Guide to the Human Genome
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Name: SYT3 Sequence: fasta or formatted (590aa) NCBI GI: 238550198
Description:

synaptotagmin III

Referenced in:

ER, Golgi, and the Secretory Pathway
Synapses

Other entries for this name:
alt mRNA [590aa] synaptotagmin III
alt mRNA [590aa] synaptotagmin III
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         45           5
 C cysteine            1.5          9           1
 D aspartate           5.9         35           2
 E glutamate           5.8         34           2
 F phenylalanine       2.9         17           1
 G glycine            11.0         65           4
 H histidine           3.1         18           3
 I isoleucine          3.2         19           2
 K lysine              4.9         29           3
 L leucine            11.9         70           4
 M methionine          0.7          4           1
 N asparagine          2.5         15           1
 P proline             8.5         50           2
 Q glutamine           3.1         18           2
 R arginine            5.4         32           2
 S serine              7.6         45           2
 T threonine           4.2         25           2
 V valine              6.6         39           2
 W tryptophan          1.0          6           1
 Y tyrosine            2.5         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptotagmin III 
SYT3                  1.000   synaptotagmin III 
SYT3                  1.000   synaptotagmin III 
SYT9                  0.366   synaptotagmin IX 
SYT10                 0.360   synaptotagmin X 
SYT6                  0.329   synaptotagmin VI 
SYT2                  0.218   synaptotagmin II 
SYT2                  0.218   synaptotagmin II 
SYT1                  0.217   synaptotagmin I 
SYT1                  0.217   synaptotagmin I 
SYT1                  0.217   synaptotagmin I 
SYT5                  0.208   synaptotagmin V 
SYT7                  0.174   synaptotagmin VII 
SYT11                 0.157   synaptotagmin XI 
SYT4                  0.146   synaptotagmin IV 
SYT17                 0.135   B/K protein 
RPH3A                 0.119   rabphilin 3A homolog isoform 1 
RPH3A                 0.119   rabphilin 3A homolog isoform 2 
SYT15                 0.119   synaptotagmin XV isoform a 
SYT8                  0.111   synaptotagmin VIII 
SYT12                 0.106   synaptotagmin XII 
DOC2A                 0.103   double C2-like domains, alpha 
SYT15                 0.101   synaptotagmin XV isoform b 
DOC2B                 0.100   double C2-like domains, beta 
SYTL4                 0.089   synaptotagmin-like 4 
SYTL4                 0.089   synaptotagmin-like 4 
SYTL1                 0.080   synaptotagmin-like 1 
SYT13                 0.076   synaptotagmin XIII 
SYTL2                 0.074   synaptotagmin-like 2 isoform a 
SYTL2                 0.074   synaptotagmin-like 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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