Guide to the Human Genome
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Name: LOC100289625 Sequence: fasta or formatted (179aa) NCBI GI: 239742249
Description:

PREDICTED: hypothetical protein XP_002342465

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         18           2
 C cysteine            2.8          5           1
 D aspartate           1.1          2           1
 E glutamate           2.2          4           1
 F phenylalanine       1.7          3           1
 G glycine            13.4         24           2
 H histidine           3.9          7           1
 I isoleucine          1.1          2           1
 K lysine              2.8          5           1
 L leucine             5.6         10           1
 M methionine          0.6          1           1
 N asparagine          3.4          6           1
 P proline            15.6         28           2
 Q glutamine           7.8         14           2
 R arginine            8.9         16           2
 S serine              8.9         16           2
 T threonine           5.0          9           1
 V valine              1.7          3           1
 W tryptophan          2.8          5           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342465 
LOC100292143          0.057   PREDICTED: hypothetical protein 
LOC100132261          0.052   PREDICTED: similar to hCG2023245 
LOC651856             0.052   PREDICTED: similar to hCG2023245 
PRB1                  0.046   proline-rich protein BstNI subfamily 1 isoform 3 pre...
COL1A1                0.041   alpha 1 type I collagen preproprotein 
COL4A3                0.041   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.041   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.041   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.041   alpha 3 type IV collagen isoform 1 precursor 
SYN1                  0.041   synapsin I isoform Ia 
SYN1                  0.041   synapsin I isoform Ib 
LOC729983             0.041   PREDICTED: hypothetical protein 
COL9A1                0.041   alpha 1 type IX collagen isoform 1 precursor 
COL9A1                0.041   alpha 1 type IX collagen isoform 2 precursor 
NACA                  0.041   nascent polypeptide-associated complex alpha subuni...
MLL2                  0.038   myeloid/lymphoid or mixed-lineage leukemia 2 
COLEC12               0.038   collectin sub-family member 12 
ARID1A                0.038   AT rich interactive domain 1A isoform a 
ARID1A                0.038   AT rich interactive domain 1A isoform b 
COL2A1                0.038   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.038   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC729983             0.038   PREDICTED: hypothetical protein 
GBF1                  0.038   golgi-specific brefeldin A resistant guanine nucleoti...
COL5A1                0.038   alpha 1 type V collagen preproprotein 
LOC729983             0.038   PREDICTED: hypothetical protein 
COL7A1                0.038   alpha 1 type VII collagen precursor 
PRB1                  0.038   proline-rich protein BstNI subfamily 1 isoform 2 pre...
COL4A1                0.035   alpha 1 type IV collagen preproprotein 
FNDC1                 0.035   fibronectin type III domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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