Guide to the Human Genome
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Name: LOC100128084 Sequence: fasta or formatted (286aa) NCBI GI: 169166423
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         16           1
 C cysteine            3.8         11           1
 D aspartate           5.2         15           1
 E glutamate           0.7          2           1
 F phenylalanine       1.0          3           1
 G glycine             8.7         25           1
 H histidine           2.1          6           1
 I isoleucine          0.7          2           1
 K lysine              0.7          2           1
 L leucine             5.9         17           2
 M methionine          1.0          3           1
 N asparagine          0.3          1           1
 P proline            19.9         57           2
 Q glutamine           8.0         23           1
 R arginine            6.3         18           1
 S serine              7.7         22           1
 T threonine          11.9         34           2
 V valine             10.1         29           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC647546             0.084   PREDICTED: hypothetical protein 
NACA                  0.084   nascent polypeptide-associated complex alpha subuni...
PRG4                  0.074   proteoglycan 4 isoform D 
PRG4                  0.074   proteoglycan 4 isoform C 
PRG4                  0.074   proteoglycan 4 isoform B 
PRG4                  0.074   proteoglycan 4 isoform A 
LOC100128719          0.074   PREDICTED: hypothetical protein, partial 
LOC100128719          0.074   PREDICTED: hypothetical protein, partial 
FLJ22184              0.074   PREDICTED: hypothetical protein FLJ22184 
MUC2                  0.069   mucin 2 precursor 
MUC3A                 0.069   PREDICTED: mucin 3A, cell surface associated, parti...
FLJ22184              0.069   PREDICTED: hypothetical protein LOC80164 
COL27A1               0.065   collagen, type XXVII, alpha 1 
LOC100134663          0.060   PREDICTED: hypothetical protein, partial 
FLJ22184              0.060   PREDICTED: hypothetical protein FLJ22184 
CREBBP                0.053   CREB binding protein isoform b 
CREBBP                0.053   CREB binding protein isoform a 
PLEKHG2               0.052   common-site lymphoma/leukemia guanine nucleotide ex...
YLPM1                 0.052   YLP motif containing 1 
LOC100294420          0.052   PREDICTED: similar to mucin 2 
MUC7                  0.050   mucin 7, secreted precursor 
MUC7                  0.050   mucin 7, secreted precursor 
MUC7                  0.050   mucin 7, secreted precursor 
KIAA0754              0.050   hypothetical protein LOC643314 
SRCAP                 0.050   Snf2-related CBP activator protein 
ZNF207                0.048   zinc finger protein 207 isoform a 
WIPF1                 0.046   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.046   WAS/WASL interacting protein family, member 1 
MUC6                  0.046   mucin 6, gastric 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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