Guide to the Human Genome
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Name: LOC100133889 Sequence: fasta or formatted (167aa) NCBI GI: 169169677
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         23           2
 C cysteine            0.6          1           1
 D aspartate           1.2          2           1
 E glutamate           3.0          5           2
 F phenylalanine       1.2          2           1
 G glycine            15.0         25           2
 H histidine           1.8          3           1
 I isoleucine          0.0          0           0
 K lysine              3.0          5           1
 L leucine             8.4         14           2
 M methionine          1.2          2           1
 N asparagine          1.8          3           1
 P proline            18.6         31           2
 Q glutamine           2.4          4           1
 R arginine           10.8         18           1
 S serine              6.0         10           2
 T threonine           3.0          5           1
 V valine              5.4          9           1
 W tryptophan          2.4          4           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289721          0.048   PREDICTED: hypothetical protein XP_002347280 
SMARCC2               0.045   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.045   SWI/SNF-related matrix-associated actin-dependent re...
CASKIN2               0.042   cask-interacting protein 2 isoform b 
CASKIN2               0.042   cask-interacting protein 2 isoform a 
CABIN1                0.042   calcineurin binding protein 1 
NACA                  0.042   nascent polypeptide-associated complex alpha subuni...
PCLO                  0.039   piccolo isoform 2 
PCLO                  0.039   piccolo isoform 1 
SMARCC2               0.039   SWI/SNF-related matrix-associated actin-dependent r...
MICALL2               0.039   MICAL-like 2 isoform 1 
HCN2                  0.036   hyperpolarization activated cyclic nucleotide-gated...
WIPF3                 0.036   WAS/WASL interacting protein family, member 3 [Homo...
LARP1                 0.036   la related protein isoform 2 
LARP1                 0.036   la related protein isoform 1 
MCTP1                 0.036   multiple C2 domains, transmembrane 1 isoform L [Hom...
PRB3                  0.036   proline-rich protein BstNI subfamily 3 precursor [H...
WDR33                 0.036   WD repeat domain 33 isoform 1 
SYNJ1                 0.033   synaptojanin 1 isoform a 
SYNJ1                 0.033   synaptojanin 1 isoform b 
OTUD1                 0.033   OTU domain containing 1 
FLJ22184              0.033   PREDICTED: hypothetical protein FLJ22184 
LOC100292830          0.033   PREDICTED: hypothetical protein 
LOC100291878          0.033   PREDICTED: similar to RIKEN cDNA C230030N03 
LOC100290397          0.033   PREDICTED: hypothetical protein XP_002348309, parti...
FLJ22184              0.033   PREDICTED: hypothetical protein FLJ22184 
KRTAP4-6              0.033   PREDICTED: keratin associated protein 4.6 
FLJ22184              0.033   PREDICTED: hypothetical protein LOC80164 
MAGI2                 0.033   membrane associated guanylate kinase, WW and PDZ dom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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