Guide to the Human Genome
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Name: LOC732391 Sequence: fasta or formatted (243aa) NCBI GI: 169210888
Description:

PREDICTED: similar to FBXW10 protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         17           2
 C cysteine            0.8          2           1
 D aspartate           3.3          8           1
 E glutamate           5.8         14           2
 F phenylalanine       3.3          8           1
 G glycine             5.3         13           2
 H histidine           1.2          3           1
 I isoleucine          7.0         17           2
 K lysine              8.2         20           2
 L leucine             8.2         20           2
 M methionine          2.1          5           1
 N asparagine          3.3          8           1
 P proline             8.2         20           2
 Q glutamine           5.8         14           1
 R arginine            7.0         17           1
 S serine              8.6         21           2
 T threonine           6.2         15           1
 V valine              6.2         15           2
 W tryptophan          0.8          2           1
 Y tyrosine            1.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to FBXW10 protein 
FBXW10                0.985   F-box and WD-40 domain protein 10 
PNPLA1                0.015   patatin-like phospholipase domain containing 1 isof...
PNPLA1                0.015   patatin-like phospholipase domain containing 1 isof...
PNPLA1                0.015   patatin-like phospholipase domain containing 1 isof...
MYH4                  0.015   myosin, heavy polypeptide 4, skeletal muscle 
USP4                  0.013   ubiquitin specific protease 4 isoform a 
USP4                  0.013   ubiquitin specific protease 4 isoform b 
MYH1                  0.013   myosin, heavy chain 1, skeletal muscle, adult [Homo...
NHSL1                 0.011   NHS-like 1 
AHNAK2                0.011   AHNAK nucleoprotein 2 
AHNAK                 0.011   AHNAK nucleoprotein isoform 1 
KIAA1755              0.007   hypothetical protein LOC85449 
ZFPM2                 0.007   zinc finger protein, multitype 2 
TEX2                  0.007   testis expressed sequence 2 
MLPH                  0.007   melanophilin isoform 2 
MLPH                  0.007   melanophilin isoform 1 
MICAL2                0.007   microtubule associated monoxygenase, calponin and LIM...
SBF2                  0.007   SET binding factor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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