Guide to the Human Genome
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Name: EFCAB4B Sequence: fasta or formatted (395aa) NCBI GI: 14249254
Description:

EF-hand calcium binding domain 4B isoform c

Not currently referenced in the text

Other entries for this name:
alt prot {731aa} EF-hand calcium binding domain 4B isoform a
alt prot {462aa} EF-hand calcium binding domain 4B isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         24           2
 C cysteine            1.8          7           1
 D aspartate           5.6         22           1
 E glutamate          14.2         56           2
 F phenylalanine       3.8         15           3
 G glycine             6.1         24           2
 H histidine           3.0         12           2
 I isoleucine          1.5          6           2
 K lysine              7.3         29           2
 L leucine            13.2         52           2
 M methionine          2.0          8           1
 N asparagine          1.8          7           2
 P proline             3.0         12           2
 Q glutamine          10.9         43           3
 R arginine            5.6         22           1
 S serine              5.1         20           1
 T threonine           3.8         15           2
 V valine              3.3         13           2
 W tryptophan          0.8          3           1
 Y tyrosine            1.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   EF-hand calcium binding domain 4B isoform c 
EFCAB4B               0.937   EF-hand calcium binding domain 4B isoform b 
EFCAB4B               0.937   EF-hand calcium binding domain 4B isoform a 
EFCAB4A               0.153   EF-hand calcium binding domain 4A 
RASEF                 0.082   RAS and EF-hand domain containing 
LOC400352             0.054   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.054   PREDICTED: similar to Putative golgin subfamily A m...
TCHH                  0.052   trichohyalin 
CCDC147               0.052   coiled-coil domain containing 147 
LOC100133758          0.051   PREDICTED: hypothetical protein, partial 
MYH10                 0.051   myosin, heavy polypeptide 10, non-muscle 
MYO18A                0.051   myosin 18A isoform b 
MYO18A                0.051   myosin 18A isoform a 
MYH11                 0.046   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.046   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.046   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.046   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
GOLGA4                0.046   golgi autoantigen, golgin subfamily a, 4 
HMMR                  0.044   hyaluronan-mediated motility receptor isoform d [Ho...
HMMR                  0.044   hyaluronan-mediated motility receptor isoform a [Ho...
HMMR                  0.044   hyaluronan-mediated motility receptor isoform c [Ho...
HMMR                  0.044   hyaluronan-mediated motility receptor isoform b [Ho...
CGN                   0.044   cingulin 
MYH9                  0.043   myosin, heavy polypeptide 9, non-muscle 
EEA1                  0.043   early endosome antigen 1, 162kD 
MYH7B                 0.043   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
CLIP1                 0.042   restin isoform b 
CLIP1                 0.042   restin isoform a 
CDC42BPA              0.042   CDC42-binding protein kinase alpha isoform B 
DIAPH1                0.042   diaphanous 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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