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Search of human proteins with 169164311
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169164311 PREDICTED: similar to hCG2014450 [Homo sapiens]
(297 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169164311 PREDICTED: similar to hCG2014450 [Homo sapiens] 633 0.0
gi|169164745 PREDICTED: similar to hCG2014450 [Homo sapiens] 627 e-180
gi|169163050 PREDICTED: hypothetical protein LOC100127989 [Homo ... 627 e-180
gi|169164663 PREDICTED: similar to mediator complex subunit 15 [... 365 e-101
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 122 5e-28
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 122 5e-28
gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo ... 37 0.027
gi|239740786 PREDICTED: hypothetical protein [Homo sapiens] 37 0.027
gi|239740731 PREDICTED: hypothetical protein [Homo sapiens] 37 0.027
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 36 0.047
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 35 0.061
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 35 0.10
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 34 0.14
gi|61966733 hypothetical protein LOC388199 [Homo sapiens] 34 0.14
gi|61744471 low density lipoprotein receptor-related protein 8 i... 34 0.18
gi|66082554 low density lipoprotein receptor-related protein 8 i... 34 0.18
gi|65301119 low density lipoprotein receptor-related protein 8 i... 34 0.18
gi|110832843 TBP-associated factor 4 [Homo sapiens] 34 0.18
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 33 0.23
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 33 0.23
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 33 0.23
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 33 0.23
gi|239753972 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 33 0.23
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] 33 0.23
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] 33 0.23
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 33 0.39
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 33 0.39
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 33 0.39
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 33 0.39
>gi|169164311 PREDICTED: similar to hCG2014450 [Homo sapiens]
Length = 297
Score = 633 bits (1633), Expect = 0.0
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60
MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL
Sbjct: 1 MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60
Query: 61 TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGL 120
TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGL
Sbjct: 61 TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGL 120
Query: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPEGTVP 180
VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPEGTVP
Sbjct: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPEGTVP 180
Query: 181 RPHPVFTCRQAGAGARGILLPAPLCHSCEGHVPIVKDEEPGPLDPRPQNTTRCHPESAGL 240
RPHPVFTCRQAGAGARGILLPAPLCHSCEGHVPIVKDEEPGPLDPRPQNTTRCHPESAGL
Sbjct: 181 RPHPVFTCRQAGAGARGILLPAPLCHSCEGHVPIVKDEEPGPLDPRPQNTTRCHPESAGL 240
Query: 241 ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG 297
ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG
Sbjct: 241 ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG 297
>gi|169164745 PREDICTED: similar to hCG2014450 [Homo sapiens]
Length = 297
Score = 627 bits (1618), Expect = e-180
Identities = 294/297 (98%), Positives = 296/297 (99%)
Query: 1 MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60
MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL
Sbjct: 1 MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60
Query: 61 TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGL 120
TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISS+LQGL
Sbjct: 61 TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSVLQGL 120
Query: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPEGTVP 180
VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKP+GTVP
Sbjct: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPQGTVP 180
Query: 181 RPHPVFTCRQAGAGARGILLPAPLCHSCEGHVPIVKDEEPGPLDPRPQNTTRCHPESAGL 240
RPHPVFTCRQAGAGARGILLPAPLCHSCEG VPIVKDEEPGPLDPRPQNTTRCHPESAGL
Sbjct: 181 RPHPVFTCRQAGAGARGILLPAPLCHSCEGRVPIVKDEEPGPLDPRPQNTTRCHPESAGL 240
Query: 241 ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG 297
ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG
Sbjct: 241 ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG 297
>gi|169163050 PREDICTED: hypothetical protein LOC100127989 [Homo
sapiens]
Length = 297
Score = 627 bits (1618), Expect = e-180
Identities = 294/297 (98%), Positives = 296/297 (99%)
Query: 1 MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60
MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL
Sbjct: 1 MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60
Query: 61 TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGL 120
TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISS+LQGL
Sbjct: 61 TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSVLQGL 120
Query: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPEGTVP 180
VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKP+GTVP
Sbjct: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPQGTVP 180
Query: 181 RPHPVFTCRQAGAGARGILLPAPLCHSCEGHVPIVKDEEPGPLDPRPQNTTRCHPESAGL 240
RPHPVFTCRQAGAGARGILLPAPLCHSCEG VPIVKDEEPGPLDPRPQNTTRCHPESAGL
Sbjct: 181 RPHPVFTCRQAGAGARGILLPAPLCHSCEGRVPIVKDEEPGPLDPRPQNTTRCHPESAGL 240
Query: 241 ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG 297
ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG
Sbjct: 241 ADAVSPRAWAVLSDTLSHSLAWFIPSFLAKFCSLKQEEAEINANEVGPWAWEDCVAG 297
>gi|169164663 PREDICTED: similar to mediator complex subunit 15
[Homo sapiens]
Length = 229
Score = 365 bits (937), Expect = e-101
Identities = 177/222 (79%), Positives = 188/222 (84%), Gaps = 14/222 (6%)
Query: 1 MAVVSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPL 60
MAVVSGILGIPG IGAPPRAPG+T GRGLQAH PTAPGATD TAVPMPAAPGCHPGQHPL
Sbjct: 1 MAVVSGILGIPGGIGAPPRAPGSTTGRGLQAHCPTAPGATDQTAVPMPAAPGCHPGQHPL 60
Query: 61 TLFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGL 120
TLFNHSLY IFMPT+IAIHSPPITYIQLGWAS+RAPVVCT+KHRLEDDEQQSI S+LQGL
Sbjct: 61 TLFNHSLYRIFMPTMIAIHSPPITYIQLGWASQRAPVVCTQKHRLEDDEQQSIPSVLQGL 120
Query: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPEGTVP 180
VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGW ++ATP+ SPR LLSK EGTVP
Sbjct: 121 VARLEPKCMINLDPSHCSNNGTVRLICKLGECPGGPGWRKRATPNCSPRPLLSKLEGTVP 180
Query: 181 RPHPVFTCRQ--------------AGAGARGILLPAPLCHSC 208
RPHP+FTC+Q A A G P+P H C
Sbjct: 181 RPHPMFTCQQVVCSVFWAQDRLAIASAPTPGAHAPSPPQHRC 222
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 122 bits (305), Expect = 5e-28
Identities = 60/90 (66%), Positives = 69/90 (76%), Gaps = 10/90 (11%)
Query: 62 LFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGLV 121
+FNHSLY F+P + AIH PPIT APVVCTRK RLEDDE+QSI S+LQG V
Sbjct: 633 VFNHSLYRTFVPAMTAIHGPPIT----------APVVCTRKRRLEDDERQSIPSVLQGEV 682
Query: 122 ARLEPKCMINLDPSHCSNNGTVRLICKLGE 151
ARL+PK ++NLDPSHCSNNGTV LICKL +
Sbjct: 683 ARLDPKFLVNLDPSHCSNNGTVHLICKLDD 712
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 122 bits (305), Expect = 5e-28
Identities = 60/90 (66%), Positives = 69/90 (76%), Gaps = 10/90 (11%)
Query: 62 LFNHSLYCIFMPTLIAIHSPPITYIQLGWASRRAPVVCTRKHRLEDDEQQSISSMLQGLV 121
+FNHSLY F+P + AIH PPIT APVVCTRK RLEDDE+QSI S+LQG V
Sbjct: 593 VFNHSLYRTFVPAMTAIHGPPIT----------APVVCTRKRRLEDDERQSIPSVLQGEV 642
Query: 122 ARLEPKCMINLDPSHCSNNGTVRLICKLGE 151
ARL+PK ++NLDPSHCSNNGTV LICKL +
Sbjct: 643 ARLDPKFLVNLDPSHCSNNGTVHLICKLDD 672
>gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo
sapiens]
Length = 138
Score = 36.6 bits (83), Expect = 0.027
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 11 PGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLTLFNHSLYCI 70
P R G PP P T GL + G++ P P PA+P HP + PL + +
Sbjct: 33 PEREGQPPHLPPTPGSLGLPG---SGHGSSGPA--PPPASPS-HPHRLPLQPLGFLSFLV 86
Query: 71 FMPTLIAIHSPPITYIQLGW 90
PT + P ++ LGW
Sbjct: 87 SSPTHLQRPPPLLSRCDLGW 106
>gi|239740786 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 36.6 bits (83), Expect = 0.027
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 11 PGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLTLFNHSLYCI 70
P R G PP P T GL + G++ P P PA+P HP + PL + +
Sbjct: 33 PEREGQPPHLPPTPGSLGLPG---SGHGSSGPA--PPPASPS-HPHRLPLQPLGFLSFLV 86
Query: 71 FMPTLIAIHSPPITYIQLGW 90
PT + P ++ LGW
Sbjct: 87 SSPTHLQRPPPLLSRCDLGW 106
>gi|239740731 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 36.6 bits (83), Expect = 0.027
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 11 PGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLTLFNHSLYCI 70
P R G PP P T GL + G++ P P PA+P HP + PL + +
Sbjct: 33 PEREGQPPHLPPTPGSLGLPG---SGHGSSGPA--PPPASPS-HPHRLPLQPLGFLSFLV 86
Query: 71 FMPTLIAIHSPPITYIQLGW 90
PT + P ++ LGW
Sbjct: 87 SSPTHLQRPPPLLSRCDLGW 106
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 35.8 bits (81), Expect = 0.047
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 4 VSGILGIPGRIG--APPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPG 56
V G+ G PG G PP PGT+ G SP +PG P P A P PG
Sbjct: 166 VGGLAGYPGPAGPPGPPGPPGTSGHPG----SPGSPGYQGPPGEPGQAGPSGPPG 216
Score = 30.8 bits (68), Expect = 1.5
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 4 VSGILGIPGRIGAP-----PRAPGTTAGRGLQAH--SPTAPGATDPTAVPMPAAPGCHPG 56
++G G PGR G P P G+ G+G + SP APGA P P P G
Sbjct: 1003 LAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSG 1062
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 35.4 bits (80), Expect = 0.061
Identities = 26/75 (34%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 11 PGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCH---PGQHPLTLFNHSL 67
P G P APG P APG PT+ P APG H PG HP H
Sbjct: 303 PPAPGVHPPAPGV---------HPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPP 353
Query: 68 YCIFMPTLIAIHSPP 82
P +H PP
Sbjct: 354 APGVHPPAPGVHPPP 368
Score = 33.5 bits (75), Expect = 0.23
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 11 PGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCH---PGQHP 59
P G P+APG A P APG P P APG H PG HP
Sbjct: 367 PPSAGVHPQAPGVHPAA--PAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHP 416
Score = 32.7 bits (73), Expect = 0.39
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 17 PPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCH---PGQHP 59
PP P + G P APG P V P A G H PG HP
Sbjct: 265 PPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHP 310
Score = 32.3 bits (72), Expect = 0.52
Identities = 26/76 (34%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 9 GIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCH---PGQHPLTLFNH 65
G PG PP APG + P A G P P APG H PG HP T H
Sbjct: 273 GPPGPPQLPPPAPGVHPPAPVV--HPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVH 330
Query: 66 SLYCIFMPTLIAIHSP 81
P +H P
Sbjct: 331 PPAPGVHPPAPGVHPP 346
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 34.7 bits (78), Expect = 0.10
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 1 MAVVSGILGIPGRIG--APPRAPGTTAGRGLQAHSPT-----APGATDPTAVPMPAAPG 52
M V G G PG +G PP APG GL H PG P P P+ PG
Sbjct: 816 MLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPG 874
Score = 28.1 bits (61), Expect = 9.7
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 6 GILGIPGRIG--APPRAPG---TTAGRGLQA-----HSPTAPGATDPTAVPMPAAPGCHP 55
G+ G PGR G P APG T+ G + P A G P P PA P P
Sbjct: 788 GLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLP 847
Query: 56 G 56
G
Sbjct: 848 G 848
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 34.3 bits (77), Expect = 0.14
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 5 SGILGIPGRIGAP--PRAPGTTAGRGLQAHSPTAPGATDPTAVP-MPAAPGCH 54
SG+ G+PG+ GAP P PG+ G+ +P PG+ P P +P G H
Sbjct: 857 SGLPGLPGQQGAPGIPGFPGSKGEMGVMG-TPGQPGSPGPVGAPGLPGEKGDH 908
Score = 32.0 bits (71), Expect = 0.67
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 4 VSGILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPG 56
V+G++GIPG PP PG G + A G T P P P P PG
Sbjct: 1385 VTGLVGIPG----PPGIPGFDGAPGQKGEMGPA-GPTGPRGFPGPPGPDGLPG 1432
Score = 28.5 bits (62), Expect = 7.4
Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 6 GILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLT 61
G GIPG G PP PG G PG T P P P P GQ L+
Sbjct: 176 GFPGIPGTPG-PPGLPGLQGPVG-------PPGFTGPPGPPGPPGPPGEKGQMGLS 223
>gi|61966733 hypothetical protein LOC388199 [Homo sapiens]
Length = 402
Score = 34.3 bits (77), Expect = 0.14
Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 18/92 (19%)
Query: 3 VVSGI-LGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLT 61
V +GI L PG P T R + P APGA P+PA PG PG
Sbjct: 326 VAAGIWLVEPGEAAQDPATRRTAPPRRTASPEPPAPGA------PLPACPGRIPGA---- 375
Query: 62 LFNHSLYCIFMPTLIAIHSPPITYIQLGWASR 93
F P + SP + + GW+ R
Sbjct: 376 -------ARFGPRSCPLGSPAVLAVTTGWSHR 400
>gi|61744471 low density lipoprotein receptor-related protein 8
isoform 1 precursor [Homo sapiens]
Length = 963
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 14 IGAPPRAPGTTAGRGL-QAHSPTAPGATD--PTAVPMPAAPGCHPGQHPLTLFNHS 66
+ A RAPGTT R Q HS P T P++V +P AP P NHS
Sbjct: 754 VPATTRAPGTTVHRSTYQNHSTETPSLTAAVPSSVSVPRAPSISPSTLSPATSNHS 809
>gi|66082554 low density lipoprotein receptor-related protein 8
isoform 2 precursor [Homo sapiens]
Length = 793
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 14 IGAPPRAPGTTAGRGL-QAHSPTAPGATD--PTAVPMPAAPGCHPGQHPLTLFNHS 66
+ A RAPGTT R Q HS P T P++V +P AP P NHS
Sbjct: 584 VPATTRAPGTTVHRSTYQNHSTETPSLTAAVPSSVSVPRAPSISPSTLSPATSNHS 639
>gi|65301119 low density lipoprotein receptor-related protein 8
isoform 4 precursor [Homo sapiens]
Length = 904
Score = 33.9 bits (76), Expect = 0.18
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 14 IGAPPRAPGTTAGRGL-QAHSPTAPGATD--PTAVPMPAAPGCHPGQHPLTLFNHS 66
+ A RAPGTT R Q HS P T P++V +P AP P NHS
Sbjct: 754 VPATTRAPGTTVHRSTYQNHSTETPSLTAAVPSSVSVPRAPSISPSTLSPATSNHS 809
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 33.9 bits (76), Expect = 0.18
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 18 PRAPGTTAGRG--LQAHSPTAPGATDPTAVPMPAAPGCHPGQHP 59
P APGT + A +P AP A P A P PAAP P P
Sbjct: 231 PAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPP 274
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 33.5 bits (75), Expect = 0.23
Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 15 GAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPA---APGCHPGQHP 59
G P +PG T G P AP P P PA PG P QHP
Sbjct: 8 GRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHP 55
Score = 28.9 bits (63), Expect = 5.7
Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 17/102 (16%)
Query: 126 PKCMINLDPSHCSNNGTVRLICKLGECPGGPGWCRKATPDRSPRSLLSKPEGTVPRPHPV 185
P+ + S C GT P G C + P SP PEG P
Sbjct: 71 PRGRLRSRDSSCGRPGTPGAASTAKGSPNGE--CGRGEPQCSPAG----PEGPARGPKVS 124
Query: 186 FTCRQAGAGARGILLPAPLCHSCEGHVPIVKDEEPGPL-DPR 226
F+CR A +G PAP G EE GP +PR
Sbjct: 125 FSCRGAASG------PAP----GPGPAEEAGSEEAGPAGEPR 156
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 33.5 bits (75), Expect = 0.23
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 2 AVVSGILGIPGRIGAPPRAPGTTAGRGLQAHS-PTAPGATD----PTAVPMPAAPGCHPG 56
A +G +G+PGR G P PG +G P P D P +P PA P PG
Sbjct: 1077 AGTAGPIGLPGRPG-PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPG 1135
Query: 57 Q 57
+
Sbjct: 1136 E 1136
Score = 30.4 bits (67), Expect = 2.0
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 6 GILGIPGRIG--APPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPG 56
G G PG IG PP G RGL + +PGA +P PA P PG
Sbjct: 1462 GEKGHPGLIGLIGPPGEQGEKGDRGLPG-TQGSPGAKGDGGIPGPAGPLGPPG 1513
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 33.5 bits (75), Expect = 0.23
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 2 AVVSGILGIPGRIGAPPRAPGTTAGRGLQAHS-PTAPGATD----PTAVPMPAAPGCHPG 56
A +G +G+PGR G P PG +G P P D P +P PA P PG
Sbjct: 1026 AGTAGPIGLPGRPG-PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPG 1084
Query: 57 Q 57
+
Sbjct: 1085 E 1085
Score = 30.4 bits (67), Expect = 2.0
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 6 GILGIPGRIG--APPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPG 56
G G PG IG PP G RGL + +PGA +P PA P PG
Sbjct: 1411 GEKGHPGLIGLIGPPGEQGEKGDRGLPG-TQGSPGAKGDGGIPGPAGPLGPPG 1462
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 33.5 bits (75), Expect = 0.23
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 2 AVVSGILGIPGRIGAPPRAPGTTAGRGLQAHS-PTAPGATD----PTAVPMPAAPGCHPG 56
A +G +G+PGR G P PG +G P P D P +P PA P PG
Sbjct: 1065 AGTAGPIGLPGRPG-PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPG 1123
Query: 57 Q 57
+
Sbjct: 1124 E 1124
Score = 30.4 bits (67), Expect = 2.0
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 6 GILGIPGRIG--APPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPG 56
G G PG IG PP G RGL + +PGA +P PA P PG
Sbjct: 1450 GEKGHPGLIGLIGPPGEQGEKGDRGLPG-TQGSPGAKGDGGIPGPAGPLGPPG 1501
>gi|239753972 PREDICTED: hypothetical protein [Homo sapiens]
Length = 298
Score = 33.5 bits (75), Expect = 0.23
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 17 PPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLTLFNHSLYCIFM---P 73
PP P T H PT +T P + +P P HP HP F H L +F+ P
Sbjct: 91 PPIHPSTNPPIHPSTH-PTIHPSTHPPSTYLPIHPSAHPLIHP---FIHPLTHLFIHPPP 146
Query: 74 TLIAIHSPPITYIQL 88
T IH P + I L
Sbjct: 147 THSPIHPPTHSSIHL 161
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 33.5 bits (75), Expect = 0.23
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 5 SGILGIPGRIGAPPRAPGTTAGRGLQAHS-----PTAPGATDPTAVPMPAAPG 52
+G G+PG++G PP PG G++ P PG P+ + +P PG
Sbjct: 125 AGPPGLPGKVG-PPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPG 176
Score = 29.3 bits (64), Expect = 4.4
Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 6 GILGIPGRIGAPPRA----PGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPG 56
G+ G PG G P PGT G P +PG T P P P P PG
Sbjct: 481 GLKGEPGLPGPPGEGRAGEPGTAGPTGPPG-VPGSPGITGPPGPPGPPGPPGAPG 534
Score = 28.9 bits (63), Expect = 5.7
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 8 LGIPGRIGAP-PRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPG 52
+G+PG G P P+ P G + + PG PT MP PG
Sbjct: 280 VGVPGAAGLPGPQGPSGAKG---EPGTRGPPGLIGPTGYGMPGLPG 322
>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
Length = 920
Score = 33.5 bits (75), Expect = 0.23
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 8 LGIPGRIGAPPRAPGTTAGR---GLQAHSPTAPGATDPTAVPMPAAP-GCHPG 56
+ IP + PP A G A + G A + AP A+DP + P+ A+P HPG
Sbjct: 696 VAIPDSVLTPPGADGAAARKTQFGASATAALAPVASDPLSPPLSASPRDKHPG 748
>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
Length = 901
Score = 33.5 bits (75), Expect = 0.23
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 8 LGIPGRIGAPPRAPGTTAGR---GLQAHSPTAPGATDPTAVPMPAAP-GCHPG 56
+ IP + PP A G A + G A + AP A+DP + P+ A+P HPG
Sbjct: 677 VAIPDSVLTPPGADGAAARKTQFGASATAALAPVASDPLSPPLSASPRDKHPG 729
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 32.7 bits (73), Expect = 0.39
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 11 PGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPG-----QHPLTL 62
P P A TA G S AP T A+P PA PG PG HP+ L
Sbjct: 43 PASSSDPAAAAAATAAPGQTPASAQAPAQTPAPALPGPALPGPFPGGRVVRLHPVIL 99
Score = 28.1 bits (61), Expect = 9.7
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 11 PGRIGAPPRAPGTTAGRGLQAHSPTAPGATD-----PTAVPMPAAPG-CHPGQHP 59
P P AP +++ A + APG T P P PA PG PG P
Sbjct: 33 PAAAPVPAAAPASSSDPAAAAAATAAPGQTPASAQAPAQTPAPALPGPALPGPFP 87
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 32.7 bits (73), Expect = 0.39
Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 6 GILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLTLFNH 65
G GIPG PP APGT GL+ P PG P P A PG PG L F
Sbjct: 716 GFPGIPG----PPGAPGTPGRIGLEG-PPGPPGFPGPKGEPGFALPG-PPGPPGLPGFKG 769
Query: 66 SL 67
+L
Sbjct: 770 AL 771
Score = 29.6 bits (65), Expect = 3.3
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 14/64 (21%)
Query: 6 GILGIPGRIGAP-----------PRAPGTTAGRGLQAHS--PTAPGATDPTAVPMPAAPG 52
G LGIPGR G P P PG T +G + P PG DP + G
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967
Query: 53 CHPG 56
PG
Sbjct: 968 -EPG 970
Score = 29.6 bits (65), Expect = 3.3
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 7 ILGIPGRIGAP--PRAPGTTAGRGLQA--HSPTAPGATDPTAVPMPAAPGCHPG 56
+LG G G P P PG + +G Q P PG + +P P P +PG
Sbjct: 959 LLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPG 1012
Score = 29.6 bits (65), Expect = 3.3
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 6 GILGIPGRIGAP--PRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQ 57
G+ G PG G P P PGT G + S PG P P G HPGQ
Sbjct: 1107 GLPGTPGAKGQPGLPGFPGTPGPPGPKGISGP-PGNPGLPGEPGPVGGGGHPGQ 1159
Score = 28.9 bits (63), Expect = 5.7
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 16/65 (24%)
Query: 9 GIPGRIG---------APPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHP 59
G+PG G PP PG +GL PG P +P P P PG++
Sbjct: 1366 GLPGPSGQSIIIKGDAGPPGIPGQPGLKGL-------PGPQGPQGLPGPTGPPGDPGRNG 1418
Query: 60 LTLFN 64
L F+
Sbjct: 1419 LPGFD 1423
Score = 28.1 bits (61), Expect = 9.7
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 6 GILGIPGRIG--APPRAPGTTAGRGLQAHS--------PTAPGATDPTAVPMPAAPGCHP 55
G+ G+PG G PP G GL P PG P+ VP A P P
Sbjct: 1297 GLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEP 1356
Query: 56 G 56
G
Sbjct: 1357 G 1357
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 32.7 bits (73), Expect = 0.39
Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 6 GILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLTLFNH 65
G GIPG PP APGT GL+ P PG P P A PG PG L F
Sbjct: 716 GFPGIPG----PPGAPGTPGRIGLEG-PPGPPGFPGPKGEPGFALPG-PPGPPGLPGFKG 769
Query: 66 SL 67
+L
Sbjct: 770 AL 771
Score = 29.6 bits (65), Expect = 3.3
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 14/64 (21%)
Query: 6 GILGIPGRIGAP-----------PRAPGTTAGRGLQAHS--PTAPGATDPTAVPMPAAPG 52
G LGIPGR G P P PG T +G + P PG DP + G
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967
Query: 53 CHPG 56
PG
Sbjct: 968 -EPG 970
Score = 29.6 bits (65), Expect = 3.3
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 7 ILGIPGRIGAP--PRAPGTTAGRGLQA--HSPTAPGATDPTAVPMPAAPGCHPG 56
+LG G G P P PG + +G Q P PG + +P P P +PG
Sbjct: 959 LLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPG 1012
Score = 29.6 bits (65), Expect = 3.3
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 6 GILGIPGRIGAP--PRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQ 57
G+ G PG G P P PGT G + S PG P P G HPGQ
Sbjct: 1107 GLPGTPGAKGQPGLPGFPGTPGPPGPKGISGP-PGNPGLPGEPGPVGGGGHPGQ 1159
Score = 28.9 bits (63), Expect = 5.7
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 16/65 (24%)
Query: 9 GIPGRIG---------APPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHP 59
G+PG G PP PG +GL PG P +P P P PG++
Sbjct: 1360 GLPGPSGQSIIIKGDAGPPGIPGQPGLKGL-------PGPQGPQGLPGPTGPPGDPGRNG 1412
Query: 60 LTLFN 64
L F+
Sbjct: 1413 LPGFD 1417
Score = 28.1 bits (61), Expect = 9.7
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 6 GILGIPGRIG--APPRAPGTTAGRGLQAHS--------PTAPGATDPTAVPMPAAPGCHP 55
G+ G+PG G PP G GL P PG P+ VP A P P
Sbjct: 1291 GLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEP 1350
Query: 56 G 56
G
Sbjct: 1351 G 1351
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 32.7 bits (73), Expect = 0.39
Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 6 GILGIPGRIGAPPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHPLTLFNH 65
G GIPG PP APGT GL+ P PG P P A PG PG L F
Sbjct: 716 GFPGIPG----PPGAPGTPGRIGLEG-PPGPPGFPGPKGEPGFALPG-PPGPPGLPGFKG 769
Query: 66 SL 67
+L
Sbjct: 770 AL 771
Score = 29.6 bits (65), Expect = 3.3
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 14/64 (21%)
Query: 6 GILGIPGRIGAP-----------PRAPGTTAGRGLQAHS--PTAPGATDPTAVPMPAAPG 52
G LGIPGR G P P PG T +G + P PG DP + G
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967
Query: 53 CHPG 56
PG
Sbjct: 968 -EPG 970
Score = 29.6 bits (65), Expect = 3.3
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 7 ILGIPGRIGAP--PRAPGTTAGRGLQA--HSPTAPGATDPTAVPMPAAPGCHPG 56
+LG G G P P PG + +G Q P PG + +P P P +PG
Sbjct: 959 LLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPG 1012
Score = 29.6 bits (65), Expect = 3.3
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 6 GILGIPGRIGAP--PRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQ 57
G+ G PG G P P PGT G + S PG P P G HPGQ
Sbjct: 1107 GLPGTPGAKGQPGLPGFPGTPGPPGPKGISGP-PGNPGLPGEPGPVGGGGHPGQ 1159
Score = 28.9 bits (63), Expect = 5.7
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 16/65 (24%)
Query: 9 GIPGRIG---------APPRAPGTTAGRGLQAHSPTAPGATDPTAVPMPAAPGCHPGQHP 59
G+PG G PP PG +GL PG P +P P P PG++
Sbjct: 1363 GLPGPSGQSIIIKGDAGPPGIPGQPGLKGL-------PGPQGPQGLPGPTGPPGDPGRNG 1415
Query: 60 LTLFN 64
L F+
Sbjct: 1416 LPGFD 1420
Score = 28.1 bits (61), Expect = 9.7
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 6 GILGIPGRIG--APPRAPGTTAGRGLQAHS--------PTAPGATDPTAVPMPAAPGCHP 55
G+ G+PG G PP G GL P PG P+ VP A P P
Sbjct: 1294 GLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEP 1353
Query: 56 G 56
G
Sbjct: 1354 G 1354
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,810,211
Number of Sequences: 37866
Number of extensions: 967979
Number of successful extensions: 4734
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 4408
Number of HSP's gapped (non-prelim): 540
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.