Guide to the Human Genome
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Name: CBARA1 Sequence: fasta or formatted (478aa) NCBI GI: 116256483
Description:

calcium binding atopy-related autoantigen 1

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         30           1
 C cysteine            1.5          7           1
 D aspartate           6.3         30           1
 E glutamate           7.5         36           2
 F phenylalanine       6.9         33           2
 G glycine             6.9         33           2
 H histidine           2.3         11           1
 I isoleucine          4.2         20           2
 K lysine              8.6         41           4
 L leucine             8.8         42           2
 M methionine          3.8         18           2
 N asparagine          3.1         15           1
 P proline             3.1         15           2
 Q glutamine           4.6         22           2
 R arginine            6.1         29           3
 S serine              6.1         29           1
 T threonine           5.9         28           2
 V valine              5.2         25           2
 W tryptophan          0.8          4           1
 Y tyrosine            2.1         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium binding atopy-related autoantigen 1 
EFHA2                 0.130   EF-hand domain family, member A2 
EFHA1                 0.119   EF-hand domain family, member A1 
SLC25A12              0.032   solute carrier family 25, member 12 
SLC25A13              0.031   solute carrier family 25, member 13 isoform 2 
SLC25A13              0.031   solute carrier family 25, member 13 isoform 1 [Homo...
LPCAT2                0.013   lysophosphatidylcholine acyltransferase 2 
HPCA                  0.013   hippocalcin 
NCALD                 0.011   neurocalcin delta 
NCALD                 0.011   neurocalcin delta 
NCALD                 0.011   neurocalcin delta 
NCALD                 0.011   neurocalcin delta 
NCALD                 0.011   neurocalcin delta 
NCALD                 0.011   neurocalcin delta 
NCALD                 0.011   neurocalcin delta 
NCALD                 0.011   neurocalcin delta 
HPCAL1                0.011   hippocalcin-like 1 
HPCAL1                0.011   hippocalcin-like 1 
CIB4                  0.010   calcium and integrin binding family member 4 
PGM5                  0.009   phosphoglucomutase 5 
SPATA21               0.009   spermatogenesis associated 21 
EFCAB9                0.009   PREDICTED: EF-hand calcium binding domain 9 
EFCAB9                0.009   PREDICTED: EF-hand calcium binding domain 9 
FREQ                  0.007   frequenin homolog isoform 2 
FREQ                  0.007   frequenin homolog isoform 1 
CIB1                  0.007   calcium and integrin binding 1 
RCVRN                 0.007   recoverin 
CETN3                 0.007   centrin 3 
ACACA                 0.007   acetyl-Coenzyme A carboxylase alpha isoform 2 
ACACA                 0.007   acetyl-Coenzyme A carboxylase alpha isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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