Guide to the Human Genome
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Name: LOC100130458 Sequence: fasta or formatted (230aa) NCBI GI: 169184025
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {230aa} PREDICTED: hypothetical protein
alt mRNA {230aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         23           3
 C cysteine            2.2          5           1
 D aspartate           0.9          2           1
 E glutamate           5.7         13           1
 F phenylalanine       0.9          2           1
 G glycine            13.9         32           2
 H histidine           2.2          5           1
 I isoleucine          1.7          4           1
 K lysine              2.6          6           1
 L leucine             5.7         13           1
 M methionine          0.4          1           1
 N asparagine          2.6          6           1
 P proline            12.6         29           2
 Q glutamine           3.9          9           1
 R arginine           11.7         27           2
 S serine             13.0         30           2
 T threonine           4.3         10           1
 V valine              3.9          9           2
 W tryptophan          1.7          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130458          1.000   PREDICTED: hypothetical protein 
LOC100130458          1.000   PREDICTED: hypothetical protein 
LOC400236             0.042   PREDICTED: hypothetical protein 
LOC400236             0.042   PREDICTED: hypothetical protein 
LOC100289661          0.035   PREDICTED: hypothetical protein 
LOC100289661          0.035   PREDICTED: hypothetical protein XP_002343723 
SAMD1                 0.035   sterile alpha motif domain containing 1 
LOC100129098          0.033   PREDICTED: hypothetical protein 
LOC100129098          0.033   PREDICTED: hypothetical protein 
LOC100129098          0.033   PREDICTED: hypothetical protein 
PRR12                 0.033   proline rich 12 
LOC100290274          0.031   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.031   PREDICTED: hypothetical protein XP_002342846 
ZNF469                0.031   zinc finger protein 469 
MAP3K6                0.031   mitogen-activated protein kinase kinase kinase 6 [Ho...
LOC729570             0.031   PREDICTED: hypothetical protein 
LOC729570             0.031   PREDICTED: hypothetical protein 
LOC729570             0.031   PREDICTED: hypothetical protein 
MICALL2               0.031   MICAL-like 2 isoform 1 
COL11A1               0.031   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.031   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.031   alpha 1 type XI collagen isoform A preproprotein [Ho...
LOC100292589          0.031   PREDICTED: hypothetical protein 
LOC100290121          0.031   PREDICTED: hypothetical protein XP_002346879 
LOC100289406          0.031   PREDICTED: hypothetical protein XP_002342721 
SYNPO2L               0.031   synaptopodin 2-like isoform a 
SYNPO2L               0.031   synaptopodin 2-like isoform b 
FLJ31945              0.029   PREDICTED: hypothetical protein 
LOC100292122          0.029   PREDICTED: hypothetical protein XP_002345138 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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