Guide to the Human Genome
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Name: HPCAL1 Sequence: fasta or formatted (193aa) NCBI GI: 19913443
Description:

hippocalcin-like 1

Referenced in:

Neurons

Other entries for this name:
alt mRNA [193aa] hippocalcin-like 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          8           1
 C cysteine            1.0          2           1
 D aspartate           8.3         16           1
 E glutamate           8.3         16           2
 F phenylalanine       7.3         14           2
 G glycine             5.7         11           1
 H histidine           1.6          3           1
 I isoleucine          5.2         10           2
 K lysine              8.3         16           2
 L leucine             7.8         15           2
 M methionine          3.6          7           1
 N asparagine          3.6          7           2
 P proline             3.6          7           1
 Q glutamine           4.1          8           1
 R arginine            5.2         10           1
 S serine              8.3         16           2
 T threonine           5.7         11           1
 V valine              4.1          8           1
 W tryptophan          1.0          2           1
 Y tyrosine            3.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hippocalcin-like 1 
HPCAL1                1.000   hippocalcin-like 1 
HPCA                  0.935   hippocalcin 
NCALD                 0.927   neurocalcin delta 
NCALD                 0.927   neurocalcin delta 
NCALD                 0.927   neurocalcin delta 
NCALD                 0.927   neurocalcin delta 
NCALD                 0.927   neurocalcin delta 
NCALD                 0.927   neurocalcin delta 
NCALD                 0.927   neurocalcin delta 
NCALD                 0.927   neurocalcin delta 
VSNL1                 0.683   visinin-like 1 
HPCAL4                0.667   hippocalcin-like protein 4 
FREQ                  0.593   frequenin homolog isoform 1 
FREQ                  0.520   frequenin homolog isoform 2 
RCVRN                 0.504   recoverin 
KCNIP1                0.398   Kv channel interacting protein 1 isoform 3 
KCNIP1                0.398   Kv channel interacting protein 1 isoform 1 
KCNIP1                0.398   Kv channel interacting protein 1 isoform 2 
KCNIP2                0.382   Kv channel interacting protein 2 isoform 5 
KCNIP2                0.382   Kv channel interacting protein 2 isoform 6 
KCNIP2                0.382   Kv channel interacting protein 2 isoform 3 
KCNIP2                0.382   Kv channel interacting protein 2 isoform 1 
KCNIP2                0.382   Kv channel interacting protein 2 isoform 2 
KCNIP3                0.374   Kv channel interacting protein 3 isoform 2 
KCNIP3                0.374   Kv channel interacting protein 3 isoform 1 
KCNIP2                0.366   Kv channel interacting protein 2 isoform 4 
KCNIP4                0.366   Kv channel interacting protein 4 isoform 3 
KCNIP4                0.366   Kv channel interacting protein 4 isoform 5 
KCNIP4                0.366   Kv channel interacting protein 4 isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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