Guide to the Human Genome
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Search of human proteins with 169164311

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169164311 PREDICTED: similar to hCG2014450 [Homo sapiens]
         (297 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169164311 PREDICTED: similar to hCG2014450 [Homo sapiens]          633   0.0  
gi|169164745 PREDICTED: similar to hCG2014450 [Homo sapiens]          627   e-180
gi|169163050 PREDICTED: hypothetical protein LOC100127989 [Homo ...   627   e-180
gi|169164663 PREDICTED: similar to mediator complex subunit 15 [...   365   e-101
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]      122   5e-28
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]      122   5e-28
gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo ...    37   0.027
gi|239740786 PREDICTED: hypothetical protein [Homo sapiens]            37   0.027
gi|239740731 PREDICTED: hypothetical protein [Homo sapiens]            37   0.027
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      36   0.047
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]               35   0.061
gi|119829187 alpha 1 type XVII collagen [Homo sapiens]                 35   0.10 
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]     34   0.14 
gi|61966733 hypothetical protein LOC388199 [Homo sapiens]              34   0.14 
gi|61744471 low density lipoprotein receptor-related protein 8 i...    34   0.18 
gi|66082554 low density lipoprotein receptor-related protein 8 i...    34   0.18 
gi|65301119 low density lipoprotein receptor-related protein 8 i...    34   0.18 
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    34   0.18 
gi|156071470 hyperpolarization activated cyclic nucleotide-gated...    33   0.23 
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    33   0.23 
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    33   0.23 
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    33   0.23 
gi|239753972 PREDICTED: hypothetical protein [Homo sapiens]            33   0.23 
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]                33   0.23 
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]     33   0.23 
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]     33   0.23 
gi|4503519 eukaryotic translation initiation factor 3, subunit 5...    33   0.39 
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    33   0.39 
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa...    33   0.39 
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s...    33   0.39 

>gi|169164311 PREDICTED: similar to hCG2014450 [Homo sapiens]
          Length = 297

 Score =  633 bits (1633), Expect = 0.0
 Identities = 297/297 (100%), Positives = 297/297 (100%)

Query: 1   MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60
           MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL
Sbjct: 1   MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60

Query: 61  TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGL 120
           TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGL
Sbjct: 61  TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGL 120

Query: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPEGTVP 180
           VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPEGTVP
Sbjct: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPEGTVP 180

Query: 181 RPHPVFTCRQAGAGARGILLPAPLCHSCEGHVPIVKDEEPGPLDPRPQNTTRCHPESAGL 240
           RPHPVFTCRQAGAGARGILLPAPLCHSCEGHVPIVKDEEPGPLDPRPQNTTRCHPESAGL
Sbjct: 181 RPHPVFTCRQAGAGARGILLPAPLCHSCEGHVPIVKDEEPGPLDPRPQNTTRCHPESAGL 240

Query: 241 ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG 297
           ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG
Sbjct: 241 ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG 297


>gi|169164745 PREDICTED: similar to hCG2014450 [Homo sapiens]
          Length = 297

 Score =  627 bits (1618), Expect = e-180
 Identities = 294/297 (98%), Positives = 296/297 (99%)

Query: 1   MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60
           MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL
Sbjct: 1   MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60

Query: 61  TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGL 120
           TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISS+LQGL
Sbjct: 61  TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSVLQGL 120

Query: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPEGTVP 180
           VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKP+GTVP
Sbjct: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPQGTVP 180

Query: 181 RPHPVFTCRQAGAGARGILLPAPLCHSCEGHVPIVKDEEPGPLDPRPQNTTRCHPESAGL 240
           RPHPVFTCRQAGAGARGILLPAPLCHSCEG VPIVKDEEPGPLDPRPQNTTRCHPESAGL
Sbjct: 181 RPHPVFTCRQAGAGARGILLPAPLCHSCEGRVPIVKDEEPGPLDPRPQNTTRCHPESAGL 240

Query: 241 ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG 297
           ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG
Sbjct: 241 ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG 297


>gi|169163050 PREDICTED: hypothetical protein LOC100127989 [Homo
           sapiens]
          Length = 297

 Score =  627 bits (1618), Expect = e-180
 Identities = 294/297 (98%), Positives = 296/297 (99%)

Query: 1   MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60
           MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL
Sbjct: 1   MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60

Query: 61  TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGL 120
           TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISS+LQGL
Sbjct: 61  TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSVLQGL 120

Query: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPEGTVP 180
           VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKP+GTVP
Sbjct: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPQGTVP 180

Query: 181 RPHPVFTCRQAGAGARGILLPAPLCHSCEGHVPIVKDEEPGPLDPRPQNTTRCHPESAGL 240
           RPHPVFTCRQAGAGARGILLPAPLCHSCEG VPIVKDEEPGPLDPRPQNTTRCHPESAGL
Sbjct: 181 RPHPVFTCRQAGAGARGILLPAPLCHSCEGRVPIVKDEEPGPLDPRPQNTTRCHPESAGL 240

Query: 241 ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG 297
           ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG
Sbjct: 241 ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG 297


>gi|169164663 PREDICTED: similar to mediator complex subunit 15
           [Homo sapiens]
          Length = 229

 Score =  365 bits (937), Expect = e-101
 Identities = 177/222 (79%), Positives = 188/222 (84%), Gaps = 14/222 (6%)

Query: 1   MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60
           MAVVSGILGIPG IGAPPRAPG+T GRGLQAH PTAPGATD TAVPMPAAPGCHPGQHPL
Sbjct: 1   MAVVSGILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHPL 60

Query: 61  TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGL 120
           TLFNHSLY IFMPT+IAIHSPPITYIQLGWAS+RAPVVCT+KHRLEDDEQQSI S+LQGL
Sbjct: 61  TLFNHSLYRIFMPTMIAIHSPPITYIQLGWASQRAPVVCTQKHRLEDDEQQSIPSVLQGL 120

Query: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPEGTVP 180
           VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGW ++ATP+ SPR LLSK EGTVP
Sbjct: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWRKRATPNCSPRPLLSKLEGTVP 180

Query: 181 RPHPVFTCRQ--------------AGAGARGILLPAPLCHSC 208
           RPHP+FTC+Q              A A   G   P+P  H C
Sbjct: 181 RPHPMFTCQQVVCSVFWAQDRLAIASAPTPGAHAPSPPQHRC 222


>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
          Length = 788

 Score =  122 bits (305), Expect = 5e-28
 Identities = 60/90 (66%), Positives = 69/90 (76%), Gaps = 10/90 (11%)

Query: 62  LFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGLV 121
           +FNHSLY  F+P + AIH PPIT          APVVCTRK RLEDDE+QSI S+LQG V
Sbjct: 633 VFNHSLYRTFVPAMTAIHGPPIT----------APVVCTRKRRLEDDERQSIPSVLQGEV 682

Query: 122 ARLEPKCMINLDPSHCSNNGTVRLICKLGE 151
           ARL+PK ++NLDPSHCSNNGTV LICKL +
Sbjct: 683 ARLDPKFLVNLDPSHCSNNGTVHLICKLDD 712


>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
          Length = 748

 Score =  122 bits (305), Expect = 5e-28
 Identities = 60/90 (66%), Positives = 69/90 (76%), Gaps = 10/90 (11%)

Query: 62  LFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGLV 121
           +FNHSLY  F+P + AIH PPIT          APVVCTRK RLEDDE+QSI S+LQG V
Sbjct: 593 VFNHSLYRTFVPAMTAIHGPPIT----------APVVCTRKRRLEDDERQSIPSVLQGEV 642

Query: 122 ARLEPKCMINLDPSHCSNNGTVRLICKLGE 151
           ARL+PK ++NLDPSHCSNNGTV LICKL +
Sbjct: 643 ARLDPKFLVNLDPSHCSNNGTVHLICKLDD 672


>gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo
           sapiens]
          Length = 138

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 11  PGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLTLFNHSLYCI 70
           P R G PP  P T    GL     +  G++ P   P PA+P  HP + PL       + +
Sbjct: 33  PEREGQPPHLPPTPGSLGLPG---SGHGSSGPA--PPPASPS-HPHRLPLQPLGFLSFLV 86

Query: 71  FMPTLIAIHSPPITYIQLGW 90
             PT +    P ++   LGW
Sbjct: 87  SSPTHLQRPPPLLSRCDLGW 106


>gi|239740786 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 138

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 11  PGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLTLFNHSLYCI 70
           P R G PP  P T    GL     +  G++ P   P PA+P  HP + PL       + +
Sbjct: 33  PEREGQPPHLPPTPGSLGLPG---SGHGSSGPA--PPPASPS-HPHRLPLQPLGFLSFLV 86

Query: 71  FMPTLIAIHSPPITYIQLGW 90
             PT +    P ++   LGW
Sbjct: 87  SSPTHLQRPPPLLSRCDLGW 106


>gi|239740731 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 138

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 11  PGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLTLFNHSLYCI 70
           P R G PP  P T    GL     +  G++ P   P PA+P  HP + PL       + +
Sbjct: 33  PEREGQPPHLPPTPGSLGLPG---SGHGSSGPA--PPPASPS-HPHRLPLQPLGFLSFLV 86

Query: 71  FMPTLIAIHSPPITYIQLGW 90
             PT +    P ++   LGW
Sbjct: 87  SSPTHLQRPPPLLSRCDLGW 106


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 35.8 bits (81), Expect = 0.047
 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 4   VSGILGIPGRIG--APPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPG 56
           V G+ G PG  G   PP  PGT+   G    SP +PG   P   P  A P   PG
Sbjct: 166 VGGLAGYPGPAGPPGPPGPPGTSGHPG----SPGSPGYQGPPGEPGQAGPSGPPG 216



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 4    VSGILGIPGRIGAP-----PRAPGTTAGRGLQAH--SPTAPGATDPTAVPMPAAPGCHPG 56
            ++G  G PGR G P     P   G+  G+G +    SP APGA      P P  P    G
Sbjct: 1003 LAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSG 1062


>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
          Length = 464

 Score = 35.4 bits (80), Expect = 0.061
 Identities = 26/75 (34%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 11  PGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCH---PGQHPLTLFNHSL 67
           P   G  P APG           P APG   PT+   P APG H   PG HP     H  
Sbjct: 303 PPAPGVHPPAPGV---------HPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPP 353

Query: 68  YCIFMPTLIAIHSPP 82
                P    +H PP
Sbjct: 354 APGVHPPAPGVHPPP 368



 Score = 33.5 bits (75), Expect = 0.23
 Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 11  PGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCH---PGQHP 59
           P   G  P+APG        A  P APG   P     P APG H   PG HP
Sbjct: 367 PPSAGVHPQAPGVHPAA--PAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHP 416



 Score = 32.7 bits (73), Expect = 0.39
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 17  PPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCH---PGQHP 59
           PP  P  +   G     P APG   P  V  P A G H   PG HP
Sbjct: 265 PPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHP 310



 Score = 32.3 bits (72), Expect = 0.52
 Identities = 26/76 (34%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 9   GIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCH---PGQHPLTLFNH 65
           G PG    PP APG      +    P A G   P     P APG H   PG HP T   H
Sbjct: 273 GPPGPPQLPPPAPGVHPPAPVV--HPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVH 330

Query: 66  SLYCIFMPTLIAIHSP 81
                  P    +H P
Sbjct: 331 PPAPGVHPPAPGVHPP 346


>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
          Length = 1497

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 1   MAVVSGILGIPGRIG--APPRAPGTTAGRGLQAHSPT-----APGATDPTAVPMPAAPG 52
           M  V G  G PG +G   PP APG     GL  H         PG   P   P P+ PG
Sbjct: 816 MLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPG 874



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 6   GILGIPGRIG--APPRAPG---TTAGRGLQA-----HSPTAPGATDPTAVPMPAAPGCHP 55
           G+ G PGR G    P APG   T+ G  +         P A G   P   P PA P   P
Sbjct: 788 GLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLP 847

Query: 56  G 56
           G
Sbjct: 848 G 848


>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
          Length = 1669

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 5   SGILGIPGRIGAP--PRAPGTTAGRGLQAHSPTAPGATDPTAVP-MPAAPGCH 54
           SG+ G+PG+ GAP  P  PG+    G+   +P  PG+  P   P +P   G H
Sbjct: 857 SGLPGLPGQQGAPGIPGFPGSKGEMGVMG-TPGQPGSPGPVGAPGLPGEKGDH 908



 Score = 32.0 bits (71), Expect = 0.67
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 4    VSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPG 56
            V+G++GIPG    PP  PG     G +     A G T P   P P  P   PG
Sbjct: 1385 VTGLVGIPG----PPGIPGFDGAPGQKGEMGPA-GPTGPRGFPGPPGPDGLPG 1432



 Score = 28.5 bits (62), Expect = 7.4
 Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 6   GILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLT 61
           G  GIPG  G PP  PG     G        PG T P   P P  P    GQ  L+
Sbjct: 176 GFPGIPGTPG-PPGLPGLQGPVG-------PPGFTGPPGPPGPPGPPGEKGQMGLS 223


>gi|61966733 hypothetical protein LOC388199 [Homo sapiens]
          Length = 402

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 18/92 (19%)

Query: 3   VVSGI-LGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLT 61
           V +GI L  PG     P    T   R   +  P APGA      P+PA PG  PG     
Sbjct: 326 VAAGIWLVEPGEAAQDPATRRTAPPRRTASPEPPAPGA------PLPACPGRIPGA---- 375

Query: 62  LFNHSLYCIFMPTLIAIHSPPITYIQLGWASR 93
                    F P    + SP +  +  GW+ R
Sbjct: 376 -------ARFGPRSCPLGSPAVLAVTTGWSHR 400


>gi|61744471 low density lipoprotein receptor-related protein 8
           isoform 1 precursor [Homo sapiens]
          Length = 963

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 14  IGAPPRAPGTTAGRGL-QAHSPTAPGATD--PTAVPMPAAPGCHPGQHPLTLFNHS 66
           + A  RAPGTT  R   Q HS   P  T   P++V +P AP   P        NHS
Sbjct: 754 VPATTRAPGTTVHRSTYQNHSTETPSLTAAVPSSVSVPRAPSISPSTLSPATSNHS 809


>gi|66082554 low density lipoprotein receptor-related protein 8
           isoform 2 precursor [Homo sapiens]
          Length = 793

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 14  IGAPPRAPGTTAGRGL-QAHSPTAPGATD--PTAVPMPAAPGCHPGQHPLTLFNHS 66
           + A  RAPGTT  R   Q HS   P  T   P++V +P AP   P        NHS
Sbjct: 584 VPATTRAPGTTVHRSTYQNHSTETPSLTAAVPSSVSVPRAPSISPSTLSPATSNHS 639


>gi|65301119 low density lipoprotein receptor-related protein 8
           isoform 4 precursor [Homo sapiens]
          Length = 904

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 14  IGAPPRAPGTTAGRGL-QAHSPTAPGATD--PTAVPMPAAPGCHPGQHPLTLFNHS 66
           + A  RAPGTT  R   Q HS   P  T   P++V +P AP   P        NHS
Sbjct: 754 VPATTRAPGTTVHRSTYQNHSTETPSLTAAVPSSVSVPRAPSISPSTLSPATSNHS 809


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 18  PRAPGTTAGRG--LQAHSPTAPGATDPTAVPMPAAPGCHPGQHP 59
           P APGT       + A +P AP A  P A P PAAP   P   P
Sbjct: 231 PAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPP 274


>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
          potassium channel 2 [Homo sapiens]
          Length = 889

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 15 GAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPA---APGCHPGQHP 59
          G P  +PG T   G     P AP    P   P PA    PG  P QHP
Sbjct: 8  GRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHP 55



 Score = 28.9 bits (63), Expect = 5.7
 Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 17/102 (16%)

Query: 126 PKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPEGTVPRPHPV 185
           P+  +    S C   GT          P G   C +  P  SP      PEG    P   
Sbjct: 71  PRGRLRSRDSSCGRPGTPGAASTAKGSPNGE--CGRGEPQCSPAG----PEGPARGPKVS 124

Query: 186 FTCRQAGAGARGILLPAPLCHSCEGHVPIVKDEEPGPL-DPR 226
           F+CR A +G      PAP      G       EE GP  +PR
Sbjct: 125 FSCRGAASG------PAP----GPGPAEEAGSEEAGPAGEPR 156


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 2    AVVSGILGIPGRIGAPPRAPGTTAGRGLQAHS-PTAPGATD----PTAVPMPAAPGCHPG 56
            A  +G +G+PGR G P   PG    +G      P  P   D    P  +P PA P   PG
Sbjct: 1077 AGTAGPIGLPGRPG-PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPG 1135

Query: 57   Q 57
            +
Sbjct: 1136 E 1136



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 6    GILGIPGRIG--APPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPG 56
            G  G PG IG   PP   G    RGL   +  +PGA     +P PA P   PG
Sbjct: 1462 GEKGHPGLIGLIGPPGEQGEKGDRGLPG-TQGSPGAKGDGGIPGPAGPLGPPG 1513


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 2    AVVSGILGIPGRIGAPPRAPGTTAGRGLQAHS-PTAPGATD----PTAVPMPAAPGCHPG 56
            A  +G +G+PGR G P   PG    +G      P  P   D    P  +P PA P   PG
Sbjct: 1026 AGTAGPIGLPGRPG-PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPG 1084

Query: 57   Q 57
            +
Sbjct: 1085 E 1085



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 6    GILGIPGRIG--APPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPG 56
            G  G PG IG   PP   G    RGL   +  +PGA     +P PA P   PG
Sbjct: 1411 GEKGHPGLIGLIGPPGEQGEKGDRGLPG-TQGSPGAKGDGGIPGPAGPLGPPG 1462


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
            sapiens]
          Length = 1806

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 2    AVVSGILGIPGRIGAPPRAPGTTAGRGLQAHS-PTAPGATD----PTAVPMPAAPGCHPG 56
            A  +G +G+PGR G P   PG    +G      P  P   D    P  +P PA P   PG
Sbjct: 1065 AGTAGPIGLPGRPG-PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPG 1123

Query: 57   Q 57
            +
Sbjct: 1124 E 1124



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 6    GILGIPGRIG--APPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPG 56
            G  G PG IG   PP   G    RGL   +  +PGA     +P PA P   PG
Sbjct: 1450 GEKGHPGLIGLIGPPGEQGEKGDRGLPG-TQGSPGAKGDGGIPGPAGPLGPPG 1501


>gi|239753972 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 298

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 17  PPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLTLFNHSLYCIFM---P 73
           PP  P T        H PT   +T P +  +P  P  HP  HP   F H L  +F+   P
Sbjct: 91  PPIHPSTNPPIHPSTH-PTIHPSTHPPSTYLPIHPSAHPLIHP---FIHPLTHLFIHPPP 146

Query: 74  TLIAIHSPPITYIQL 88
           T   IH P  + I L
Sbjct: 147 THSPIHPPTHSSIHL 161


>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
          Length = 703

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 5   SGILGIPGRIGAPPRAPGTTAGRGLQAHS-----PTAPGATDPTAVPMPAAPG 52
           +G  G+PG++G PP  PG     G++        P  PG   P+ + +P  PG
Sbjct: 125 AGPPGLPGKVG-PPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPG 176



 Score = 29.3 bits (64), Expect = 4.4
 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 6   GILGIPGRIGAPPRA----PGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPG 56
           G+ G PG  G P       PGT    G     P +PG T P   P P  P   PG
Sbjct: 481 GLKGEPGLPGPPGEGRAGEPGTAGPTGPPG-VPGSPGITGPPGPPGPPGPPGAPG 534



 Score = 28.9 bits (63), Expect = 5.7
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 8   LGIPGRIGAP-PRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPG 52
           +G+PG  G P P+ P    G   +  +   PG   PT   MP  PG
Sbjct: 280 VGVPGAAGLPGPQGPSGAKG---EPGTRGPPGLIGPTGYGMPGLPG 322


>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
          Length = 920

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 8   LGIPGRIGAPPRAPGTTAGR---GLQAHSPTAPGATDPTAVPMPAAP-GCHPG 56
           + IP  +  PP A G  A +   G  A +  AP A+DP + P+ A+P   HPG
Sbjct: 696 VAIPDSVLTPPGADGAAARKTQFGASATAALAPVASDPLSPPLSASPRDKHPG 748


>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
          Length = 901

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 8   LGIPGRIGAPPRAPGTTAGR---GLQAHSPTAPGATDPTAVPMPAAP-GCHPG 56
           + IP  +  PP A G  A +   G  A +  AP A+DP + P+ A+P   HPG
Sbjct: 677 VAIPDSVLTPPGADGAAARKTQFGASATAALAPVASDPLSPPLSASPRDKHPG 729


>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
          epsilon, 47kDa [Homo sapiens]
          Length = 357

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 11 PGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPG-----QHPLTL 62
          P     P  A   TA  G    S  AP  T   A+P PA PG  PG      HP+ L
Sbjct: 43 PASSSDPAAAAAATAAPGQTPASAQAPAQTPAPALPGPALPGPFPGGRVVRLHPVIL 99



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 11 PGRIGAPPRAPGTTAGRGLQAHSPTAPGATD-----PTAVPMPAAPG-CHPGQHP 59
          P     P  AP +++     A +  APG T      P   P PA PG   PG  P
Sbjct: 33 PAAAPVPAAAPASSSDPAAAAAATAAPGQTPASAQAPAQTPAPALPGPALPGPFP 87


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
           sapiens]
          Length = 1691

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 6   GILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLTLFNH 65
           G  GIPG    PP APGT    GL+   P  PG   P   P  A PG  PG   L  F  
Sbjct: 716 GFPGIPG----PPGAPGTPGRIGLEG-PPGPPGFPGPKGEPGFALPG-PPGPPGLPGFKG 769

Query: 66  SL 67
           +L
Sbjct: 770 AL 771



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 14/64 (21%)

Query: 6   GILGIPGRIGAP-----------PRAPGTTAGRGLQAHS--PTAPGATDPTAVPMPAAPG 52
           G LGIPGR G P           P  PG T  +G +     P  PG  DP  +      G
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967

Query: 53  CHPG 56
             PG
Sbjct: 968 -EPG 970



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 7    ILGIPGRIGAP--PRAPGTTAGRGLQA--HSPTAPGATDPTAVPMPAAPGCHPG 56
            +LG  G  G P  P  PG +  +G Q     P  PG +    +P P  P  +PG
Sbjct: 959  LLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPG 1012



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 6    GILGIPGRIGAP--PRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQ 57
            G+ G PG  G P  P  PGT    G +  S   PG       P P   G HPGQ
Sbjct: 1107 GLPGTPGAKGQPGLPGFPGTPGPPGPKGISGP-PGNPGLPGEPGPVGGGGHPGQ 1159



 Score = 28.9 bits (63), Expect = 5.7
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 16/65 (24%)

Query: 9    GIPGRIG---------APPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHP 59
            G+PG  G          PP  PG    +GL       PG   P  +P P  P   PG++ 
Sbjct: 1366 GLPGPSGQSIIIKGDAGPPGIPGQPGLKGL-------PGPQGPQGLPGPTGPPGDPGRNG 1418

Query: 60   LTLFN 64
            L  F+
Sbjct: 1419 LPGFD 1423



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 6    GILGIPGRIG--APPRAPGTTAGRGLQAHS--------PTAPGATDPTAVPMPAAPGCHP 55
            G+ G+PG  G   PP   G     GL            P  PG   P+ VP  A P   P
Sbjct: 1297 GLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEP 1356

Query: 56   G 56
            G
Sbjct: 1357 G 1357


>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
           sapiens]
          Length = 1685

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 6   GILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLTLFNH 65
           G  GIPG    PP APGT    GL+   P  PG   P   P  A PG  PG   L  F  
Sbjct: 716 GFPGIPG----PPGAPGTPGRIGLEG-PPGPPGFPGPKGEPGFALPG-PPGPPGLPGFKG 769

Query: 66  SL 67
           +L
Sbjct: 770 AL 771



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 14/64 (21%)

Query: 6   GILGIPGRIGAP-----------PRAPGTTAGRGLQAHS--PTAPGATDPTAVPMPAAPG 52
           G LGIPGR G P           P  PG T  +G +     P  PG  DP  +      G
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967

Query: 53  CHPG 56
             PG
Sbjct: 968 -EPG 970



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 7    ILGIPGRIGAP--PRAPGTTAGRGLQA--HSPTAPGATDPTAVPMPAAPGCHPG 56
            +LG  G  G P  P  PG +  +G Q     P  PG +    +P P  P  +PG
Sbjct: 959  LLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPG 1012



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 6    GILGIPGRIGAP--PRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQ 57
            G+ G PG  G P  P  PGT    G +  S   PG       P P   G HPGQ
Sbjct: 1107 GLPGTPGAKGQPGLPGFPGTPGPPGPKGISGP-PGNPGLPGEPGPVGGGGHPGQ 1159



 Score = 28.9 bits (63), Expect = 5.7
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 16/65 (24%)

Query: 9    GIPGRIG---------APPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHP 59
            G+PG  G          PP  PG    +GL       PG   P  +P P  P   PG++ 
Sbjct: 1360 GLPGPSGQSIIIKGDAGPPGIPGQPGLKGL-------PGPQGPQGLPGPTGPPGDPGRNG 1412

Query: 60   LTLFN 64
            L  F+
Sbjct: 1413 LPGFD 1417



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 6    GILGIPGRIG--APPRAPGTTAGRGLQAHS--------PTAPGATDPTAVPMPAAPGCHP 55
            G+ G+PG  G   PP   G     GL            P  PG   P+ VP  A P   P
Sbjct: 1291 GLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEP 1350

Query: 56   G 56
            G
Sbjct: 1351 G 1351


>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
           sapiens]
          Length = 1688

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 6   GILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLTLFNH 65
           G  GIPG    PP APGT    GL+   P  PG   P   P  A PG  PG   L  F  
Sbjct: 716 GFPGIPG----PPGAPGTPGRIGLEG-PPGPPGFPGPKGEPGFALPG-PPGPPGLPGFKG 769

Query: 66  SL 67
           +L
Sbjct: 770 AL 771



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 14/64 (21%)

Query: 6   GILGIPGRIGAP-----------PRAPGTTAGRGLQAHS--PTAPGATDPTAVPMPAAPG 52
           G LGIPGR G P           P  PG T  +G +     P  PG  DP  +      G
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967

Query: 53  CHPG 56
             PG
Sbjct: 968 -EPG 970



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 7    ILGIPGRIGAP--PRAPGTTAGRGLQA--HSPTAPGATDPTAVPMPAAPGCHPG 56
            +LG  G  G P  P  PG +  +G Q     P  PG +    +P P  P  +PG
Sbjct: 959  LLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPG 1012



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 6    GILGIPGRIGAP--PRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQ 57
            G+ G PG  G P  P  PGT    G +  S   PG       P P   G HPGQ
Sbjct: 1107 GLPGTPGAKGQPGLPGFPGTPGPPGPKGISGP-PGNPGLPGEPGPVGGGGHPGQ 1159



 Score = 28.9 bits (63), Expect = 5.7
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 16/65 (24%)

Query: 9    GIPGRIG---------APPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHP 59
            G+PG  G          PP  PG    +GL       PG   P  +P P  P   PG++ 
Sbjct: 1363 GLPGPSGQSIIIKGDAGPPGIPGQPGLKGL-------PGPQGPQGLPGPTGPPGDPGRNG 1415

Query: 60   LTLFN 64
            L  F+
Sbjct: 1416 LPGFD 1420



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 6    GILGIPGRIG--APPRAPGTTAGRGLQAHS--------PTAPGATDPTAVPMPAAPGCHP 55
            G+ G+PG  G   PP   G     GL            P  PG   P+ VP  A P   P
Sbjct: 1294 GLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEP 1353

Query: 56   G 56
            G
Sbjct: 1354 G 1354


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,810,211
Number of Sequences: 37866
Number of extensions: 967979
Number of successful extensions: 4734
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 4408
Number of HSP's gapped (non-prelim): 540
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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