Guide to the Human Genome
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Name: LOC729983 Sequence: fasta or formatted (295aa) NCBI GI: 169180158
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {295aa} PREDICTED: hypothetical protein
alt prot {295aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         27           2
 C cysteine            4.4         13           1
 D aspartate           2.4          7           1
 E glutamate           3.4         10           2
 F phenylalanine       0.7          2           1
 G glycine            18.3         54           2
 H histidine           2.7          8           1
 I isoleucine          0.7          2           1
 K lysine              0.7          2           1
 L leucine             4.1         12           1
 M methionine          2.7          8           1
 N asparagine          0.3          1           1
 P proline            13.2         39           2
 Q glutamine           7.1         21           2
 R arginine            8.5         25           2
 S serine              8.5         25           2
 T threonine           2.7          8           1
 V valine              7.5         22           1
 W tryptophan          2.7          8           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729983             0.997   PREDICTED: hypothetical protein 
LOC729983             0.901   PREDICTED: hypothetical protein 
PRB3                  0.036   proline-rich protein BstNI subfamily 3 precursor [H...
DAZAP1                0.034   DAZ associated protein 1 isoform b 
SYN1                  0.032   synapsin I isoform Ia 
SYN1                  0.032   synapsin I isoform Ib 
COL1A2                0.031   alpha 2 type I collagen 
TBKBP1                0.028   TBK1 binding protein 1 
WIPF1                 0.026   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.026   WAS/WASL interacting protein family, member 1 
SFPQ                  0.026   splicing factor proline/glutamine rich (polypyrimidin...
COL13A1               0.026   alpha 1 type XIII collagen isoform 10 
PCLO                  0.024   piccolo isoform 2 
PCLO                  0.024   piccolo isoform 1 
TAF4                  0.024   TBP-associated factor 4 
SYT3                  0.024   synaptotagmin III 
SYT3                  0.024   synaptotagmin III 
SYT3                  0.024   synaptotagmin III 
COL7A1                0.023   alpha 1 type VII collagen precursor 
SHANK1                0.023   SH3 and multiple ankyrin repeat domains 1 
COL13A1               0.023   alpha 1 type XIII collagen isoform 14 
LOC100289625          0.023   PREDICTED: hypothetical protein XP_002342465 
COL13A1               0.023   alpha 1 type XIII collagen isoform 18 
ARHGAP9               0.023   Rho GTPase activating protein 9 isoform 1 
ARHGAP9               0.023   Rho GTPase activating protein 9 isoform 2 
COL3A1                0.021   collagen type III alpha 1 preproprotein 
SS18                  0.021   synovial sarcoma translocation, chromosome 18 isofor...
GGN                   0.021   gametogenetin 
LOC100287499          0.019   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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