Guide to the Human Genome
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Name: LOC100131109 Sequence: fasta or formatted (136aa) NCBI GI: 169210797
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {136aa} PREDICTED: hypothetical protein
alt prot {136aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         16           2
 C cysteine            5.1          7           1
 D aspartate           0.7          1           1
 E glutamate           3.7          5           2
 F phenylalanine       5.1          7           2
 G glycine             8.8         12           1
 H histidine           1.5          2           1
 I isoleucine          1.5          2           1
 K lysine              1.5          2           1
 L leucine             5.1          7           1
 M methionine          1.5          2           1
 N asparagine          1.5          2           1
 P proline            15.4         21           2
 Q glutamine           3.7          5           1
 R arginine           12.5         17           2
 S serine             11.0         15           2
 T threonine           2.9          4           1
 V valine              5.1          7           1
 W tryptophan          1.5          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131109          0.992   PREDICTED: hypothetical protein 
LOC100131109          0.992   PREDICTED: hypothetical protein 
LOC100131225          0.075   PREDICTED: hypothetical protein 
LOC100131225          0.075   PREDICTED: hypothetical protein 
LOC100131225          0.075   PREDICTED: hypothetical protein 
LOC100131225          0.075   PREDICTED: hypothetical protein 
LOC645321             0.064   PREDICTED: hypothetical protein 
LOC645321             0.064   PREDICTED: hypothetical protein 
LOC728351             0.053   PREDICTED: hypothetical protein 
LOC728351             0.053   PREDICTED: hypothetical protein 
SH3BP1                0.049   SH3-domain binding protein 1 
LOC730036             0.049   PREDICTED: hypothetical protein 
TAF4                  0.049   TBP-associated factor 4 
FOXE3                 0.049   forkhead box E3 
ZFP36                 0.045   zinc finger protein 36, C3H type, homolog 
LOC100132234          0.045   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.045   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.045   PREDICTED: hypothetical protein LOC100132234 
COL9A1                0.045   alpha 1 type IX collagen isoform 1 precursor 
COL9A1                0.045   alpha 1 type IX collagen isoform 2 precursor 
PSD                   0.045   pleckstrin and Sec7 domain containing 
SYNJ1                 0.042   synaptojanin 1 isoform c 
SYNJ1                 0.042   synaptojanin 1 isoform a 
SYNJ1                 0.042   synaptojanin 1 isoform b 
PPP1R9B               0.042   protein phosphatase 1, regulatory subunit 9B 
BAI2                  0.042   brain-specific angiogenesis inhibitor 2 
SAMD1                 0.042   sterile alpha motif domain containing 1 
COL4A4                0.038   alpha 4 type IV collagen precursor 
SF3B4                 0.038   splicing factor 3b, subunit 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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