Guide to the Human Genome
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Name: LOC100127989 Sequence: fasta or formatted (297aa) NCBI GI: 169164745
Description:

PREDICTED: similar to hCG2014450

Not currently referenced in the text

Other entries for this name:
alt mRNA {297aa} PREDICTED: hypothetical protein LOC100127989
alt prot {297aa} PREDICTED: similar to hCG2014450
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         30           2
 C cysteine            4.7         14           1
 D aspartate           3.4         10           2
 E glutamate           4.4         13           2
 F phenylalanine       2.0          6           1
 G glycine             8.8         26           2
 H histidine           3.7         11           1
 I isoleucine          5.1         15           1
 K lysine              2.7          8           1
 L leucine             8.8         26           2
 M methionine          1.3          4           1
 N asparagine          2.4          7           2
 P proline            12.5         37           2
 Q glutamine           3.4         10           2
 R arginine            6.4         19           2
 S serine              7.1         21           2
 T threonine           5.4         16           2
 V valine              5.4         16           2
 W tryptophan          2.0          6           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2014450 
LOC100127989          1.000   PREDICTED: hypothetical protein LOC100127989 
LOC100127989          0.992   PREDICTED: similar to hCG2014450 
LOC100133659          0.560   PREDICTED: similar to mediator complex subunit 15 [...
MED15                 0.161   mediator complex subunit 15 isoform a 
MED15                 0.161   mediator complex subunit 15 isoform b 
LOC100294312          0.020   PREDICTED: hypothetical protein XP_002344082 
LOC100294220          0.020   PREDICTED: hypothetical protein 
LOC100294184          0.020   PREDICTED: hypothetical protein 
COL3A1                0.018   collagen type III alpha 1 preproprotein 
SF3A2                 0.016   splicing factor 3a, subunit 2 
COL17A1               0.016   alpha 1 type XVII collagen 
COL4A1                0.015   alpha 1 type IV collagen preproprotein 
LOC388199             0.015   hypothetical protein LOC388199 
LRP8                  0.015   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.015   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.015   low density lipoprotein receptor-related protein 8 i...
TAF4                  0.015   TBP-associated factor 4 
HCN2                  0.013   hyperpolarization activated cyclic nucleotide-gated...
COL11A1               0.013   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.013   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.013   alpha 1 type XI collagen isoform A preproprotein [Ho...
LOC100293557          0.013   PREDICTED: hypothetical protein 
COL8A2                0.013   collagen, type VIII, alpha 2 
NPAS3                 0.013   neuronal PAS domain protein 3 isoform 2 
NPAS3                 0.013   neuronal PAS domain protein 3 isoform 1 
EIF3F                 0.013   eukaryotic translation initiation factor 3, subunit 5...
COL4A5                0.013   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.013   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.013   type IV collagen alpha 5 isoform 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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