Guide to the Human Genome
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Name: LOC100129098 Sequence: fasta or formatted (281aa) NCBI GI: 169173306
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {402aa} PREDICTED: hypothetical protein
alt prot {402aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         30           3
 C cysteine            0.4          1           1
 D aspartate           0.4          1           1
 E glutamate           3.9         11           2
 F phenylalanine       2.1          6           1
 G glycine            12.8         36           3
 H histidine           2.8          8           1
 I isoleucine          1.4          4           1
 K lysine              2.5          7           1
 L leucine             8.5         24           1
 M methionine          1.4          4           1
 N asparagine          1.1          3           1
 P proline            14.9         42           2
 Q glutamine           3.2          9           1
 R arginine           17.4         49           3
 S serine              8.5         24           2
 T threonine           3.6         10           1
 V valine              3.6         10           2
 W tryptophan          0.7          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129098          0.651   PREDICTED: hypothetical protein 
LOC100129098          0.651   PREDICTED: hypothetical protein 
LOC100289951          0.160   PREDICTED: hypothetical protein XP_002347042 
LOC100287492          0.160   PREDICTED: hypothetical protein XP_002342893 
LOC100291782          0.158   PREDICTED: hypothetical protein XP_002346152 
TNK2                  0.053   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.053   tyrosine kinase, non-receptor, 2 isoform 2 
FLJ22184              0.049   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.047   PREDICTED: hypothetical protein FLJ22184 
LOC100130360          0.044   PREDICTED: hypothetical protein 
TNRC18                0.044   trinucleotide repeat containing 18 
LOC100131455          0.044   PREDICTED: hypothetical protein 
LOC100131455          0.044   PREDICTED: hypothetical protein 
WIPF1                 0.044   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.044   WAS/WASL interacting protein family, member 1 
LOC100129129          0.040   PREDICTED: hypothetical protein 
BSN                   0.040   bassoon protein 
TAF4                  0.038   TBP-associated factor 4 
CCDC86                0.038   coiled-coil domain containing 86 
LOC100291624          0.036   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.036   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.036   PREDICTED: hypothetical protein XP_002342583 
LOC100290263          0.036   PREDICTED: hypothetical protein XP_002347916 
LOC100133885          0.035   PREDICTED: hypothetical protein 
LOC100289242          0.035   PREDICTED: hypothetical protein XP_002342243 
LOC644246             0.035   PREDICTED: hypothetical protein LOC644246 
LOC729575             0.035   PREDICTED: hypothetical protein 
LOC645321             0.035   PREDICTED: hypothetical protein 
LOC100288110          0.035   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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