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Search of human proteins with 169179759
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169179759 PREDICTED: hypothetical protein [Homo sapiens]
(295 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169179759 PREDICTED: hypothetical protein [Homo sapiens] 642 0.0
gi|169180158 PREDICTED: hypothetical protein [Homo sapiens] 640 0.0
gi|169183882 PREDICTED: hypothetical protein [Homo sapiens] 582 e-166
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 47 2e-05
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 46 3e-05
gi|19924099 synapsin I isoform Ia [Homo sapiens] 45 8e-05
gi|19924097 synapsin I isoform Ib [Homo sapiens] 45 8e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens] 44 1e-04
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 42 6e-04
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 41 0.001
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 41 0.001
gi|150170670 piccolo isoform 2 [Homo sapiens] 41 0.001
gi|150378539 piccolo isoform 1 [Homo sapiens] 41 0.001
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 41 0.001
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 41 0.001
gi|110832843 TBP-associated factor 4 [Homo sapiens] 40 0.003
gi|238550198 synaptotagmin III [Homo sapiens] 40 0.003
gi|238550196 synaptotagmin III [Homo sapiens] 40 0.003
gi|14150054 synaptotagmin III [Homo sapiens] 40 0.003
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 40 0.003
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 39 0.004
gi|239742249 PREDICTED: hypothetical protein XP_002342465 [Homo ... 39 0.005
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 39 0.005
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 39 0.007
gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo sap... 39 0.007
gi|122939151 Rho GTPase activating protein 9 isoform 2 [Homo sap... 39 0.007
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 38 0.009
gi|56117844 synovial sarcoma translocation, chromosome 18 isofor... 38 0.012
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 38 0.012
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 38 0.012
>gi|169179759 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 642 bits (1656), Expect = 0.0
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MGSAAQGPRCGVRVCGAQGPRCGVSVWGCRAPDVGSVGVGRRVPDAGSECVGHRAPDAGS 60
MGSAAQGPRCGVRVCGAQGPRCGVSVWGCRAPDVGSVGVGRRVPDAGSECVGHRAPDAGS
Sbjct: 1 MGSAAQGPRCGVRVCGAQGPRCGVSVWGCRAPDVGSVGVGRRVPDAGSECVGHRAPDAGS 60
Query: 61 VCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQ 120
VCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQ
Sbjct: 61 VCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQ 120
Query: 121 IVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGL 180
IVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGL
Sbjct: 121 IVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGL 180
Query: 181 QECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSA 240
QECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSA
Sbjct: 181 QECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSA 240
Query: 241 VGGPMAAGEKPPVSRLGSAHQGLPTSAFEGACHALGDPGIFTGLEAGDRTVSVPG 295
VGGPMAAGEKPPVSRLGSAHQGLPTSAFEGACHALGDPGIFTGLEAGDRTVSVPG
Sbjct: 241 VGGPMAAGEKPPVSRLGSAHQGLPTSAFEGACHALGDPGIFTGLEAGDRTVSVPG 295
>gi|169180158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 640 bits (1652), Expect = 0.0
Identities = 294/295 (99%), Positives = 295/295 (100%)
Query: 1 MGSAAQGPRCGVRVCGAQGPRCGVSVWGCRAPDVGSVGVGRRVPDAGSECVGHRAPDAGS 60
MGSAAQGPRCGVRVCGAQGPRCGVSVWGCRAPDVGSVGVGRRVPDAGSECVGHRAPDAGS
Sbjct: 1 MGSAAQGPRCGVRVCGAQGPRCGVSVWGCRAPDVGSVGVGRRVPDAGSECVGHRAPDAGS 60
Query: 61 VCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQ 120
VCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQ
Sbjct: 61 VCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQ 120
Query: 121 IVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGL 180
IVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGL
Sbjct: 121 IVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGL 180
Query: 181 QECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSA 240
QECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSA
Sbjct: 181 QECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSA 240
Query: 241 VGGPMAAGEKPPVSRLGSAHQGLPTSAFEGACHALGDPGIFTGLEAGDRTVSVPG 295
VGGP+AAGEKPPVSRLGSAHQGLPTSAFEGACHALGDPGIFTGLEAGDRTVSVPG
Sbjct: 241 VGGPVAAGEKPPVSRLGSAHQGLPTSAFEGACHALGDPGIFTGLEAGDRTVSVPG 295
>gi|169183882 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 582 bits (1501), Expect = e-166
Identities = 278/307 (90%), Positives = 278/307 (90%), Gaps = 24/307 (7%)
Query: 1 MGSAAQGPRCGVRVCGAQGPRCGVSVWGCRAPDVGSVGVGR------------RVPDAGS 48
MGSAAQGPRCGVRVCGAQGPRCGVSVWGCRAPDVGSVGVGR RVPDAGS
Sbjct: 1 MGSAAQGPRCGVRVCGAQGPRCGVSVWGCRAPDVGSVGVGRRVPDAGSECVGHRVPDAGS 60
Query: 49 ECVGHRAPDAGSVCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQ 108
ECVGHRAPDAGSVCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQ W AG PMRGQ
Sbjct: 61 ECVGHRAPDAGSVCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQCVWRAGPPMRGQ 120
Query: 109 SVWGAGPPMRGQIVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQ 168
IVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQ
Sbjct: 121 ------------IVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQ 168
Query: 169 PHRATSPAAPGLQECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPPGQEREQVLRAC 228
PHRATSPAAPGLQECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPPGQEREQVLRAC
Sbjct: 169 PHRATSPAAPGLQECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPPGQEREQVLRAC 228
Query: 229 APQPQHQVDCSAVGGPMAAGEKPPVSRLGSAHQGLPTSAFEGACHALGDPGIFTGLEAGD 288
APQPQHQVDCS VGGPMAAGEKPPVSRLGSAHQGLPTSAFEGACHALGDPGIFTGLEAGD
Sbjct: 229 APQPQHQVDCSTVGGPMAAGEKPPVSRLGSAHQGLPTSAFEGACHALGDPGIFTGLEAGD 288
Query: 289 RTVSVPG 295
RTVSVPG
Sbjct: 289 RTVSVPG 295
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 47.0 bits (110), Expect = 2e-05
Identities = 60/207 (28%), Positives = 72/207 (34%), Gaps = 19/207 (9%)
Query: 66 GPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQIVWSA 125
GPP R G G P +G + GPP R G G P +G + PP G+
Sbjct: 112 GPPPRP--GKPEGPPPQGGNQ-SQGPPPRP--GKPEGPPPQGGNQSQGPPPRPGK---PE 163
Query: 126 GPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQP------HRATSPAAPG 179
GPP G P H + GP Q GN P P+ P P PG
Sbjct: 164 GPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPG 223
Query: 180 LQECPRTGPSQPSMQLPSYP--EEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVD 237
E P + P +P +G G+K RP PPG R Q PQ +
Sbjct: 224 KPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPG--RPQGPPPPGGNPQQPLP 281
Query: 238 CSAVGGPMAAGEKPPVSRLGSAHQGLP 264
A G P P R QG P
Sbjct: 282 PPA-GKPQGPPPPPQGGRPHRPPQGQP 307
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 46.2 bits (108), Expect = 3e-05
Identities = 56/223 (25%), Positives = 76/223 (34%), Gaps = 36/223 (16%)
Query: 1 MGSAAQGPRCGVRVCGAQGP-RCGVSVWGCRAPDVGSVGVGRRVPDAGSECVGHRAP--D 57
MG + R R +Q P + G S WG R + G + P + G +
Sbjct: 179 MGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVP 238
Query: 58 AGSVCGGAGPPMRGQWGWGAGSPMRGQSVW---GAGPPMRGQWGWGAGSPMRGQSVWGAG 114
AG GG GPP G+ P V G PP +G + G G+P + +G
Sbjct: 239 AGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQG-FPQGYGAPPQFSFGYGPP 297
Query: 115 PPMRGQIVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATS 174
PP Q PP V P P++ P S
Sbjct: 298 PPPPDQF----APPGVP-------------------------PPPATPGAAPLAFPPPPS 328
Query: 175 PAAPGLQECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPP 217
AAP + + P P P Q Y ++ SG +G D PP
Sbjct: 329 QAAPDMSKPPTAQPDFPYGQYAGYGQDLSGFGQGFSDPSQQPP 371
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 45.1 bits (105), Expect = 8e-05
Identities = 56/231 (24%), Positives = 83/231 (35%), Gaps = 26/231 (11%)
Query: 30 RAPDVGSVGVGRRVPD--AGSECVGHRAPDAGSVCGGAGPPMRGQWGWGAGSPMRGQSVW 87
+ P G++ +GR+ AG P G G GP +G P Q +
Sbjct: 435 QTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLS 494
Query: 88 GAGPPMRGQWGWGAGSPMRG--QSVWGAGPPMRGQIVWS---AGPPRVQGTLVHCPTRHL 142
G GPP SP Q A PP +GQ S AG P P
Sbjct: 495 GLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAP------PAARP 548
Query: 143 SQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECPR------TGPSQPSMQLP 196
P RQ G + ++ P P + +P ++ P GP++ + Q
Sbjct: 549 PASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAG 608
Query: 197 SYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVD---CSAVGGP 244
P G ++ + + PGP G+ + Q+ A +P V +A GGP
Sbjct: 609 PVPRTGPPTTQQPRPSGPGPAGRPKPQL----AQKPSQDVPPPATAAAGGP 655
Score = 37.0 bits (84), Expect = 0.021
Identities = 54/199 (27%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 68 PMRGQWGW----GAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQIVW 123
P RG G GA R S AGPP + + G P G GPP++ +
Sbjct: 428 PGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQR--- 484
Query: 124 SAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEP-SSMLTCPQQPHRATSPAAPGL-- 180
PP+ Q +HLS G G G+ LP+ S + PQQP +P G
Sbjct: 485 --PPPQGQ--------QHLS---GLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGR 531
Query: 181 QECPRTG----------PSQPSMQLPSYPEEGSGLSRGHKDARP----GPPGQEREQVLR 226
Q P G P+ PS Q + P + + + A P PPG ++ Q
Sbjct: 532 QSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPP 591
Query: 227 ACAPQPQHQVDCSAVGGPM 245
P P ++ GP+
Sbjct: 592 QKPPGPAGPTRQASQAGPV 610
Score = 36.2 bits (82), Expect = 0.035
Identities = 37/141 (26%), Positives = 48/141 (34%), Gaps = 13/141 (9%)
Query: 140 RHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECP--RTGPSQPSMQLPS 197
R + PGR P P ++ P + PA P Q+ P + GP QP P
Sbjct: 420 RQRQRDASPGRGSHGQTPSPGAL---PLGRQTSQQPAGPPAQQRPPPQGGPPQPG---PG 473
Query: 198 YPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSAVGGPMAAGEKPPVSRLG 257
+G L + RP P GQ+ L A P Q S P + G
Sbjct: 474 PQRQGPPLQQ-----RPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQG 528
Query: 258 SAHQGLPTSAFEGACHALGDP 278
Q P + GA A P
Sbjct: 529 QGRQSRPVAGGPGAPPAARPP 549
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 45.1 bits (105), Expect = 8e-05
Identities = 56/231 (24%), Positives = 83/231 (35%), Gaps = 26/231 (11%)
Query: 30 RAPDVGSVGVGRRVPD--AGSECVGHRAPDAGSVCGGAGPPMRGQWGWGAGSPMRGQSVW 87
+ P G++ +GR+ AG P G G GP +G P Q +
Sbjct: 435 QTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLS 494
Query: 88 GAGPPMRGQWGWGAGSPMRG--QSVWGAGPPMRGQIVWS---AGPPRVQGTLVHCPTRHL 142
G GPP SP Q A PP +GQ S AG P P
Sbjct: 495 GLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAP------PAARP 548
Query: 143 SQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECPR------TGPSQPSMQLP 196
P RQ G + ++ P P + +P ++ P GP++ + Q
Sbjct: 549 PASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAG 608
Query: 197 SYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVD---CSAVGGP 244
P G ++ + + PGP G+ + Q+ A +P V +A GGP
Sbjct: 609 PVPRTGPPTTQQPRPSGPGPAGRPKPQL----AQKPSQDVPPPATAAAGGP 655
Score = 37.0 bits (84), Expect = 0.021
Identities = 54/199 (27%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 68 PMRGQWGW----GAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQIVW 123
P RG G GA R S AGPP + + G P G GPP++ +
Sbjct: 428 PGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQR--- 484
Query: 124 SAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEP-SSMLTCPQQPHRATSPAAPGL-- 180
PP+ Q +HLS G G G+ LP+ S + PQQP +P G
Sbjct: 485 --PPPQGQ--------QHLS---GLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGR 531
Query: 181 QECPRTG----------PSQPSMQLPSYPEEGSGLSRGHKDARP----GPPGQEREQVLR 226
Q P G P+ PS Q + P + + + A P PPG ++ Q
Sbjct: 532 QSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPP 591
Query: 227 ACAPQPQHQVDCSAVGGPM 245
P P ++ GP+
Sbjct: 592 QKPPGPAGPTRQASQAGPV 610
Score = 36.2 bits (82), Expect = 0.035
Identities = 37/141 (26%), Positives = 48/141 (34%), Gaps = 13/141 (9%)
Query: 140 RHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECP--RTGPSQPSMQLPS 197
R + PGR P P ++ P + PA P Q+ P + GP QP P
Sbjct: 420 RQRQRDASPGRGSHGQTPSPGAL---PLGRQTSQQPAGPPAQQRPPPQGGPPQPG---PG 473
Query: 198 YPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSAVGGPMAAGEKPPVSRLG 257
+G L + RP P GQ+ L A P Q S P + G
Sbjct: 474 PQRQGPPLQQ-----RPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQG 528
Query: 258 SAHQGLPTSAFEGACHALGDP 278
Q P + GA A P
Sbjct: 529 QGRQSRPVAGGPGAPPAARPP 549
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 44.3 bits (103), Expect = 1e-04
Identities = 91/323 (28%), Positives = 114/323 (35%), Gaps = 77/323 (23%)
Query: 16 GAQGPRCGVSVWGCRAP--------DVGSVG-VGRRVPDAGSECVGHRAPDAGSVCGGAG 66
GA GP + G P + G VG VG P S G R A + GG G
Sbjct: 598 GAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERG--AAGIPGGKG 655
Query: 67 ----PPMRGQWGWGAGSPMRGQ--SVWGAGPPM----RGQWGWGA--------GSPMRGQ 108
P +RG+ G RG +V GP RG+ G GSP
Sbjct: 656 EKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERG 715
Query: 109 SVWGAGPPMRGQIVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTC--P 166
V AGP +AG P +G +R G + N + P+ + P
Sbjct: 716 EVGPAGPNGFAGPAGAAGQPGAKG-----------ERGAKGPKGENGVVGPTGPVGAAGP 764
Query: 167 QQPHRATSPAA-------PGLQECP----RTGPSQPSMQLPSYPEEGSGLSRGHKDARPG 215
P+ PA PG+ P RTGP PS G+S PG
Sbjct: 765 AGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPS-----------GIS-----GPPG 808
Query: 216 PPGQEREQVLRACAPQPQ---HQVDCSAVGGPMAAGEKPPVSRLGSAHQGLPTSAFEGAC 272
PPG ++ LR + AVG P AGEK P G+A G P + G
Sbjct: 809 PPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTA--GPPGT--PGPQ 864
Query: 273 HALGDPGIFTGLEAGDRTVSVPG 295
LG PGI GL +PG
Sbjct: 865 GLLGAPGIL-GLPGSRGERGLPG 886
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 42.0 bits (97), Expect = 6e-04
Identities = 45/145 (31%), Positives = 52/145 (35%), Gaps = 38/145 (26%)
Query: 142 LSQRRGPGRQCGNSLPEPSSMLTCP----------------QQPHRATSPAAPGLQECP- 184
LSQR P QC + P + CP P + SPA+P CP
Sbjct: 337 LSQRHSPAPQCPSPSPPARAAPPCPPCQSPVPQRRSPVPPCPSPQQRRSPASP---SCPS 393
Query: 185 ----RTGPSQPSMQLPSYPEEGSGL--SRGHKDARPGPPGQEREQVL--RACAPQPQHQV 236
R P PS Q PS P+ S + S RP PP E+ L RA A P H V
Sbjct: 394 PVPQRRSPVPPSCQSPS-PQRRSPVPPSCPAPQPRPPPPPPPGERTLAERAYAKPPSHHV 452
Query: 237 DCSAVG---------GPMAAGEKPP 252
G G AG PP
Sbjct: 453 KAGFQGRRSYSELAEGAAYAGASPP 477
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 41.2 bits (95), Expect = 0.001
Identities = 55/227 (24%), Positives = 69/227 (30%), Gaps = 41/227 (18%)
Query: 59 GSVCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPM------RGQSVWG 112
G+ GG G G G+G G G +G G P + AG P R G
Sbjct: 64 GAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGG 123
Query: 113 AGPPM-----RGQIVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEP-------- 159
+ PP+ R PP G P R GP N +P P
Sbjct: 124 SRPPLLPPGGRSTSAKPFSPPSGPGRF---PVPSPGHRSGPPEPQRNRMPPPRPDVGSKP 180
Query: 160 --------SSMLTCPQQPHRATSPAAPGLQECPRTGPSQPSMQLPSYPEEGSGLSRGHKD 211
S+ PH SP PG P GP+ P P G+ L G
Sbjct: 181 DSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPP----PFPGNRGTALGGGSIR 236
Query: 212 ARP---GPPGQEREQVLRACAPQPQHQVDCSAVGGPMAAGEKPPVSR 255
P P R + P P +D P G +P + R
Sbjct: 237 QSPLSSSSPFSNRPPL----PPTPSRALDDKPPPPPPPVGNRPSIHR 279
Score = 33.1 bits (74), Expect = 0.30
Identities = 47/196 (23%), Positives = 63/196 (32%), Gaps = 37/196 (18%)
Query: 91 PPMRGQWGWGAG------SPMRGQSVWGAGPPM--RGQIVWSAGPPRVQGTLVHCPTRHL 142
PP G G G SP+ S + PP+ PP + + P+ H
Sbjct: 220 PPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHR 279
Query: 143 SQRRGPGRQCGN----SLPEPSSMLTCPQQPHRATSPAAPGLQECPRTGPSQPSMQLPSY 198
P Q S P PS+ P P + P P P S + + P
Sbjct: 280 EAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPP-----PLPPSSSGNDETPRL 334
Query: 199 PEEGSGLSR--------GHKDARPGPPGQEREQVLRACAPQPQHQVDCSAVGGPMAAGEK 250
P+ LS G P PP + +R D GP+
Sbjct: 335 PQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVR----------DPPGRSGPLPP--P 382
Query: 251 PPVSRLGSAHQGLPTS 266
PPVSR GS + LP +
Sbjct: 383 PPVSRNGSTSRALPAT 398
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 41.2 bits (95), Expect = 0.001
Identities = 55/227 (24%), Positives = 69/227 (30%), Gaps = 41/227 (18%)
Query: 59 GSVCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPM------RGQSVWG 112
G+ GG G G G+G G G +G G P + AG P R G
Sbjct: 64 GAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGG 123
Query: 113 AGPPM-----RGQIVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEP-------- 159
+ PP+ R PP G P R GP N +P P
Sbjct: 124 SRPPLLPPGGRSTSAKPFSPPSGPGRF---PVPSPGHRSGPPEPQRNRMPPPRPDVGSKP 180
Query: 160 --------SSMLTCPQQPHRATSPAAPGLQECPRTGPSQPSMQLPSYPEEGSGLSRGHKD 211
S+ PH SP PG P GP+ P P G+ L G
Sbjct: 181 DSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPP----PFPGNRGTALGGGSIR 236
Query: 212 ARP---GPPGQEREQVLRACAPQPQHQVDCSAVGGPMAAGEKPPVSR 255
P P R + P P +D P G +P + R
Sbjct: 237 QSPLSSSSPFSNRPPL----PPTPSRALDDKPPPPPPPVGNRPSIHR 279
Score = 33.1 bits (74), Expect = 0.30
Identities = 47/196 (23%), Positives = 63/196 (32%), Gaps = 37/196 (18%)
Query: 91 PPMRGQWGWGAG------SPMRGQSVWGAGPPM--RGQIVWSAGPPRVQGTLVHCPTRHL 142
PP G G G SP+ S + PP+ PP + + P+ H
Sbjct: 220 PPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHR 279
Query: 143 SQRRGPGRQCGN----SLPEPSSMLTCPQQPHRATSPAAPGLQECPRTGPSQPSMQLPSY 198
P Q S P PS+ P P + P P P S + + P
Sbjct: 280 EAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPP-----PLPPSSSGNDETPRL 334
Query: 199 PEEGSGLSR--------GHKDARPGPPGQEREQVLRACAPQPQHQVDCSAVGGPMAAGEK 250
P+ LS G P PP + +R D GP+
Sbjct: 335 PQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVR----------DPPGRSGPLPP--P 382
Query: 251 PPVSRLGSAHQGLPTS 266
PPVSR GS + LP +
Sbjct: 383 PPVSRNGSTSRALPAT 398
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 41.2 bits (95), Expect = 0.001
Identities = 49/180 (27%), Positives = 66/180 (36%), Gaps = 10/180 (5%)
Query: 84 QSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQIVWSAGPPRVQGTLVHCPTRHLS 143
Q + A PP + S G P + GP + V P + L+
Sbjct: 364 QPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTP-KPLA 422
Query: 144 QRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPA---APGLQECPRTGPSQPSMQLPSYPE 200
Q+ PG Q P P+ T QQP PA PG +TGP++P QLP P
Sbjct: 423 QQ--PGLQSPAKAPGPTK--TPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPG-PA 477
Query: 201 EGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSAVGGPMAAGE-KPPVSRLGSA 259
+ G P PG + + + +P Q A P G KPP + GSA
Sbjct: 478 KPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSA 537
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 41.2 bits (95), Expect = 0.001
Identities = 49/180 (27%), Positives = 66/180 (36%), Gaps = 10/180 (5%)
Query: 84 QSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQIVWSAGPPRVQGTLVHCPTRHLS 143
Q + A PP + S G P + GP + V P + L+
Sbjct: 364 QPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTP-KPLA 422
Query: 144 QRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPA---APGLQECPRTGPSQPSMQLPSYPE 200
Q+ PG Q P P+ T QQP PA PG +TGP++P QLP P
Sbjct: 423 QQ--PGLQSPAKAPGPTK--TPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPG-PA 477
Query: 201 EGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSAVGGPMAAGE-KPPVSRLGSA 259
+ G P PG + + + +P Q A P G KPP + GSA
Sbjct: 478 KPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSA 537
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 41.2 bits (95), Expect = 0.001
Identities = 47/162 (29%), Positives = 61/162 (37%), Gaps = 30/162 (18%)
Query: 94 RGQWGWGAGSPMRGQSVWGAGPPMRGQIVWSAGPPRVQGTLVHCPTRHLSQRRGP-GRQC 152
R + G G G RG G G RG + PP P L+Q RGP G
Sbjct: 7 RSRGGGGGGFHRRGG---GGG---RGGLHDFRSPP---------PGMGLNQNRGPMGPGP 51
Query: 153 GNSLPEPSSMLTCPQQPHRATSPAAPGLQECPRTGPSQPSMQLPSYPEEGSGLSRGHKDA 212
G S P+P P Q + P P Q+ P P QP P +P+ H+
Sbjct: 52 GQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPP---PHQP----PPHPQP-------HQQQ 97
Query: 213 RPGPPGQEREQVLRACAPQPQHQVDCSAVGGPMAAGEKPPVS 254
+P PP Q+ + + A P P V + A PP S
Sbjct: 98 QPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTS 139
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 40.8 bits (94), Expect = 0.001
Identities = 45/170 (26%), Positives = 56/170 (32%), Gaps = 26/170 (15%)
Query: 135 VHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQ------PHRATSPAAPGLQEC-PRTG 187
+H R + + PG C + P+ P P R SP GL PR
Sbjct: 102 LHSRRRREAPKTSPGCNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGP 161
Query: 188 PSQPSMQ-------------LPSYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQH 234
P QP + P +P + +PGP GQ+ E+ P
Sbjct: 162 PGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRGE 221
Query: 235 QVDCSAVGGPMAAGEKPPVSRLGSAHQGLP----TSAFEGACHALGDPGI 280
Q S G P G P LG H GLP G GDPGI
Sbjct: 222 QSQASIQGPPGPPGPPGPSGPLG--HPGLPGPMGPPGLPGPPGPKGDPGI 269
Score = 30.0 bits (66), Expect = 2.5
Identities = 70/255 (27%), Positives = 97/255 (38%), Gaps = 29/255 (11%)
Query: 57 DAGSVCGGA----GPP-MRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVW 111
DAG+ GG GPP + G G + + GQ P +G+ G AG
Sbjct: 334 DAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG-AAGEQGPDGPKG 392
Query: 112 GAGPPMRGQIVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHR 171
G P +G++V G + L T L G Q G P P Q
Sbjct: 393 SKGEPGKGEMVDYNG--NINEALQEIRTLALMGPPGLPGQIG-----PPGAPGIPGQKGE 445
Query: 172 ATSPAAPGL--QECPRTGPSQPSMQLPSYP--EEGSGLSRGHKDARPGPPGQEREQVLRA 227
P PG ++ PR P P P ++G +G ++ PG PG++ E+
Sbjct: 446 IGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKG-ENGHPGSPGEKGEKGETG 504
Query: 228 CAPQPQHQVDCSAVGGPMA-----AGEKPPVSRLGSAHQGLPTSAFE-GACHALGDPGIF 281
A P + + G P A G + P G QG+P E G A G+ G F
Sbjct: 505 QAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGL--QGVPGPKGEAGLDGAKGEKG-F 561
Query: 282 TGLEAGDR-TVSVPG 295
G E GDR + +PG
Sbjct: 562 QG-EKGDRGPLGLPG 575
Score = 29.3 bits (64), Expect = 4.3
Identities = 45/173 (26%), Positives = 61/173 (35%), Gaps = 28/173 (16%)
Query: 66 GPP-MRGQWG--WGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQIV 122
GPP + GQ G G P + + GPP G P GPP +
Sbjct: 423 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKD--- 479
Query: 123 WSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGN------SLPEPSSMLTCPQQPHRATSPA 176
GPP V+G H + +G Q G+ + + + P P P
Sbjct: 480 ---GPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG 536
Query: 177 APGLQECPRTGPSQPSMQLPSYPEEGSGLSRGHK-----------DARPGPPG 218
PGLQ P GP + + E+G +G + D RPGPPG
Sbjct: 537 PPGLQGVP--GPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPG 587
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 39.7 bits (91), Expect = 0.003
Identities = 68/273 (24%), Positives = 84/273 (30%), Gaps = 39/273 (14%)
Query: 35 GSVGVGRRVPDAGSECVGHRAPDAGSVCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPP-- 92
G+ G G P G+ P AG G G P R G SP R G PP
Sbjct: 69 GAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRP----GPPSPRRPLVPAGPAPPAA 124
Query: 93 -MRGQWGWGAGS--PMRGQSVWGAGPPMRGQIVWSAGPPRVQGTLVHC--------PTRH 141
+R AGS P+ + AGP AGP + G P
Sbjct: 125 KLRPPPEGSAGSCAPVPAAAAVAAGPEPA-----PAGPAKPAGPAALAARAGPGPGPGPG 179
Query: 142 LSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQE-----CPRTGPSQPSMQLP 196
GPG+ G + + H A +PA + P P+ P +
Sbjct: 180 PGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQ 239
Query: 197 SYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSA------VGGPMAAGEK 250
+ P G+ A P PP A P P A G P AA
Sbjct: 240 TPPFVGAAAPPA--PAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAV 297
Query: 251 PPVSRL---GSAHQG-LPTSAFEGACHALGDPG 279
PP + GSA P A G G PG
Sbjct: 298 PPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPG 330
>gi|238550198 synaptotagmin III [Homo sapiens]
Length = 590
Score = 39.7 bits (91), Expect = 0.003
Identities = 51/181 (28%), Positives = 70/181 (38%), Gaps = 25/181 (13%)
Query: 82 RGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQIVWSAGPPRVQGTLVHCPTRH 141
+G S G GP +R G G G V G G + + G P + G H H
Sbjct: 86 KGGSAVGGGP-LRKDLGPGVGL---AGLVGGGGHHLAAGL---GGHPLLGGPHHHAHAAH 138
Query: 142 ---LSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECPRTGPSQPSMQLPSY 198
++ PG G+ PEPS L P A + A G++ PSQ S +LPS
Sbjct: 139 HPPFAELLEPGSLGGSDTPEPS-YLDMDSYPEAAAAAVAAGVK------PSQTSPELPSE 191
Query: 199 PEEGSGLSRGHKDARPGPPGQEREQVLR-------ACAPQPQHQVDCSAVGGPMAAGEKP 251
GSGL P Q +QV P+P Q ++ P ++ E+P
Sbjct: 192 GGAGSGLLLLPPSGGGLPSAQSHQQVTSLAPTTRYPALPRPLTQQTLTSQPDP-SSEERP 250
Query: 252 P 252
P
Sbjct: 251 P 251
>gi|238550196 synaptotagmin III [Homo sapiens]
Length = 590
Score = 39.7 bits (91), Expect = 0.003
Identities = 51/181 (28%), Positives = 70/181 (38%), Gaps = 25/181 (13%)
Query: 82 RGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQIVWSAGPPRVQGTLVHCPTRH 141
+G S G GP +R G G G V G G + + G P + G H H
Sbjct: 86 KGGSAVGGGP-LRKDLGPGVGL---AGLVGGGGHHLAAGL---GGHPLLGGPHHHAHAAH 138
Query: 142 ---LSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECPRTGPSQPSMQLPSY 198
++ PG G+ PEPS L P A + A G++ PSQ S +LPS
Sbjct: 139 HPPFAELLEPGSLGGSDTPEPS-YLDMDSYPEAAAAAVAAGVK------PSQTSPELPSE 191
Query: 199 PEEGSGLSRGHKDARPGPPGQEREQVLR-------ACAPQPQHQVDCSAVGGPMAAGEKP 251
GSGL P Q +QV P+P Q ++ P ++ E+P
Sbjct: 192 GGAGSGLLLLPPSGGGLPSAQSHQQVTSLAPTTRYPALPRPLTQQTLTSQPDP-SSEERP 250
Query: 252 P 252
P
Sbjct: 251 P 251
>gi|14150054 synaptotagmin III [Homo sapiens]
Length = 590
Score = 39.7 bits (91), Expect = 0.003
Identities = 51/181 (28%), Positives = 70/181 (38%), Gaps = 25/181 (13%)
Query: 82 RGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQIVWSAGPPRVQGTLVHCPTRH 141
+G S G GP +R G G G V G G + + G P + G H H
Sbjct: 86 KGGSAVGGGP-LRKDLGPGVGL---AGLVGGGGHHLAAGL---GGHPLLGGPHHHAHAAH 138
Query: 142 ---LSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECPRTGPSQPSMQLPSY 198
++ PG G+ PEPS L P A + A G++ PSQ S +LPS
Sbjct: 139 HPPFAELLEPGSLGGSDTPEPS-YLDMDSYPEAAAAAVAAGVK------PSQTSPELPSE 191
Query: 199 PEEGSGLSRGHKDARPGPPGQEREQVLR-------ACAPQPQHQVDCSAVGGPMAAGEKP 251
GSGL P Q +QV P+P Q ++ P ++ E+P
Sbjct: 192 GGAGSGLLLLPPSGGGLPSAQSHQQVTSLAPTTRYPALPRPLTQQTLTSQPDP-SSEERP 250
Query: 252 P 252
P
Sbjct: 251 P 251
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 39.7 bits (91), Expect = 0.003
Identities = 62/251 (24%), Positives = 78/251 (31%), Gaps = 54/251 (21%)
Query: 64 GAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQIVW 123
G P +RG W G SP G P G G G GS GP +R +
Sbjct: 1042 GPQPSLRG-WRGGGPSPTPG----APSPSHHGSAGGGGGSSQ--------GPALR----Y 1084
Query: 124 SAGPPRVQGTLVHCPTRHLSQRRGP---------GRQCGNSLPEPSSMLTCPQQPHRATS 174
PPR ++ P R R+GP Q G LP P+ T P P +
Sbjct: 1085 FQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLP-PAPSPTSPASPQPPPA 1143
Query: 175 PAAPG----------LQECPRTGPSQPSMQ-------LPSYPEEGSGLSRGHKDARPGPP 217
AAP + + P T S S Q P+ PE G G P P
Sbjct: 1144 VAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPEPTGGGGGGGSSPSPAP- 1202
Query: 218 GQEREQVLRACAPQPQHQVDCSAVGGPMAAGEKPPVSRLGSAHQGLPTSAFEGACHALGD 277
A +P P P S+ G+A G A
Sbjct: 1203 ---------AMSPVPPSPSPVPTPASPSGPATLDFTSQFGAALVGAARREGGWQNEARRR 1253
Query: 278 PGIFTGLEAGD 288
+F +AGD
Sbjct: 1254 STLFLSTDAGD 1264
Score = 29.3 bits (64), Expect = 4.3
Identities = 54/250 (21%), Positives = 78/250 (31%), Gaps = 68/250 (27%)
Query: 86 VWGAGPP--MRGQWGWGAGSPMRGQSVWGAGPPMRGQIV--------------------- 122
+WGA PP R + G+ AG + +S+ + P R ++
Sbjct: 1407 LWGASPPDPARRELGYRAGLGSQEKSLPASPPAARRSLLHRLPPTAPGVGPLLLQLGTEP 1466
Query: 123 ----------W-SAGPPRVQGTLVHC-------PTRHLSQRRGPGRQCGNSLPEPSSMLT 164
W SA P + +H P ++ RGP + G +P PS +
Sbjct: 1467 PAPHPGVSKPWRSAAPEEPERLPLHVRFLENCQPRAPVTSGRGPPSEDGPGVPPPSPRRS 1526
Query: 165 CPQQPHRATSPAAPGLQECPR--TGPSQPSMQ-----------LPSYPEEGSGLSRGHKD 211
P P TSP A P P PS+ LP E + +
Sbjct: 1527 VPPSP---TSPRASEENGLPLLVLPPPAPSVDVEDGEFLFVEPLPPPLEFSNSFEKPESP 1583
Query: 212 ARPGPPGQEREQVLRACAPQPQHQVDCSAVGGPMAAGEKPPVSRLGS---AHQGLPTSAF 268
PGPP P V P A P + S ++ +
Sbjct: 1584 LTPGPP--------HPLPDTPAPATPLPPVPPPAVAAAPPTLDSTASSLTSYDSEVATLT 1635
Query: 269 EGACHALGDP 278
+GA A GDP
Sbjct: 1636 QGASAAPGDP 1645
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 39.3 bits (90), Expect = 0.004
Identities = 85/289 (29%), Positives = 99/289 (34%), Gaps = 37/289 (12%)
Query: 1 MGSAAQGPRCGVRVCGAQGPRCGVSVWGCRAPDVGSVGVGRRVPDAGSECVGHRAPDAGS 60
+G A GP+ G GPR V G R P G V G P G R P
Sbjct: 1545 VGPAVAGPKGEKGDVGPAGPRGATGVQGERGPP-GLVLPGDPGPKGDP---GDRGPI--G 1598
Query: 61 VCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMR-GQWGWGAGSPMRGQSVWGAGPPMRG 119
+ G AGPP G P R GP R G+ G +G GPP
Sbjct: 1599 LTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVG------EKGDE----GPPGDP 1648
Query: 120 QIVWSAGPPRVQGTL-VHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAP 178
+ AG ++G V P + PG N P S +P P P
Sbjct: 1649 GLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEP---GPPGPP 1705
Query: 179 GLQECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDC 238
G TGP P + G RG K PG PG E+ + P Q D
Sbjct: 1706 G--RLVDTGPGAREKGEPG--DRGQEGPRGPK-GDPGLPGAPGERGIEGFRGPPGPQGD- 1759
Query: 239 SAVGGPMAAGEK----PPVSRLGSAHQGLPTSAF----EGACHALGDPG 279
V GP AGEK PP S G P +A GA GDPG
Sbjct: 1760 PGVRGP--AGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPG 1806
Score = 36.6 bits (83), Expect = 0.027
Identities = 57/208 (27%), Positives = 69/208 (33%), Gaps = 35/208 (16%)
Query: 16 GAQGPRCGVSVWGCRAPDVGSVGVGRRVPDAGSECVGHRAPDAGSVCGGAG-PPMRGQWG 74
G QGP + G R G G R P + P A + G G P RG G
Sbjct: 1284 GPQGPPGSATAKGER----GFPGADGR-PGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPG 1338
Query: 75 WGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPP-MRGQI--VWSAGPPRVQ 131
+G+ G P + G G G P R +GPP RG + GPP +
Sbjct: 1339 ERGPRGPKGEP----GAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLP 1394
Query: 132 GTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECPRTGPSQP 191
GT + +R PG G P P PGL P P
Sbjct: 1395 GTAMKGDKGDRGERGPPGPGEGGIAPG---------------EPGLPGL-------PGSP 1432
Query: 192 SMQLPSYPEEGSGLSRGHKDARPGPPGQ 219
Q P P G +D PG PGQ
Sbjct: 1433 GPQGPVGPPGKKGEKGDSEDGAPGLPGQ 1460
Score = 32.3 bits (72), Expect = 0.51
Identities = 70/227 (30%), Positives = 83/227 (36%), Gaps = 27/227 (11%)
Query: 6 QGPRCGVRVCGAQGPRCGVSVWGCRAPDVGSVG-VGRRVPDAGSECVGHRAP--DAGSVC 62
+GP + G G R G R P VG G G D + G P D G
Sbjct: 1642 EGPPGDPGLPGKAGERGLRGAPGVRGP-VGEKGDQGDPGEDGRNGSPGSSGPKGDRGEP- 1699
Query: 63 GGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQIV 122
G GPP R G G+ +G+ P RGQ G P + GA P RG I
Sbjct: 1700 GPPGPPGR-LVDTGPGAREKGE------PGDRGQEG--PRGPKGDPGLPGA-PGERG-IE 1748
Query: 123 WSAGPPRVQGTL-VHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAA---- 177
GPP QG V P R PG G S + P P+ A A
Sbjct: 1749 GFRGPPGPQGDPGVRGPAGEKGDRGPPGLD-GRSGLDGKPGAAGPSGPNGAAGKAGDPGR 1807
Query: 178 ---PGLQ-ECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPPGQE 220
PGL+ E GPS P LP P E K+ PG PG++
Sbjct: 1808 DGLPGLRGEQGLPGPSGPP-GLPGKPGEDGKPGLNGKNGEPGDPGED 1853
Score = 32.0 bits (71), Expect = 0.67
Identities = 79/285 (27%), Positives = 97/285 (34%), Gaps = 39/285 (13%)
Query: 16 GAQGPRCGVSVWGCRAPDVGSVGVGRRVPDAGSECVGHRAPDAGSVCGGAGPP----MRG 71
G GPR G RA + G G + G + G + V G GPP ++G
Sbjct: 2333 GLPGPR-GEKGEAGRAGEPGDPGEDGQKGAPGPK--GFKGDPGVGVPGSPGPPGPPGVKG 2389
Query: 72 QWGWGA--GSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQIVWSAGPPR 129
G G+P GP RG+ G S RG AGPP R I GPP
Sbjct: 2390 DLGLPGLPGAPGVVGFPGQTGP--RGEMGQPGPSGERGL----AGPPGREGIPGPLGPPG 2443
Query: 130 VQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECPR--TG 187
G++ S +G G LP P +P PG QE PR TG
Sbjct: 2444 PPGSV---GPPGASGLKGDKGDPGVGLPGPRGE---RGEPGIRGEDGRPG-QEGPRGLTG 2496
Query: 188 PSQPSMQLPSYPEEGSGLSRGHKD------ARPGPPGQEREQVLRACAPQPQHQVDCSAV 241
P + + GS +G K PGP G + + R +
Sbjct: 2497 PPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLDGDKGPRGDN 2556
Query: 242 GGPMAAGEKPPVSRLGSAHQGLP-------TSAFEGACHALGDPG 279
G P G K GSA GLP GA GDPG
Sbjct: 2557 GDPGDKGSKGEPGDKGSA--GLPGLRGLLGPQGQPGAAGIPGDPG 2599
Score = 28.9 bits (63), Expect = 5.6
Identities = 39/159 (24%), Positives = 49/159 (30%), Gaps = 21/159 (13%)
Query: 128 PRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECPRTG 187
PR + V+CP Q+ PG P P P APG Q P +
Sbjct: 1242 PRPEPCPVYCPK---GQKGEPGEMGLRGQVGP------PGDPGLPGRTGAPGPQGPPGSA 1292
Query: 188 PSQPSMQLPSYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSAVGGPMAA 247
++ P R PG PG + L P + G P A
Sbjct: 1293 TAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAP 1352
Query: 248 GEKPPVSRLGSAHQGLP-------TSAFEGACHALGDPG 279
G+ +G GLP S G LGDPG
Sbjct: 1353 GQV-----IGGEGPGLPGRKGDPGPSGPPGPRGPLGDPG 1386
>gi|239742249 PREDICTED: hypothetical protein XP_002342465 [Homo
sapiens]
Length = 179
Score = 38.9 bits (89), Expect = 0.005
Identities = 47/192 (24%), Positives = 62/192 (32%), Gaps = 43/192 (22%)
Query: 63 GGAGPPMRGQWGWGAG-SPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQI 121
GG PP+ Q W G S +G VW + P + G R +W + I
Sbjct: 4 GGITPPLEAQQPWRGGVSGSQGLQVWNSNPKCQ-----LCGHQPRNTGLWPNRSSFQTDI 58
Query: 122 VWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCP-QQPHRATSPAAPGL 180
SAG C + P P Q + P+
Sbjct: 59 SKSAG----------------------NTGCATAAPAHGGWQWAPLAQGQLSHRPSGTDR 96
Query: 181 QECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSA 240
+ PR GP+QP + RG+ P PG R Q + A QH C
Sbjct: 97 KVAPR-GPTQPPAR------------RGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPR 143
Query: 241 VGGPMAAGEKPP 252
GGP+ GE P
Sbjct: 144 AGGPL-RGEPGP 154
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 38.9 bits (89), Expect = 0.005
Identities = 43/164 (26%), Positives = 55/164 (33%), Gaps = 26/164 (15%)
Query: 135 VHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQEC-PRTGPSQPSM 193
+H R + + PG C + P+ +P SP GL PR P QP
Sbjct: 102 LHSRRRREAPKTSPGCNCPPAFQGPTG------RPGLPGSPGDAGLSIIGPRGPPGQPGT 155
Query: 194 Q-------------LPSYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSA 240
+ P +P + +PGP GQ+ E+ P Q S
Sbjct: 156 RGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASI 215
Query: 241 VGGPMAAGEKPPVSRLGSAHQGLP----TSAFEGACHALGDPGI 280
G P G P LG H GLP G GDPGI
Sbjct: 216 QGPPGPPGPPGPSGPLG--HPGLPGPMGPPGLPGPPGPKGDPGI 257
Score = 30.0 bits (66), Expect = 2.5
Identities = 70/255 (27%), Positives = 97/255 (38%), Gaps = 29/255 (11%)
Query: 57 DAGSVCGGA----GPP-MRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVW 111
DAG+ GG GPP + G G + + GQ P +G+ G AG
Sbjct: 322 DAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG-AAGEQGPDGPKG 380
Query: 112 GAGPPMRGQIVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHR 171
G P +G++V G + L T L G Q G P P Q
Sbjct: 381 SKGEPGKGEMVDYNG--NINEALQEIRTLALMGPPGLPGQIG-----PPGAPGIPGQKGE 433
Query: 172 ATSPAAPGL--QECPRTGPSQPSMQLPSYP--EEGSGLSRGHKDARPGPPGQEREQVLRA 227
P PG ++ PR P P P ++G +G ++ PG PG++ E+
Sbjct: 434 IGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKG-ENGHPGSPGEKGEKGETG 492
Query: 228 CAPQPQHQVDCSAVGGPMA-----AGEKPPVSRLGSAHQGLPTSAFE-GACHALGDPGIF 281
A P + + G P A G + P G QG+P E G A G+ G F
Sbjct: 493 QAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGL--QGVPGPKGEAGLDGAKGEKG-F 549
Query: 282 TGLEAGDR-TVSVPG 295
G E GDR + +PG
Sbjct: 550 QG-EKGDRGPLGLPG 563
Score = 29.3 bits (64), Expect = 4.3
Identities = 45/173 (26%), Positives = 61/173 (35%), Gaps = 28/173 (16%)
Query: 66 GPP-MRGQWG--WGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQIV 122
GPP + GQ G G P + + GPP G P GPP +
Sbjct: 411 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKD--- 467
Query: 123 WSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGN------SLPEPSSMLTCPQQPHRATSPA 176
GPP V+G H + +G Q G+ + + + P P P
Sbjct: 468 ---GPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG 524
Query: 177 APGLQECPRTGPSQPSMQLPSYPEEGSGLSRGHK-----------DARPGPPG 218
PGLQ P GP + + E+G +G + D RPGPPG
Sbjct: 525 PPGLQGVP--GPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPG 575
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 38.5 bits (88), Expect = 0.007
Identities = 41/142 (28%), Positives = 48/142 (33%), Gaps = 22/142 (15%)
Query: 157 PEPSSMLTCPQQPHRATSPAAPGLQEC-PRTGPSQPSMQ-------------LPSYPEEG 202
P+ S CP P SP GL PR P QP + P +P
Sbjct: 111 PKTSPGCNCPPAPQG--SPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPK 168
Query: 203 SGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSAVGGPMAAGEKPPVSRLGSAHQG 262
+ +PGP GQ+ E+ P Q S G P G P LG H G
Sbjct: 169 GDMGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLG--HPG 226
Query: 263 LP----TSAFEGACHALGDPGI 280
LP G GDPGI
Sbjct: 227 LPGPMGPPGLPGPPGPKGDPGI 248
Score = 30.0 bits (66), Expect = 2.5
Identities = 70/255 (27%), Positives = 97/255 (38%), Gaps = 29/255 (11%)
Query: 57 DAGSVCGGA----GPP-MRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVW 111
DAG+ GG GPP + G G + + GQ P +G+ G AG
Sbjct: 313 DAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG-AAGEQGPDGPKG 371
Query: 112 GAGPPMRGQIVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHR 171
G P +G++V G + L T L G Q G P P Q
Sbjct: 372 SKGEPGKGEMVDYNG--NINEALQEIRTLALMGPPGLPGQIG-----PPGAPGIPGQKGE 424
Query: 172 ATSPAAPGL--QECPRTGPSQPSMQLPSYP--EEGSGLSRGHKDARPGPPGQEREQVLRA 227
P PG ++ PR P P P ++G +G ++ PG PG++ E+
Sbjct: 425 IGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKG-ENGHPGSPGEKGEKGETG 483
Query: 228 CAPQPQHQVDCSAVGGPMA-----AGEKPPVSRLGSAHQGLPTSAFE-GACHALGDPGIF 281
A P + + G P A G + P G QG+P E G A G+ G F
Sbjct: 484 QAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGL--QGVPGPKGEAGLDGAKGEKG-F 540
Query: 282 TGLEAGDR-TVSVPG 295
G E GDR + +PG
Sbjct: 541 QG-EKGDRGPLGLPG 554
Score = 29.3 bits (64), Expect = 4.3
Identities = 45/173 (26%), Positives = 61/173 (35%), Gaps = 28/173 (16%)
Query: 66 GPP-MRGQWG--WGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQIV 122
GPP + GQ G G P + + GPP G P GPP +
Sbjct: 402 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKD--- 458
Query: 123 WSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGN------SLPEPSSMLTCPQQPHRATSPA 176
GPP V+G H + +G Q G+ + + + P P P
Sbjct: 459 ---GPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG 515
Query: 177 APGLQECPRTGPSQPSMQLPSYPEEGSGLSRGHK-----------DARPGPPG 218
PGLQ P GP + + E+G +G + D RPGPPG
Sbjct: 516 PPGLQGVP--GPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPG 566
>gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo
sapiens]
Length = 731
Score = 38.5 bits (88), Expect = 0.007
Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 119 GQIVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAP 178
GQ++W+ GP G+L LSQ Q + P P C +T +P
Sbjct: 99 GQLLWTPGPKLFHGSL-----EELSQALPSRAQASSEQPPPLPRKMCRSV---STDNLSP 150
Query: 179 GLQECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQP 232
L + + GPS S+ P E S + G + PP LR C P
Sbjct: 151 SLLKPFQEGPSGRSLSQEDLPSEASASTAGPQPLMSEPPVYCNLVDLRRCPRSP 204
>gi|122939151 Rho GTPase activating protein 9 isoform 2 [Homo
sapiens]
Length = 640
Score = 38.5 bits (88), Expect = 0.007
Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 119 GQIVWSAGPPRVQGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAP 178
GQ++W+ GP G+L LSQ Q + P P C +T +P
Sbjct: 99 GQLLWTPGPKLFHGSL-----EELSQALPSRAQASSEQPPPLPRKMCRSV---STDNLSP 150
Query: 179 GLQECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQP 232
L + + GPS S+ P E S + G + PP LR C P
Sbjct: 151 SLLKPFQEGPSGRSLSQEDLPSEASASTAGPQPLMSEPPVYCNLVDLRRCPRSP 204
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 38.1 bits (87), Expect = 0.009
Identities = 74/292 (25%), Positives = 102/292 (34%), Gaps = 30/292 (10%)
Query: 16 GAQGPRCGVSVWGCRAP--DVGSVGVGRRVPDAGSECVGHRAPDAGSVCGGAGPPMRGQW 73
GAQGP + G ++G G+ P A +G R P + GA P +RG
Sbjct: 378 GAQGPPGPPGINGSPGGKGEMGPAGI----PGAPG-LMGARGPPGPAGANGA-PGLRG-- 429
Query: 74 GWGAGSPMRGQSVWGAGPP-MRGQWGWGAGSPMRGQSVWGAGP--PMRGQIVWSAGPPRV 130
GAG P + + GP RG+ G +G+ P P + +AG
Sbjct: 430 --GAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGA 487
Query: 131 QGTLVHCPTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECPRTGPSQ 190
G + +GP + G P P+ +P R P PG++ P + P
Sbjct: 488 PGFRGPAGPNGIPGEKGPAGERG--APGPAGPRGAAGEPGRDGVPGGPGMRGMPGS-PGG 544
Query: 191 PSMQLPSYPEEGSGLSRGHKDARPGPPGQE--REQVLRACAPQPQHQVDCSAV----GGP 244
P P G + RPGPPG R Q P P+ GGP
Sbjct: 545 PGSDGKPGPPGSQG-----ESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGP 599
Query: 245 MAAGEKPPVSRLG-SAHQGLPTSAFEGACHALGDPGIFTGLEAGDRTVSVPG 295
G + P + G + QG P G P GL+ T PG
Sbjct: 600 GGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPG 651
Score = 35.8 bits (81), Expect = 0.046
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 166 PQQPHRATSPAAPGLQECPRTGPSQPSMQLPSYPEEGSGLSRGHKDARPGPPG 218
P QP SP PG+ E TGP S Q SY + SG++ G PGP G
Sbjct: 126 PGQPGSPGSPGPPGICESCPTGPQNYSPQYDSY-DVKSGVAVGGLAGYPGPAG 177
Score = 30.8 bits (68), Expect = 1.5
Identities = 41/143 (28%), Positives = 51/143 (35%), Gaps = 24/143 (16%)
Query: 152 CGN-SLPEPSSMLTCPQQPHRATSPAAPGLQECPRTGPSQPSMQLPSYPEEGSGLSRGHK 210
C N +P CPQ P T P + P+ P P +P + +
Sbjct: 74 CPNPEIPFGECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPG--IPGRNGDPGIPGQPGS 131
Query: 211 DARPGPPGQEREQVLRACAPQPQH---QVDC------SAVGG----PMAAGEKPPVSRLG 257
PGPPG + +C PQ+ Q D AVGG P AG P G
Sbjct: 132 PGSPGPPG-----ICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPG 186
Query: 258 -SAHQGLPTSAFEGACHALGDPG 279
S H G P S G G+PG
Sbjct: 187 TSGHPGSPGS--PGYQGPPGEPG 207
>gi|56117844 synovial sarcoma translocation, chromosome 18 isoform 2
[Homo sapiens]
Length = 387
Score = 37.7 bits (86), Expect = 0.012
Identities = 39/146 (26%), Positives = 54/146 (36%), Gaps = 11/146 (7%)
Query: 83 GQSVWGAGPPMRGQWGWGAGSPMRGQ-SVWGAGPPMRGQIVWSAGPPRVQGTLV----HC 137
GQ G PPM G+ M GQ + PP +G +G G
Sbjct: 222 GQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQG 281
Query: 138 PTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECPRT----GPSQ--P 191
P ++Q+ P + + PQQ + PG Q P GPSQ P
Sbjct: 282 PPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGP 341
Query: 192 SMQLPSYPEEGSGLSRGHKDARPGPP 217
Q P+YP+ G++ +PGPP
Sbjct: 342 GPQYPNYPQGQGQQYGGYRPTQPGPP 367
Score = 33.5 bits (75), Expect = 0.23
Identities = 41/181 (22%), Positives = 62/181 (34%), Gaps = 29/181 (16%)
Query: 83 GQSVWGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQIVWSAGPPRVQGTLV-HCPTRH 141
G + G PP R M + G GPP P +Q + P +
Sbjct: 89 GMNQSGPPPPPRSH-------NMPSDGMVGGGPPA----------PHMQNQMNGQMPGPN 131
Query: 142 LSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSPAAPGLQECPRTGPSQPSMQLPSYPEE 201
+GPG N L +S + P H + + PS SM + +
Sbjct: 132 HMPMQGPGP---NQLNMTNSSMNMPSSSHGSMGGYNHSV-------PSSQSMPVQNQMTM 181
Query: 202 GSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSAVGGPMAAGEKPPVSRLGSAHQ 261
G G+ RP Q + + P P Q + GG G++PP+ +G +Q
Sbjct: 182 SQGQPMGNYGPRPNMSMQPNQGPMMHQQP-PSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
Query: 262 G 262
G
Sbjct: 241 G 241
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 37.7 bits (86), Expect = 0.012
Identities = 63/240 (26%), Positives = 84/240 (35%), Gaps = 43/240 (17%)
Query: 32 PDVGSVGVGRRVPD--AGSECVGHRAPDAGSVCGGAGPPMRGQWGWGAGSPMRGQSVWGA 89
P V + +RVP A G RA G GG G P+R RG W
Sbjct: 15 PRVQCIRGSQRVPQPPAARSPRGPRAGGGGGDAGGGGAPVR---------RARGGGCWAR 65
Query: 90 GPPMRGQWGWGAGSPMRGQSVWGAGPP---------MRGQIVWSAG---PPRVQGTLVHC 137
+G G G ++ S GA PP +G AG PPR+
Sbjct: 66 AYQDARCFGRGEGGDLQVSSGPGAAPPAEFRASARSAQGSRDVPAGPGFPPRLPRPFTSA 125
Query: 138 PTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSP---AAPGLQECPRTGPSQPSMQ 194
+ ++ R R+ ++LP P CPQ+ S PG PR +
Sbjct: 126 SFSNQTRLR---RRSASALPAPR---LCPQRASPGCSSPGVRGPGGGASPRARGGNAAAA 179
Query: 195 LPSYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSAVGG---PMAAGEKP 251
L + G G SR A R+ L ACA P+ A G + AGE+P
Sbjct: 180 LAARQAAGGGRSRSAFVA-------GRDAAL-ACAQLPRRPRGAGARRGMRRRLGAGERP 231
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 37.7 bits (86), Expect = 0.012
Identities = 63/240 (26%), Positives = 84/240 (35%), Gaps = 43/240 (17%)
Query: 32 PDVGSVGVGRRVPD--AGSECVGHRAPDAGSVCGGAGPPMRGQWGWGAGSPMRGQSVWGA 89
P V + +RVP A G RA G GG G P+R RG W
Sbjct: 15 PRVQCIRGSQRVPQPPAARSPRGPRAGGGGGDAGGGGAPVR---------RARGGGCWAR 65
Query: 90 GPPMRGQWGWGAGSPMRGQSVWGAGPP---------MRGQIVWSAG---PPRVQGTLVHC 137
+G G G ++ S GA PP +G AG PPR+
Sbjct: 66 AYQDARCFGRGEGGDLQVSSGPGAAPPAEFRASARSAQGSRDVPAGPGFPPRLPRPFTSA 125
Query: 138 PTRHLSQRRGPGRQCGNSLPEPSSMLTCPQQPHRATSP---AAPGLQECPRTGPSQPSMQ 194
+ ++ R R+ ++LP P CPQ+ S PG PR +
Sbjct: 126 SFSNQTRLR---RRSASALPAPR---LCPQRASPGCSSPGVRGPGGGASPRARGGNAAAA 179
Query: 195 LPSYPEEGSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSAVGG---PMAAGEKP 251
L + G G SR A R+ L ACA P+ A G + AGE+P
Sbjct: 180 LAARQAAGGGRSRSAFVA-------GRDAAL-ACAQLPRRPRGAGARRGMRRRLGAGERP 231
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,883,001
Number of Sequences: 37866
Number of extensions: 1263033
Number of successful extensions: 6163
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 549
Number of HSP's that attempted gapping in prelim test: 5229
Number of HSP's gapped (non-prelim): 1303
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.