Guide to the Human Genome
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Name: LOC100292234 Sequence: fasta or formatted (296aa) NCBI GI: 239753883
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         40           4
 C cysteine            2.0          6           1
 D aspartate           1.7          5           1
 E glutamate           2.7          8           2
 F phenylalanine       3.4         10           2
 G glycine            11.5         34           2
 H histidine           1.7          5           1
 I isoleucine          1.7          5           1
 K lysine              2.0          6           1
 L leucine             9.5         28           2
 M methionine          0.3          1           1
 N asparagine          0.3          1           1
 P proline            11.1         33           2
 Q glutamine           3.0          9           1
 R arginine           15.5         46           2
 S serine              6.8         20           2
 T threonine           5.1         15           2
 V valine              5.7         17           1
 W tryptophan          0.7          2           1
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290708          1.000   PREDICTED: hypothetical protein XP_002346660 
LOC100288955          1.000   PREDICTED: hypothetical protein XP_002342507 
FLJ37078              0.042   hypothetical protein LOC222183 
LOC729162             0.038   PREDICTED: similar to hCG1981372 
BBC3                  0.038   BCL2 binding component 3 isoform 1 
CASKIN1               0.037   CASK interacting protein 1 
COL1A1                0.037   alpha 1 type I collagen preproprotein 
LOC100293492          0.035   PREDICTED: hypothetical protein 
LOC729162             0.035   PREDICTED: similar to hCG1981372 
LOC389906             0.035   PREDICTED: similar to Serine/threonine-protein kina...
LOC100292184          0.035   PREDICTED: hypothetical protein 
PRR12                 0.035   proline rich 12 
LOC645321             0.035   PREDICTED: hypothetical protein 
LOC645321             0.035   PREDICTED: hypothetical protein 
LOC731282             0.033   PREDICTED: hypothetical protein 
LOC731282             0.033   PREDICTED: hypothetical protein 
DACT3                 0.033   thymus expressed gene 3-like 
FLJ22184              0.031   PREDICTED: hypothetical protein LOC80164 
LOC100291533          0.031   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.031   PREDICTED: hypothetical protein XP_002342946 
LOC100131455          0.030   PREDICTED: hypothetical protein 
LOC100131102          0.030   PREDICTED: hypothetical protein 
LOC100131455          0.030   PREDICTED: hypothetical protein 
LOC100131102          0.030   PREDICTED: hypothetical protein 
LOC100131455          0.030   PREDICTED: hypothetical protein 
TAF4                  0.030   TBP-associated factor 4 
COL4A2                0.030   alpha 2 type IV collagen preproprotein 
SYDE1                 0.030   synapse defective 1, Rho GTPase, homolog 1 
COL1A2                0.030   alpha 2 type I collagen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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