Guide to the Human Genome
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Name: FBXW10 Sequence: fasta or formatted (1051aa) NCBI GI: 110815834
Description:

F-box and WD-40 domain protein 10

Referenced in:

Cullins and SCF Complexes
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         49           2
 C cysteine            2.4         25           1
 D aspartate           4.5         47           3
 E glutamate           5.5         58           3
 F phenylalanine       3.6         38           2
 G glycine             5.2         55           2
 H histidine           2.4         25           1
 I isoleucine          6.1         64           2
 K lysine              8.8         93           3
 L leucine            10.0        105           4
 M methionine          2.3         24           1
 N asparagine          4.9         52           2
 P proline             4.7         49           2
 Q glutamine           5.1         54           2
 R arginine            5.6         59           2
 S serine              8.3         87           2
 T threonine           5.0         53           2
 V valine              6.5         68           2
 W tryptophan          1.8         19           1
 Y tyrosine            2.6         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   F-box and WD-40 domain protein 10 
CDRT1                 0.636   CMT1A duplicated region transcript 1 
LOC100133998          0.350   PREDICTED: similar to CMT1A duplicated region trans...
LOC732391             0.214   PREDICTED: similar to FBXW10 protein 
FBXW7                 0.048   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.048   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.048   F-box and WD repeat domain containing 7 isoform 2 [H...
FBXW11                0.035   F-box and WD repeat domain containing 11 isoform C [...
FBXW11                0.035   F-box and WD repeat domain containing 11 isoform A [...
FBXW11                0.035   F-box and WD repeat domain containing 11 isoform B [...
BTRC                  0.034   beta-transducin repeat containing protein isoform 2 [...
BTRC                  0.034   beta-transducin repeat containing protein isoform 1 ...
WDR5                  0.031   WD repeat domain 5 
WDR5                  0.031   WD repeat domain 5 
PAFAH1B1              0.031   platelet-activating factor acetylhydrolase, isoform I...
WDR5B                 0.031   WD repeat domain 5B 
WDR86                 0.029   WD repeat domain 86 
KATNB1                0.027   katanin p80 subunit B 1 
TAF5                  0.027   TBP-associated factor 5 
TBL3                  0.026   transducin beta-like 3 
TAF5L                 0.025   PCAF associated factor 65 beta isoform a 
WDR69                 0.024   WD repeat domain 69 
SNRNP40               0.024   WD repeat domain 57 (U5 snRNP specific) 
WDR48                 0.023   WD repeat domain 48 
GNB2L1                0.023   guanine nucleotide binding protein (G protein), beta ...
WDR38                 0.022   WD repeat domain 38 
RRP9                  0.022   RNA, U3 small nucleolar interacting protein 2 
TRAF7                 0.021   TNF receptor-associated factor 7 
PLRG1                 0.021   pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [...
GNB1                  0.021   guanine nucleotide-binding protein, beta-1 subunit [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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