Search of human proteins with 169168589

Search of human proteins with 169168589

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169168589 PREDICTED: similar to MHC class II antigen [Homo
sapiens]
         (140 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169168589 PREDICTED: similar to MHC class II antigen [Homo sa...   295   1e-80
gi|52630344 major histocompatibility complex, class II, DR beta ...   257   2e-69
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...   206   5e-54
gi|155030211 major histocompatibility complex, class II, DR beta...   205   1e-53
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...   203   4e-53
gi|239740857 PREDICTED: similar to major histocompatibility comp...   202   7e-53
gi|18641375 major histocompatibility complex, class II, DR beta ...   199   5e-52
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...   197   2e-51
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...   197   2e-51
gi|239740853 PREDICTED: similar to major histocompatibility comp...   196   5e-51
gi|239758090 PREDICTED: major histocompatibility complex, class ...   191   1e-49
gi|17986005 major histocompatibility complex, class II, DR beta ...   189   5e-49
gi|239740859 PREDICTED: similar to major histocompatibility comp...   186   7e-48
gi|239740855 PREDICTED: similar to major histocompatibility comp...   181   2e-46
gi|169217452 PREDICTED: similar to HLA class II histocompatibili...   151   1e-37
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...   146   5e-36
gi|239740920 PREDICTED: similar to major histocompatibility comp...   137   2e-33
gi|239740918 PREDICTED: similar to major histocompatibility comp...   137   2e-33
gi|169168591 PREDICTED: similar to major histocompatibility comp...   136   5e-33
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...   134   3e-32
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...   134   3e-32
gi|150418002 major histocompatibility complex, class II, DQ beta...   132   1e-31
gi|239748788 PREDICTED: similar to major histocompatibility comp...   128   2e-30
gi|239758095 PREDICTED: similar to major histocompatibility comp...   127   2e-30
gi|239740863 PREDICTED: similar to major histocompatibility comp...   127   2e-30
gi|239740749 PREDICTED: similar to major histocompatibility comp...   127   2e-30
gi|239513955 PREDICTED: similar to major histocompatibility comp...   127   2e-30
gi|24797076 major histocompatibility complex, class II, DP beta ...   118   2e-27
gi|4504403 major histocompatibility complex, class II, DO beta p...   115   9e-27
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]                30   0.84 

>gi|169168589 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 140

 Score =  295 bits (754), Expect = 1e-80
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
           MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI
Sbjct: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60

Query: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
           YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV
Sbjct: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120

Query: 121 QRRGCIFLHSRSDCETNFLN 140
           QRRGCIFLHSRSDCETNFLN
Sbjct: 121 QRRGCIFLHSRSDCETNFLN 140


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score =  257 bits (657), Expect = 2e-69
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
           MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI
Sbjct: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60

Query: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
           YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV
Sbjct: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120

Query: 121 QRR 123
           QRR
Sbjct: 121 QRR 123


>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score =  206 bits (524), Expect = 5e-54
 Identities = 99/123 (80%), Positives = 110/123 (89%)

Query: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
           MVCL+LPGGSCMA LTVTL VLSSPLALAGDT+PRFLE+ K ECHF NGTERV  L RY 
Sbjct: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60

Query: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
           +NQEE  R++SD+GE++AVTELGRPDAEYWNSQKDLLE+RRA VDTYCR+NYGV ESFTV
Sbjct: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120

Query: 121 QRR 123
           QRR
Sbjct: 121 QRR 123


>gi|155030211 major histocompatibility complex, class II, DR beta 1
           precursor [Homo sapiens]
          Length = 266

 Score =  205 bits (521), Expect = 1e-53
 Identities = 99/123 (80%), Positives = 109/123 (88%)

Query: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
           MVCLKLPGGSCM ALTVTL VLSSPLAL+GDT+PRFL Q K ECHF NGTERV  L RY 
Sbjct: 1   MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF 60

Query: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
           YNQEE  R++SD+GE++AVTELGRPDAEYWNSQKD+LE+ RA VDTYCR+NYGVVESFTV
Sbjct: 61  YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV 120

Query: 121 QRR 123
           QRR
Sbjct: 121 QRR 123


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score =  203 bits (516), Expect = 4e-53
 Identities = 102/123 (82%), Positives = 108/123 (87%)

Query: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
           MVCLKLPGGSCMAALTVTL VLSSPLALAGDTQPRFL+Q K ECHF NGTERV  L R I
Sbjct: 1   MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLKQDKFECHFFNGTERVRYLHRGI 60

Query: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
           YNQEE  R++SD+GEY+AVTELGRP AE WNSQKD LERRRAEVDT CR+NYGV ESFTV
Sbjct: 61  YNQEENVRFDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTV 120

Query: 121 QRR 123
           QRR
Sbjct: 121 QRR 123


>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  202 bits (514), Expect = 7e-53
 Identities = 96/123 (78%), Positives = 108/123 (87%)

Query: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
           MVCL+LPGGSCMA LTVTL VLSSPLALAGDT+PRFLE +  ECHF NGTERV  L RY 
Sbjct: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60

Query: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
           +NQEE  R++SD+GE++AVTELGRPDAEYWNSQKDLLE++R  VD YCR+NYGVVESFTV
Sbjct: 61  HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120

Query: 121 QRR 123
           QRR
Sbjct: 121 QRR 123


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score =  199 bits (507), Expect = 5e-52
 Identities = 100/123 (81%), Positives = 107/123 (86%)

Query: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
           MVCLKLPGGS MA LTVTL VLSSPLALAGDT+PRFL+Q K ECHF NGTERV  L R I
Sbjct: 1   MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60

Query: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
           YNQEE  R++SD+GEY+AVTELGRPDAEYWNSQKD LE RRA VDTYCR+NYGV ESFTV
Sbjct: 61  YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120

Query: 121 QRR 123
           QRR
Sbjct: 121 QRR 123


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  197 bits (501), Expect = 2e-51
 Identities = 97/123 (78%), Positives = 106/123 (86%)

Query: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
           MVCLKLPGGSCMAALTVTL VLSSPLALAGDTQPRFL Q K +CHF NGTERV  L R  
Sbjct: 1   MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF 60

Query: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
           YNQEE+ R++SD+GEY+AVTELGRP AE WNSQKD+LE RR +VDT CR+NYGV ESFTV
Sbjct: 61  YNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTV 120

Query: 121 QRR 123
           QRR
Sbjct: 121 QRR 123


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  197 bits (501), Expect = 2e-51
 Identities = 97/123 (78%), Positives = 106/123 (86%)

Query: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
           MVCLKLPGGSCMAALTVTL VLSSPLALAGDTQPRFL Q K +CHF NGTERV  L R  
Sbjct: 1   MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF 60

Query: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
           YNQEE+ R++SD+GEY+AVTELGRP AE WNSQKD+LE RR +VDT CR+NYGV ESFTV
Sbjct: 61  YNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTV 120

Query: 121 QRR 123
           QRR
Sbjct: 121 QRR 123


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  196 bits (498), Expect = 5e-51
 Identities = 95/123 (77%), Positives = 107/123 (86%)

Query: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
           MVCLKLPGGS +AALTVTL VLSS LA AGDT+PRFLE  K ECHF NGTERV  L R+ 
Sbjct: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERHF 60

Query: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
           +NQEEYAR++SD+GEY+AV ELGRPDAEYWNSQKDLLE++R +VD YCR+NYGV ESFTV
Sbjct: 61  HNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTV 120

Query: 121 QRR 123
           QRR
Sbjct: 121 QRR 123


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score =  191 bits (486), Expect = 1e-49
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 35  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 94
           RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK
Sbjct: 47  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106

Query: 95  DLLERRRAEVDTYCRYNYGVVESFTVQRR 123
           DLLERRRAEVDTYCRYNYGVVESFTVQRR
Sbjct: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRR 135


>gi|17986005 major histocompatibility complex, class II, DR beta 3
           precursor [Homo sapiens]
          Length = 266

 Score =  189 bits (481), Expect = 5e-49
 Identities = 93/123 (75%), Positives = 104/123 (84%)

Query: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
           MVCLKLPGGS +AALTVTL VLSS LA AGDT+PRFLE  K ECHF NGTERV  L RY 
Sbjct: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSECHFFNGTERVRYLDRYF 60

Query: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
           +NQEE+ R++SD+GEY+AVTELGRP AE WNSQKDLLE++R  VD YCR+NYGV ESFTV
Sbjct: 61  HNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTV 120

Query: 121 QRR 123
           QRR
Sbjct: 121 QRR 123


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  186 bits (471), Expect = 7e-48
 Identities = 92/124 (74%), Positives = 104/124 (83%), Gaps = 1/124 (0%)

Query: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRF-LEQAKCECHFLNGTERVWNLIRY 59
           MVCL+LPGGSCMA LTVTL VLSSPLALAGDT+ +  L     ECHF NGTERV  L RY
Sbjct: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60

Query: 60  IYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFT 119
            +NQEE  R++SD+GE++AVTELGRPDAEYWNSQKDLLE++R  VD YCR+NYGVVESFT
Sbjct: 61  FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120

Query: 120 VQRR 123
           VQRR
Sbjct: 121 VQRR 124


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  181 bits (458), Expect = 2e-46
 Identities = 91/124 (73%), Positives = 104/124 (83%), Gaps = 1/124 (0%)

Query: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRF-LEQAKCECHFLNGTERVWNLIRY 59
           MVCLKLPGGS +AALTVTL VLSS LA AGDT+ +  L   K ECHF NGTERV  L R+
Sbjct: 1   MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60

Query: 60  IYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFT 119
            +NQEEYAR++SD+GEY+AV ELGRPDAEYWNSQKDLLE++R +VD YCR+NYGV ESFT
Sbjct: 61  FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120

Query: 120 VQRR 123
           VQRR
Sbjct: 121 VQRR 124


>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-4 beta chain, partial [Homo sapiens]
          Length = 223

 Score =  151 bits (382), Expect = 1e-37
 Identities = 71/89 (79%), Positives = 79/89 (88%)

Query: 35  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 94
           RFLEQ K ECHF NGTERV  L RY Y+QEEY R++SD+GEY+AVTELGRPDAEYWNSQK
Sbjct: 47  RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106

Query: 95  DLLERRRAEVDTYCRYNYGVVESFTVQRR 123
           DLLE++RA VDTYCR+NYGV ESFTVQRR
Sbjct: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRR 135


>gi|239758092 PREDICTED: similar to HLA class II
          histocompatibility antigen, DRB1-7 beta chain [Homo
          sapiens]
          Length = 253

 Score =  146 bits (369), Expect = 5e-36
 Identities = 74/97 (76%), Positives = 80/97 (82%)

Query: 1  MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
          MVCLKLPGGSCMAALTVTL VLSSPLALAGDTQPRFL Q K +CHF NGTERV  L R  
Sbjct: 1  MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF 60

Query: 61 YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLL 97
          YNQEE+ R++SD+GEY+AVTELGRP AE    Q DLL
Sbjct: 61 YNQEEFVRFDSDVGEYRAVTELGRPVAEQKTKQGDLL 97


>gi|239740920 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
          Length = 261

 Score =  137 bits (346), Expect = 2e-33
 Identities = 67/120 (55%), Positives = 90/120 (75%)

Query: 4   LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ 63
           L++PGG  +A +T+ L +LS+P+A   D+   F+ Q K  C+F NGTERV  + RYIYN+
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66

Query: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123
           EEYAR++SD+G Y+AVT LG P AEYWNSQK++LER RAE+DT CR+NY +    T+QRR
Sbjct: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126


>gi|239740918 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
          Length = 281

 Score =  137 bits (346), Expect = 2e-33
 Identities = 67/120 (55%), Positives = 90/120 (75%)

Query: 4   LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ 63
           L++PGG  +A +T+ L +LS+P+A   D+   F+ Q K  C+F NGTERV  + RYIYN+
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66

Query: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123
           EEYAR++SD+G Y+AVT LG P AEYWNSQK++LER RAE+DT CR+NY +    T+QRR
Sbjct: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126


>gi|169168591 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 1 [Homo sapiens]
          Length = 261

 Score =  136 bits (343), Expect = 5e-33
 Identities = 67/120 (55%), Positives = 89/120 (74%)

Query: 4   LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ 63
           L++PGG  +A +T+ L +LS+P+A   D+   F+ Q K  C+F NGTERV  + RYIYN+
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQFKGMCYFTNGTERVRGVTRYIYNR 66

Query: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123
           EEYAR++SD+G Y+AVT LG P AEYWNSQK++LER RA VDT CR+NY +    T+QRR
Sbjct: 67  EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRASVDTVCRHNYQLELRTTLQRR 126


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  134 bits (336), Expect = 3e-32
 Identities = 64/89 (71%), Positives = 73/89 (82%)

Query: 35  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 94
           RFL Q K +CHF NGTERV  L R  YNQEE+ R++SD+GEY+AVTELGRP AE WNSQK
Sbjct: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92

Query: 95  DLLERRRAEVDTYCRYNYGVVESFTVQRR 123
           D+LE RR +VDT CR+NYGV ESFTVQRR
Sbjct: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRR 121


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  134 bits (336), Expect = 3e-32
 Identities = 64/89 (71%), Positives = 73/89 (82%)

Query: 35  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 94
           RFL Q K +CHF NGTERV  L R  YNQEE+ R++SD+GEY+AVTELGRP AE WNSQK
Sbjct: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92

Query: 95  DLLERRRAEVDTYCRYNYGVVESFTVQRR 123
           D+LE RR +VDT CR+NYGV ESFTVQRR
Sbjct: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRR 121


>gi|150418002 major histocompatibility complex, class II, DQ beta 1
           precursor [Homo sapiens]
          Length = 261

 Score =  132 bits (331), Expect = 1e-31
 Identities = 67/120 (55%), Positives = 87/120 (72%)

Query: 4   LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ 63
           L++PG   +A +T+ L +LSS LA   D+   F+ Q K  C+F NGTERV  + RYIYN+
Sbjct: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66

Query: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123
           EEYAR++SD+G Y+AVT  GRPDAEYWNSQK++LE  RAE+DT CR+NY V     +QRR
Sbjct: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126


>gi|239748788 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 2 [Homo sapiens]
          Length = 281

 Score =  128 bits (321), Expect = 2e-30
 Identities = 64/120 (53%), Positives = 87/120 (72%)

Query: 4   LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ 63
           L++PGG  +A +T+ L +LS+P+A   D+   F+ Q K  C+F NGTERV  + R IYN+
Sbjct: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66

Query: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123
           EE  R++SD+GE++AVT LG P AEYWNSQKD+LER+RA VD  CR+NY +    T+QRR
Sbjct: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  127 bits (320), Expect = 2e-30
 Identities = 64/120 (53%), Positives = 87/120 (72%)

Query: 4   LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ 63
           L++PGG   A +T+ L++LS+P+A   D+   F+ Q K  C+F NGTERV  + R IYN+
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66

Query: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123
           EE  R++SD+GE++AVT LG P AEYWNSQKD+LER+RA VD  CR+NY +    T+QRR
Sbjct: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126


>gi|239740863 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  127 bits (320), Expect = 2e-30
 Identities = 64/120 (53%), Positives = 87/120 (72%)

Query: 4   LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ 63
           L++PGG   A +T+ L++LS+P+A   D+   F+ Q K  C+F NGTERV  + R IYN+
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66

Query: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123
           EE  R++SD+GE++AVT LG P AEYWNSQKD+LER+RA VD  CR+NY +    T+QRR
Sbjct: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  127 bits (320), Expect = 2e-30
 Identities = 64/120 (53%), Positives = 87/120 (72%)

Query: 4   LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ 63
           L++PGG   A +T+ L++LS+P+A   D+   F+ Q K  C+F NGTERV  + R IYN+
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66

Query: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123
           EE  R++SD+GE++AVT LG P AEYWNSQKD+LER+RA VD  CR+NY +    T+QRR
Sbjct: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126


>gi|239513955 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  127 bits (320), Expect = 2e-30
 Identities = 64/120 (53%), Positives = 87/120 (72%)

Query: 4   LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ 63
           L++PGG   A +T+ L++LS+P+A   D+   F+ Q K  C+F NGTERV  + R IYN+
Sbjct: 7   LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66

Query: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123
           EE  R++SD+GE++AVT LG P AEYWNSQKD+LER+RA VD  CR+NY +    T+QRR
Sbjct: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126


>gi|24797076 major histocompatibility complex, class II, DP beta 1
           precursor [Homo sapiens]
          Length = 258

 Score =  118 bits (295), Expect = 2e-27
 Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 2/123 (1%)

Query: 1   MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
           M+ L++       ALT  L VL + +     T   +L Q + EC+  NGT+R   L RYI
Sbjct: 1   MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYLFQGRQECYAFNGTQRF--LERYI 58

Query: 61  YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
           YN+EE+AR++SD+GE++AVTELGRP AEYWNSQKD+LE +RA  D  CR+NY +    T+
Sbjct: 59  YNREEFARFDSDVGEFRAVTELGRPAAEYWNSQKDILEEKRAVPDRMCRHNYELGGPMTL 118

Query: 121 QRR 123
           QRR
Sbjct: 119 QRR 121


>gi|4504403 major histocompatibility complex, class II, DO beta
           precursor [Homo sapiens]
          Length = 273

 Score =  115 bits (289), Expect = 9e-27
 Identities = 56/112 (50%), Positives = 78/112 (69%)

Query: 12  MAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNS 71
           + AL V LT L S +    D+   F+ QAK +C+F NGTE+V  ++R+I+N EEY R++S
Sbjct: 9   VVALLVNLTRLDSSMTQGTDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFDS 68

Query: 72  DLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123
           D+G + A+T+LG+PDAE WNS+ DLLER R  VD  CR+NY +   FTV R+
Sbjct: 69  DVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRK 120


>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
          Length = 2303

 Score = 29.6 bits (65), Expect = 0.84
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLE--RRRAEVDTYCRYNYGVV--ESFT 119
           EEY R  ++LG  QAV EL + D E     +D L    RR    T     +G V  ++  
Sbjct: 425 EEYRRAMNELGGLQAVAELLQVDYEMHKMTRDPLNLALRRYAGMTLTNLTFGDVANKATL 484

Query: 120 VQRRGCI 126
             RRGC+
Sbjct: 485 CARRGCM 491


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,528,346
Number of Sequences: 37866
Number of extensions: 216320
Number of successful extensions: 463
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 57
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.