Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293351 Sequence: fasta or formatted (486aa) NCBI GI: 239755816
Description:

PREDICTED: hypothetical protein isoform 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {486aa} PREDICTED: hypothetical protein isoform 3
alt mRNA {486aa} PREDICTED: hypothetical protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         40           2
 C cysteine            6.0         29           2
 D aspartate           3.5         17           2
 E glutamate          10.5         51           3
 F phenylalanine       2.3         11           1
 G glycine             7.2         35           2
 H histidine           0.8          4           1
 I isoleucine          4.5         22           2
 K lysine              4.9         24           3
 L leucine             8.4         41           2
 M methionine          1.2          6           1
 N asparagine          4.3         21           1
 P proline             2.5         12           2
 Q glutamine           4.3         21           2
 R arginine            7.6         37           2
 S serine              8.6         42           3
 T threonine           4.3         21           2
 V valine              7.6         37           3
 W tryptophan          0.2          1           1
 Y tyrosine            2.9         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 1 
LOC100293351          1.000   PREDICTED: hypothetical protein isoform 2 
LOC100293351          1.000   PREDICTED: hypothetical protein isoform 3 
KRT86                 1.000   keratin 86 
KRT81                 0.919   keratin, hair, basic, 1 
KRT83                 0.893   keratin 83 
KRT85                 0.805   keratin 85 
KRT84                 0.547   keratin, hair, basic, 4 
KRT82                 0.535   keratin 82 
KRT5                  0.433   keratin 5 
KRT6A                 0.424   keratin 6A 
KRT6C                 0.421   keratin 6C 
KRT75                 0.420   keratin 75 
KRT6B                 0.419   keratin 6B 
KRT8                  0.411   keratin 8 
KRT3                  0.404   keratin 3 
KRT7                  0.403   keratin 7 
KRT4                  0.399   keratin 4 
KRT71                 0.397   keratin 71 
KRT73                 0.391   keratin 73 
KRT1                  0.389   keratin 1 
KRT76                 0.387   keratin 76 
KRT72                 0.386   keratin 72 isoform 1 
KRT72                 0.386   keratin 72 isoform 1 
KRT79                 0.384   keratin 6L 
KRT2                  0.375   keratin 2 
KRT74                 0.373   keratin 6 irs4 
KRT77                 0.345   keratin 77 
KRT78                 0.338   keratin 5b 
KRT72                 0.327   keratin 72 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press