Guide to the Human Genome
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Name: LOC100129098 Sequence: fasta or formatted (402aa) NCBI GI: 169172508
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {402aa} PREDICTED: hypothetical protein
alt prot {281aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         50           3
 C cysteine            0.7          3           1
 D aspartate           1.7          7           1
 E glutamate           3.0         12           2
 F phenylalanine       0.7          3           1
 G glycine            14.4         58           4
 H histidine           2.5         10           1
 I isoleucine          1.0          4           1
 K lysine              2.2          9           1
 L leucine             7.7         31           4
 M methionine          0.7          3           1
 N asparagine          1.2          5           1
 P proline            12.9         52           3
 Q glutamine           5.2         21           1
 R arginine           14.9         60           3
 S serine              9.0         36           2
 T threonine           3.2         13           1
 V valine              4.0         16           2
 W tryptophan          1.7          7           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129098          0.996   PREDICTED: hypothetical protein 
LOC100129098          0.446   PREDICTED: hypothetical protein 
LOC100289951          0.159   PREDICTED: hypothetical protein XP_002347042 
LOC100287492          0.159   PREDICTED: hypothetical protein XP_002342893 
LOC100291782          0.159   PREDICTED: hypothetical protein XP_002346152 
SRRM2                 0.030   splicing coactivator subunit SRm300 
TNK2                  0.030   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.030   tyrosine kinase, non-receptor, 2 isoform 2 
DACT3                 0.030   thymus expressed gene 3-like 
COL1A1                0.029   alpha 1 type I collagen preproprotein 
COL2A1                0.029   collagen, type II, alpha 1 isoform 2 precursor [Hom...
FLJ31945              0.029   PREDICTED: hypothetical protein 
FLJ31945              0.029   PREDICTED: hypothetical protein 
TAF4                  0.027   TBP-associated factor 4 
COL17A1               0.027   alpha 1 type XVII collagen 
COL2A1                0.026   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL1A2                0.025   alpha 2 type I collagen 
COL5A1                0.025   alpha 1 type V collagen preproprotein 
LOC339192             0.025   PREDICTED: hypothetical protein 
LOC339192             0.025   PREDICTED: hypothetical protein 
WIPF1                 0.025   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.025   WAS/WASL interacting protein family, member 1 
CCDC86                0.025   coiled-coil domain containing 86 
LOC100293055          0.025   PREDICTED: similar to COL22A1 protein 
LOC100290263          0.025   PREDICTED: hypothetical protein XP_002347916 
FLJ22184              0.024   PREDICTED: hypothetical protein FLJ22184 
LOC339192             0.024   PREDICTED: hypothetical protein 
FLJ37078              0.024   hypothetical protein LOC222183 
CACNA1I               0.024   calcium channel, voltage-dependent, T type, alpha 1I...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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