Guide to the Human Genome
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Name: RRP9 Sequence: fasta or formatted (475aa) NCBI GI: 4759276
Description:

RNA, U3 small nucleolar interacting protein 2

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         49           3
 C cysteine            2.3         11           2
 D aspartate           4.8         23           2
 E glutamate           8.4         40           7
 F phenylalanine       2.3         11           1
 G glycine             9.3         44           3
 H histidine           3.2         15           1
 I isoleucine          4.4         21           2
 K lysine              6.1         29           2
 L leucine             9.5         45           2
 M methionine          0.8          4           1
 N asparagine          1.5          7           1
 P proline             3.6         17           2
 Q glutamine           4.2         20           2
 R arginine            7.6         36           3
 S serine              9.5         45           3
 T threonine           2.7         13           1
 V valine              6.3         30           2
 W tryptophan          1.9          9           2
 Y tyrosine            1.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA, U3 small nucleolar interacting protein 2 
WDR38                 0.080   WD repeat domain 38 
FBXW7                 0.080   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.080   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.080   F-box and WD repeat domain containing 7 isoform 2 [H...
BTRC                  0.072   beta-transducin repeat containing protein isoform 2 [...
BTRC                  0.072   beta-transducin repeat containing protein isoform 1 ...
PAFAH1B1              0.069   platelet-activating factor acetylhydrolase, isoform I...
WDR5                  0.066   WD repeat domain 5 
WDR5                  0.066   WD repeat domain 5 
WDR86                 0.065   WD repeat domain 86 
TAF5                  0.064   TBP-associated factor 5 
WDR5B                 0.062   WD repeat domain 5B 
TEP1                  0.062   telomerase-associated protein 1 
TAF5L                 0.060   PCAF associated factor 65 beta isoform a 
GNB2L1                0.059   guanine nucleotide binding protein (G protein), beta ...
WDR51B                0.059   WD repeat domain 51B 
GNB1                  0.058   guanine nucleotide-binding protein, beta-1 subunit [...
GNB2                  0.058   guanine nucleotide-binding protein, beta-2 subunit [...
SNRNP40               0.058   WD repeat domain 57 (U5 snRNP specific) 
GNB4                  0.057   guanine nucleotide-binding protein, beta-4 subunit [...
PLRG1                 0.057   pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [...
TBL3                  0.056   transducin beta-like 3 
WDR3                  0.056   WD repeat-containing protein 3 
PLAA                  0.055   phospholipase A2-activating protein 
GNB3                  0.054   guanine nucleotide-binding protein, beta-3 subunit [H...
KATNB1                0.054   katanin p80 subunit B 1 
WDR69                 0.054   WD repeat domain 69 
WDR88                 0.053   PQQ repeat and WD repeat domain containing 
WDR51A                0.053   WD repeat domain 51A isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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