Guide to the Human Genome
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Name: LOC401180 Sequence: fasta or formatted (320aa) NCBI GI: 169167792
Description:

PREDICTED: similar to hCG1745223

Not currently referenced in the text

Other entries for this name:
alt prot {319aa} PREDICTED: similar to hCG1745223
alt mRNA {320aa} PREDICTED: similar to hCG1745223
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         38           3
 C cysteine            1.9          6           1
 D aspartate           2.5          8           1
 E glutamate           3.8         12           2
 F phenylalanine       0.6          2           1
 G glycine             9.4         30           4
 H histidine           1.2          4           1
 I isoleucine          2.2          7           1
 K lysine              5.6         18           4
 L leucine             8.1         26           2
 M methionine          1.9          6           1
 N asparagine          0.9          3           1
 P proline            15.6         50           5
 Q glutamine           4.7         15           1
 R arginine            9.1         29           2
 S serine              9.7         31           3
 T threonine           5.9         19           2
 V valine              4.1         13           1
 W tryptophan          0.6          2           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1745223 
LOC401180             1.000   PREDICTED: similar to hCG1745223 
LOC401180             0.990   PREDICTED: similar to hCG1745223 
NACA                  0.064   nascent polypeptide-associated complex alpha subuni...
WIPF1                 0.056   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.056   WAS/WASL interacting protein family, member 1 
MUPCDH                0.048   mucin and cadherin-like isoform 1 
WIPF2                 0.048   WIRE protein 
PRB2                  0.046   proline-rich protein BstNI subfamily 2 
SMTN                  0.046   smoothelin isoform a 
CASKIN1               0.045   CASK interacting protein 1 
PRB1                  0.045   proline-rich protein BstNI subfamily 1 isoform 1 pre...
DIAPH1                0.040   diaphanous 1 isoform 2 
DIAPH1                0.040   diaphanous 1 isoform 1 
BCL9L                 0.040   B-cell CLL/lymphoma 9-like 
SMTN                  0.040   smoothelin isoform b 
SMTN                  0.040   smoothelin isoform c 
FLJ22184              0.040   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.040   PREDICTED: hypothetical protein LOC80164 
LOC100293375          0.038   PREDICTED: hypothetical protein 
FLJ22184              0.038   PREDICTED: hypothetical protein FLJ22184 
LOC643355             0.038   PREDICTED: hypothetical protein 
LOC643355             0.038   PREDICTED: hypothetical protein 
TAF4                  0.037   TBP-associated factor 4 
PRG4                  0.037   proteoglycan 4 isoform D 
PRG4                  0.037   proteoglycan 4 isoform C 
PRG4                  0.037   proteoglycan 4 isoform B 
PRG4                  0.037   proteoglycan 4 isoform A 
LOC100130882          0.035   PREDICTED: hypothetical protein 
LOC100130882          0.035   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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