Guide to the Human Genome
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Name: LOC100294184 Sequence: fasta or formatted (138aa) NCBI GI: 239740731
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         10           2
 C cysteine            0.7          1           1
 D aspartate           2.2          3           1
 E glutamate           3.6          5           1
 F phenylalanine       2.2          3           1
 G glycine             9.4         13           1
 H histidine           3.6          5           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine            14.5         20           2
 M methionine          0.7          1           1
 N asparagine          0.0          0           0
 P proline            20.3         28           3
 Q glutamine           3.6          5           1
 R arginine            5.8          8           2
 S serine             11.6         16           3
 T threonine           2.9          4           1
 V valine              6.5          9           2
 W tryptophan          4.3          6           2
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294312          1.000   PREDICTED: hypothetical protein XP_002344082 
LOC100294220          1.000   PREDICTED: hypothetical protein 
FMN1                  0.073   formin 1 
MAP1A                 0.065   microtubule-associated protein 1A 
SFPQ                  0.062   splicing factor proline/glutamine rich (polypyrimidin...
INF2                  0.058   inverted formin 2 isoform 2 
INF2                  0.058   inverted formin 2 isoform 1 
WAS                   0.055   Wiskott-Aldrich syndrome protein 
SGIP1                 0.055   SH3-domain GRB2-like (endophilin) interacting prote...
PPRC1                 0.055   peroxisome proliferator-activated receptor gamma, co...
MLL2                  0.055   myeloid/lymphoid or mixed-lineage leukemia 2 
SF3B4                 0.055   splicing factor 3b, subunit 4 
NCCRP1                0.055   non-specific cytotoxic cell receptor protein 1 homol...
VWCE                  0.051   von Willebrand factor C and EGF domains 
LOC100288037          0.051   PREDICTED: hypothetical protein XP_002342193 
DIAPH1                0.047   diaphanous 1 isoform 2 
DIAPH1                0.047   diaphanous 1 isoform 1 
WASF2                 0.047   WAS protein family, member 2 
COL8A2                0.047   collagen, type VIII, alpha 2 
IQSEC2                0.047   IQ motif and Sec7 domain 2 isoform1 
PTPN23                0.047   protein tyrosine phosphatase, non-receptor type 23 [...
LOC100129307          0.044   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100131107          0.044   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100129307          0.044   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100131107          0.044   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
LOC100129307          0.044   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100131107          0.044   PREDICTED: UPF0607 protein ENSP00000383783-like [Ho...
SMARCA2               0.044   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.044   SWI/SNF-related matrix-associated actin-dependent re...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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