Guide to the Human Genome
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Name: LOC100130882 Sequence: fasta or formatted (359aa) NCBI GI: 169168296
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {442aa} PREDICTED: hypothetical protein
alt mRNA {359aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         28           2
 C cysteine            2.5          9           1
 D aspartate           2.5          9           2
 E glutamate           4.7         17           2
 F phenylalanine       1.1          4           1
 G glycine             8.9         32           3
 H histidine           3.1         11           2
 I isoleucine          1.9          7           1
 K lysine              6.1         22           2
 L leucine             8.6         31           2
 M methionine          3.1         11           2
 N asparagine          1.1          4           1
 P proline            12.3         44           3
 Q glutamine           4.5         16           2
 R arginine            8.6         31           2
 S serine             10.0         36           3
 T threonine           5.3         19           2
 V valine              5.3         19           1
 W tryptophan          0.6          2           1
 Y tyrosine            1.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130882          1.000   PREDICTED: hypothetical protein 
LOC100130882          0.935   PREDICTED: hypothetical protein 
SYN1                  0.043   synapsin I isoform Ia 
SYN1                  0.043   synapsin I isoform Ib 
PCLO                  0.041   piccolo isoform 2 
PCLO                  0.041   piccolo isoform 1 
LOC100291868          0.036   PREDICTED: hypothetical protein XP_002345322 
LOC100290196          0.036   PREDICTED: hypothetical protein XP_002347647 
LOC100289429          0.036   PREDICTED: hypothetical protein XP_002342197 
APC2                  0.035   adenomatosis polyposis coli 2 
PRB1                  0.035   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB2                  0.034   proline-rich protein BstNI subfamily 2 
PRB3                  0.034   proline-rich protein BstNI subfamily 3 precursor [H...
MARCKS                0.032   myristoylated alanine-rich protein kinase C substra...
LOC401180             0.031   PREDICTED: similar to hCG1745223 
LOC401180             0.031   PREDICTED: similar to hCG1745223 
CPSF6                 0.031   cleavage and polyadenylation specific factor 6, 68 ...
EML3                  0.031   echinoderm microtubule associated protein like 3 [H...
OGFR                  0.031   opioid growth factor receptor 
LOC100292934          0.029   PREDICTED: hypothetical protein 
NACA                  0.029   nascent polypeptide-associated complex alpha subuni...
COL7A1                0.029   alpha 1 type VII collagen precursor 
CCDC88C               0.029   DVL-binding protein DAPLE 
SCARF2                0.028   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.028   scavenger receptor class F, member 2 isoform 2 [Homo...
FLJ22184              0.028   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.028   PREDICTED: hypothetical protein FLJ22184 
PRB1                  0.028   proline-rich protein BstNI subfamily 1 isoform 2 pre...
SRRM2                 0.028   splicing coactivator subunit SRm300 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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