Guide to the Human Genome
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Name: EFCAB4B Sequence: fasta or formatted (731aa) NCBI GI: 222418791
Description:

EF-hand calcium binding domain 4B isoform a

Not currently referenced in the text

Other entries for this name:
alt prot {395aa} EF-hand calcium binding domain 4B isoform c
alt prot {462aa} EF-hand calcium binding domain 4B isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         43           2
 C cysteine            1.9         14           2
 D aspartate           5.5         40           1
 E glutamate          12.4         91           5
 F phenylalanine       3.8         28           3
 G glycine             6.8         50           2
 H histidine           2.1         15           2
 I isoleucine          2.6         19           2
 K lysine              7.1         52           3
 L leucine            11.2         82           3
 M methionine          1.4         10           1
 N asparagine          2.5         18           2
 P proline             4.2         31           2
 Q glutamine           8.2         60           3
 R arginine            6.6         48           2
 S serine              6.6         48           2
 T threonine           4.1         30           2
 V valine              4.7         34           2
 W tryptophan          0.7          5           1
 Y tyrosine            1.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   EF-hand calcium binding domain 4B isoform a 
EFCAB4B               0.569   EF-hand calcium binding domain 4B isoform b 
EFCAB4B               0.500   EF-hand calcium binding domain 4B isoform c 
RASEF                 0.153   RAS and EF-hand domain containing 
RAB3A                 0.091   RAB3A, member RAS oncogene family 
RAB13                 0.088   RAB13, member RAS oncogene family 
RAB30                 0.087   RAB30, member RAS oncogene family 
RAB3B                 0.087   RAB3B, member RAS oncogene family 
LOC100131294          0.087   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.087   PREDICTED: similar to hCG24991 
LOC100131294          0.087   PREDICTED: similar to hCG24991 
RAB8B                 0.087   RAB8B, member RAS oncogene family 
RAB3D                 0.087   RAB3D, member RAS oncogene family 
RAB8A                 0.086   mel transforming oncogene 
RAB10                 0.086   ras-related GTP-binding protein RAB10 
RAB3C                 0.084   RAB3C, member RAS oncogene family 
EFCAB4A               0.081   EF-hand calcium binding domain 4A 
RAB37                 0.081   RAB37, member RAS oncogene family isoform 2 
RAB26                 0.081   RAB26, member RAS oncogene family 
RAB1A                 0.080   RAB1A, member RAS oncogene family isoform 1 
RAB37                 0.079   RAB37, member RAS oncogene family isoform 3 
RAB1B                 0.079   RAB1B, member RAS oncogene family 
RAB6A                 0.079   RAB6A, member RAS oncogene family isoform a 
RAB6A                 0.078   RAB6A, member RAS oncogene family isoform b 
RAB43                 0.078   RAB43 protein 
RAB27B                0.078   RAB27B, member RAS oncogene family 
RAB12                 0.077   RAB12, member RAS oncogene family 
RAB25                 0.077   RAB25 
RAB2B                 0.076   RAB2B protein isoform 1 
RAB2A                 0.076   RAB2A, member RAS oncogene family 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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