Guide to the Human Genome
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Name: NPNT Sequence: fasta or formatted (565aa) NCBI GI: 75709198
Description:

nephronectin

Referenced in:

Epidermal Growth Factor
Kidney
Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         27           3
 C cysteine            6.7         38           2
 D aspartate           5.5         31           2
 E glutamate           3.4         19           2
 F phenylalanine       2.3         13           1
 G glycine            11.0         62           2
 H histidine           3.0         17           1
 I isoleucine          5.0         28           2
 K lysine              5.7         32           2
 L leucine             6.9         39           2
 M methionine          1.4          8           1
 N asparagine          3.2         18           3
 P proline             9.4         53           6
 Q glutamine           4.1         23           1
 R arginine            6.2         35           2
 S serine              5.5         31           2
 T threonine           6.2         35           2
 V valine              4.8         27           2
 W tryptophan          1.9         11           2
 Y tyrosine            3.2         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nephronectin 
EGFL6                 0.322   epidermal growth factor-like protein 6 precursor [Ho...
FBN2                  0.107   fibrillin 2 precursor 
FBN3                  0.099   fibrillin 3 precursor 
FBLN2                 0.096   fibulin 2 isoform b precursor 
FBLN2                 0.096   fibulin 2 isoform a precursor 
MEGF6                 0.096   EGF-like-domain, multiple 3 
VWCE                  0.092   von Willebrand factor C and EGF domains 
FBN1                  0.092   fibrillin 1 precursor 
EFEMP2                0.086   EGF-containing fibulin-like extracellular matrix pr...
FBLN1                 0.086   fibulin 1 isoform C precursor 
FBLN1                 0.086   fibulin 1 isoform B precursor 
FBLN1                 0.086   fibulin 1 isoform A precursor 
FBLN1                 0.086   fibulin 1 isoform D 
LTBP4                 0.081   latent transforming growth factor beta binding prot...
LTBP4                 0.081   latent transforming growth factor beta binding prot...
LTBP4                 0.081   latent transforming growth factor beta binding prot...
CD97                  0.079   CD97 antigen isoform 1 precursor 
EMR2                  0.078   egf-like module containing, mucin-like, hormone rece...
EMR2                  0.078   egf-like module containing, mucin-like, hormone rece...
MATN2                 0.077   matrilin 2 isoform b precursor 
MATN2                 0.077   matrilin 2 isoform a precursor 
LTBP3                 0.076   latent transforming growth factor beta binding prot...
LTBP3                 0.076   latent transforming growth factor beta binding prote...
SCUBE1                0.074   signal peptide, CUB domain, EGF-like 1 
FBLN5                 0.074   fibulin 5 precursor 
EFEMP1                0.072   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.072   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.072   EGF-containing fibulin-like extracellular matrix prot...
CD93                  0.071   CD93 antigen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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