Guide to the Human Genome
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Name: EFCAB9 Sequence: fasta or formatted (243aa) NCBI GI: 169168130
Description:

PREDICTED: EF-hand calcium binding domain 9

Not currently referenced in the text

Other entries for this name:
alt mRNA {243aa} PREDICTED: EF-hand calcium binding domain 9
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3          8           1
 C cysteine            2.1          5           1
 D aspartate           8.2         20           2
 E glutamate           5.3         13           2
 F phenylalanine       7.0         17           1
 G glycine             3.3          8           1
 H histidine           3.7          9           2
 I isoleucine          7.0         17           2
 K lysine              9.1         22           2
 L leucine            13.6         33           2
 M methionine          2.5          6           1
 N asparagine          4.9         12           1
 P proline             0.8          2           1
 Q glutamine           4.9         12           2
 R arginine            5.3         13           1
 S serine              4.1         10           1
 T threonine           4.1         10           2
 V valine              3.7          9           1
 W tryptophan          1.2          3           1
 Y tyrosine            5.8         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: EF-hand calcium binding domain 9 
EFCAB9                1.000   PREDICTED: EF-hand calcium binding domain 9 
CALM3                 0.027   calmodulin 3 
CALM2                 0.027   calmodulin 2 
CABP1                 0.027   calcium binding protein 1 isoform 3 
CABP1                 0.027   calcium binding protein 1 isoform 2 
CABP1                 0.027   calcium binding protein 1 isoform 1 
CALM1                 0.027   calmodulin 1 
CETN3                 0.025   centrin 3 
CALML5                0.021   calmodulin-like 5 
HPCA                  0.021   hippocalcin 
CETN2                 0.021   caltractin 
CALML3                0.019   calmodulin-like 3 
TNNC2                 0.019   fast skeletal muscle troponin C 
CABP5                 0.019   calcium binding protein 5 
CABP2                 0.019   calcium binding protein 2 isoform 2 
CABP2                 0.019   calcium binding protein 2 isoform 1 
CBARA1                0.017   calcium binding atopy-related autoantigen 1 
NINL                  0.017   ninein-like 
TNNC1                 0.015   troponin C, slow 
HPCAL1                0.013   hippocalcin-like 1 
HPCAL1                0.013   hippocalcin-like 1 
CAPSL                 0.010   calcyphosine-like 
CAPSL                 0.010   calcyphosine-like 
EFCAB4B               0.010   EF-hand calcium binding domain 4B isoform c 
EFCAB4B               0.010   EF-hand calcium binding domain 4B isoform b 
EFCAB4B               0.010   EF-hand calcium binding domain 4B isoform a 
NCALD                 0.010   neurocalcin delta 
NCALD                 0.010   neurocalcin delta 
NCALD                 0.010   neurocalcin delta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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