Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131225 Sequence: fasta or formatted (157aa) NCBI GI: 169171690
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {157aa} PREDICTED: hypothetical protein
alt prot {157aa} PREDICTED: hypothetical protein
alt mRNA {157aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         22           3
 C cysteine            3.8          6           1
 D aspartate           1.3          2           1
 E glutamate           3.8          6           1
 F phenylalanine       1.3          2           1
 G glycine             7.0         11           2
 H histidine           0.6          1           1
 I isoleucine          0.0          0           0
 K lysine              0.6          1           1
 L leucine             5.1          8           2
 M methionine          1.3          2           1
 N asparagine          0.6          1           1
 P proline            23.6         37           3
 Q glutamine           3.2          5           2
 R arginine           19.1         30           2
 S serine              5.1          8           1
 T threonine           4.5          7           1
 V valine              3.2          5           1
 W tryptophan          1.3          2           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131225          1.000   PREDICTED: hypothetical protein 
LOC100131225          1.000   PREDICTED: hypothetical protein 
LOC100131225          0.994   PREDICTED: hypothetical protein 
SAMD1                 0.083   sterile alpha motif domain containing 1 
PRB2                  0.079   proline-rich protein BstNI subfamily 2 
ARHGAP17              0.070   nadrin isoform 1 
ARHGAP17              0.070   nadrin isoform 2 
PRB3                  0.070   proline-rich protein BstNI subfamily 3 precursor [H...
FLJ22184              0.067   PREDICTED: hypothetical protein FLJ22184 
DACT3                 0.067   thymus expressed gene 3-like 
NACA                  0.067   nascent polypeptide-associated complex alpha subuni...
PRR12                 0.067   proline rich 12 
WASL                  0.067   Wiskott-Aldrich syndrome gene-like protein 
LOC100131102          0.067   PREDICTED: hypothetical protein 
LOC100131102          0.067   PREDICTED: hypothetical protein 
KNDC1                 0.067   kinase non-catalytic C-lobe domain (KIND) containin...
WIPF3                 0.063   WAS/WASL interacting protein family, member 3 [Homo...
PRB1                  0.063   proline-rich protein BstNI subfamily 1 isoform 1 pre...
LOC100131109          0.063   PREDICTED: hypothetical protein 
PRB1                  0.063   proline-rich protein BstNI subfamily 1 isoform 2 pre...
SYNJ1                 0.060   synaptojanin 1 isoform a 
SYNJ1                 0.060   synaptojanin 1 isoform b 
FLJ22184              0.060   PREDICTED: hypothetical protein FLJ22184 
LOC100293375          0.060   PREDICTED: hypothetical protein 
FLJ22184              0.060   PREDICTED: hypothetical protein LOC80164 
SYNJ1                 0.060   synaptojanin 1 isoform d 
GLTSCR1               0.060   glioma tumor suppressor candidate region gene 1 [Ho...
NPNT                  0.060   nephronectin 
SYNJ1                 0.060   synaptojanin 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press