
Query: 67 GPCGAAPGGCASGGCGVMGVSLTVSLSFLSWSSSRCRVPARSSAASACSCRLRIFLRTAS 126
P G GV GV L P R + + +
Sbjct: 630 YP----------GPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSR 679
Query: 127 SELLPAIAPDGRRAGGLQWERPAAALRTRLPRLSWLPSAGPPRPGLSVRWRR---PLRPG 183
E P P GR P+ P PGL + P PG
Sbjct: 680 GEDGPE-GPKGRTG----------------------PTGDPGPPGLMGEKGKLGVPGLPG 716
Query: 184 AVRKSQPPG-LRRQTAGGRARLGGARAVDPGTG-WGHCACSRRRGERRSRRAAGVPGELG 241
+ P G L G + GAR + +G G + RG+R R A G G G
Sbjct: 717 YPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKG 776
Query: 242 APGGHCTRALASTSRAPPRRGGDPG 266
GG PP G PG
Sbjct: 777 TSGG-------DGPHGPPGERGLPG 794
Score = 32.7 bits (73), Expect = 0.34
Identities = 27/82 (32%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 11 PFPLGAFTLDQRDGKQRLRRTGRAP--PQSPPPAG----------PGAPGAPWRRGDEGP 58
P P G L GK+ + P P PAG PG G P +G+EGP
Sbjct: 862 PGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGP 921
Query: 59 GPAGGEAGGPCGAAPGGCASGG 80
G AG P G SGG
Sbjct: 922 SGPPGPAGSP--GERGAAGSGG 941
Score = 32.7 bits (73), Expect = 0.34
Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 32 GRAPPQSPP----------PAGPGAP-GAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGG 80
G P PP AG G P G P R G +GP A GE G P P G +G
Sbjct: 917 GNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIG-PTGR 975
Query: 81 CGVMG 85
GV G
Sbjct: 976 DGVQG 980
Score = 32.3 bits (72), Expect = 0.44
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 36 PQSPP--PAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCASGGCGVMG 85
P+ PP P G PG P +RG+ G G G P P G A+G G MG
Sbjct: 804 PKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQG-AAGETGPMG 854
Score = 32.3 bits (72), Expect = 0.44
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 11 PFPLGAFTLDQRDGKQRLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGP-GPAGGEAG-GP 68
P P+G L G++ TG P PP PG G G +GP GP GG GP
Sbjct: 1066 PGPIGLQGLPGPSGEKG--ETGDVGPMGPP-GPPGPRGPAGPNGADGPQGPPGGVGNLGP 1122
Query: 69 CGAAPGGCASGGCGVMG 85
G SG G+ G
Sbjct: 1123 PGEKGEPGESGSPGIQG 1139
Score = 32.3 bits (72), Expect = 0.44
Identities = 63/247 (25%), Positives = 82/247 (33%), Gaps = 42/247 (17%)
Query: 37 QSPPPAGPGAPGAPWRRGDEG----PGPAG--GEAGGPCGAAPGGCASGGCGVMGVSLTV 90
+S P PG PG GD+G PGP G G+ G P P G G G G
Sbjct: 1155 ESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRG-QDGAKGDRGEDGEP 1213
Query: 91 SLSFLSWSSSRCRVPARSSAASACSCRLRIFLRTASSELLPAIAP--DGRRAG-GLQWER 147
+ P PA +P +GR+ G G + +
Sbjct: 1214 GQPGSPGPTGENGPPGPLGKRG------------------PAGSPGSEGRQGGKGAKGDP 1255
Query: 148 PAAALRTRLPRLSWLPSAGPPRP----GLSVRWRRPLRPGAVRKSQPPGLRRQTAGGRAR 203
A + + AG P P GL + RPGA ++ PPG G
Sbjct: 1256 GAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPG-----PVGPPG 1310
Query: 204 LGGARAVDPGTGW----GHCACSRRRGERRSRRAAGVPGELGAPGGHCTRALASTSRAPP 259
L G R G G GE+ + G+PG G+PG + S P
Sbjct: 1311 LPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGAS-GPI 1369
Query: 260 RRGGDPG 266
GG PG
Sbjct: 1370 GPGGPPG 1376
Score = 31.2 bits (69), Expect = 0.98
Identities = 27/59 (45%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 11 PFPLGAFTLDQRDGKQ-RLRRTGRAPPQSPPPAGPGAPGAPWRRGDEGPGPAGGEAGGP 68
P P G L G+Q R TG+A P P P GP PG P RGD G A GE G P
Sbjct: 1276 PGPDGLRGLPGSVGQQGRPGATGQAGP--PGPVGP--PGLPGLRGDAG---AKGEKGHP 1327
Score = 30.4 bits (67), Expect = 1.7
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 32 GRAPPQSPPPAGPGAPGAPWRRGDEGP-GPAG-----GEAGGPCGAAPGGCA 77
GR PQ PP A G G P G++GP GP G G G P A P G A
Sbjct: 947 GRPGPQGPPGAA-GEKGVP---GEKGPIGPTGRDGVQGPVGLPGPAGPPGVA 994
Score = 29.3 bits (64), Expect = 3.7
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 44 PGAPGAPWRRGDEG----PGPAG--GEAGGPCGAAPGGC--ASGGCGVMG 85
PG PG RGD G PGP G GE G P G SG G++G
Sbjct: 478 PGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLG 527
Score = 29.3 bits (64), Expect = 3.7
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 40 PPAGPGAPGAPWRRGDEGP-GPAG-----GEAGGP 68
P PG PG P RG +GP GP G GE G P
Sbjct: 528 PKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPP 562
Score = 29.3 bits (64), Expect = 3.7
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 15/59 (25%)
Query: 40 PPAGPGAPGAPWRRGDEG----PGPAGGEA-GGPCG--------AAPGGCASGGCGVMG 85
PP PG G P G EG PGP G GP G PG +GG G+ G
Sbjct: 861 PPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPG--TAGGPGLKG 917
Score = 28.9 bits (63), Expect = 4.9
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 36 PQSPPPAGP-GAPGAPWRRGDEG-PGPAGGEAGGPCGAAPGGCASGG 80
P SP P G G PG +RG G PG G + G PG + G
Sbjct: 1216 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1262
Score = 28.5 bits (62), Expect = 6.4
Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 11/59 (18%)
Query: 33 RAPPQSPPPAG----------PGAPGAPWRRGDEGP-GPAGGEAGGPCGAAPGGCASGG 80
R P SP G PGA GAP + G GP GPAG PG G
Sbjct: 1234 RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQG 1292
Score = 28.5 bits (62), Expect = 6.4
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 32 GRAPPQSP--PPAGPGAPGAPWRRGDEGPGPAGGEAG--GPCG 70
G + P P PP PG G +G GPG GE G GP G
Sbjct: 1364 GASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPG 1406
Score = 28.1 bits (61), Expect = 8.3
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 35 PPQSPPPAGP-------GAPGAPWRRGDEGPGPAGGEAG 66
PP P P GP GA G P RG +G A G+ G
Sbjct: 1020 PPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEG 1058
Score = 28.1 bits (61), Expect = 8.3
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 30 RTGRAPPQSPP--PAGPGAPGAPWRRGDEGPGPAGGEAGGPCGAAPGGCAS--GGCGVMG 85
+TG P P P G G P G +G A G+AG P P G G G G
Sbjct: 1263 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKG 1322
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,158,794
Number of Sequences: 37866
Number of extensions: 1132309
Number of successful extensions: 20756
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 828
Number of HSP's that attempted gapping in prelim test: 9772
Number of HSP's gapped (non-prelim): 8739
length of query: 266
length of database: 18,247,518
effective HSP length: 100
effective length of query: 166
effective length of database: 14,460,918
effective search space: 2400512388
effective search space used: 2400512388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.