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Search of human proteins with 169163618
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169163618 PREDICTED: hypothetical protein [Homo sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169163618 PREDICTED: hypothetical protein [Homo sapiens] 323 4e-89
gi|169164180 PREDICTED: hypothetical protein [Homo sapiens] 323 4e-89
gi|169163382 PREDICTED: hypothetical protein [Homo sapiens] 323 4e-89
gi|169166217 PREDICTED: hypothetical protein [Homo sapiens] 42 3e-04
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 39 0.001
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 39 0.001
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 39 0.001
gi|13994190 frizzled 8 [Homo sapiens] 39 0.002
gi|23510368 homeobox D11 [Homo sapiens] 37 0.005
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 37 0.007
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 36 0.012
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 36 0.012
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 36 0.012
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 36 0.012
gi|68800350 interleukin-1 receptor-associated kinase 1 isoform 3... 36 0.015
gi|68800343 interleukin-1 receptor-associated kinase 1 isoform 2... 36 0.015
gi|68800243 interleukin-1 receptor-associated kinase 1 isoform 1... 36 0.015
gi|57864582 hornerin [Homo sapiens] 35 0.020
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 35 0.026
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 35 0.026
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 35 0.026
gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens] 35 0.034
gi|4507161 SRY-box 11 [Homo sapiens] 35 0.034
gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens] 34 0.044
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 34 0.058
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 34 0.058
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 33 0.075
gi|239749065 PREDICTED: hypothetical protein XP_002346903 [Homo ... 33 0.075
gi|239508743 PREDICTED: hypothetical protein [Homo sapiens] 33 0.075
gi|13775236 scratch [Homo sapiens] 33 0.075
>gi|169163618 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 323 bits (828), Expect = 4e-89
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP 60
MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP
Sbjct: 1 MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP 60
Query: 61 DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR 120
DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR
Sbjct: 61 DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR 120
Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155
GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG
Sbjct: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155
>gi|169164180 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 323 bits (828), Expect = 4e-89
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP 60
MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP
Sbjct: 1 MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP 60
Query: 61 DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR 120
DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR
Sbjct: 61 DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR 120
Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155
GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG
Sbjct: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155
>gi|169163382 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 323 bits (828), Expect = 4e-89
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP 60
MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP
Sbjct: 1 MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP 60
Query: 61 DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR 120
DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR
Sbjct: 61 DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR 120
Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155
GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG
Sbjct: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155
>gi|169166217 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 41.6 bits (96), Expect = 3e-04
Identities = 46/153 (30%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 4 PSHLSTLGREPAASGQSRLLVRPGQVAGPQA--AFYSSFNKMDSRGPNQTWASRQRRRPD 61
PS ++ AA +R RP P+A A + F+ P++ S R P
Sbjct: 8 PSAAASAAGAAAAVAAARSWGRPAPWLAPRASEALWYCFSTPAGVRPSEEQDSASRPSPF 67
Query: 62 AL--EGLLASSRPP-----IPRSPGDRGQAG--LGGVGTHTSASRKAPGEPQLDVTGGAE 112
L G L++ RP +PR P RG G + G +A+ PG Q G+
Sbjct: 68 VLLQSGRLSTKRPERQASLLPR-PAPRGSTGAQVWWAGPGAAAAPPPPGVRQCSALAGSS 126
Query: 113 HGSGPEARGAPAWGGASGASRDAARQPASGCGW 145
P G GG SG++R A R+P SG GW
Sbjct: 127 VPWFPGGGG----GGGSGSARRALRKP-SGGGW 154
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 39.3 bits (90), Expect = 0.001
Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 60 PDALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEA 119
P L G+ P P PG GQ GL G+ + PG P LDV G P
Sbjct: 812 PPGLPGIGVQGPPGPPGIPGPIGQPGLHGI----PGEKGDPGPPGLDVPGPPGERGSPGI 867
Query: 120 RGAPAWGGASGASRDAARQPASG 142
GAP G G+ + ASG
Sbjct: 868 PGAPGPIGPPGSPGLPGKAGASG 890
Score = 30.4 bits (67), Expect = 0.64
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 71 RPPIPRSPGDRGQAGLGGVGTHTSASRKA----PGEPQLDVTGGAEHGSGPEARGAPAWG 126
+P +P PG +G+ G+ G+G K PG P T G GP G P +
Sbjct: 688 QPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPP--GPPGFP 745
Query: 127 GASG 130
G G
Sbjct: 746 GPKG 749
Score = 30.4 bits (67), Expect = 0.64
Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 12/85 (14%)
Query: 72 PPIPRSPGDRGQAGLGGV-GTHTSASRKA----PGEPQLDVTGGAEHGSG-------PEA 119
P +P +PG +GQ GL G GT K PG P L G G G P
Sbjct: 1106 PGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGE 1165
Query: 120 RGAPAWGGASGASRDAARQPASGCG 144
+G P G G + G G
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFG 1190
Score = 27.7 bits (60), Expect = 4.1
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 65 GLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAP 123
G P P PG+RGQ G G PG P LD GA GP P
Sbjct: 389 GAAVMGPPGPPGFPGERGQKGDEG-----PPGISIPGPPGLDGQPGAPGLPGPPGPAGP 442
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 39.3 bits (90), Expect = 0.001
Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 60 PDALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEA 119
P L G+ P P PG GQ GL G+ + PG P LDV G P
Sbjct: 812 PPGLPGIGVQGPPGPPGIPGPIGQPGLHGI----PGEKGDPGPPGLDVPGPPGERGSPGI 867
Query: 120 RGAPAWGGASGASRDAARQPASG 142
GAP G G+ + ASG
Sbjct: 868 PGAPGPIGPPGSPGLPGKAGASG 890
Score = 30.4 bits (67), Expect = 0.64
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 71 RPPIPRSPGDRGQAGLGGVGTHTSASRKA----PGEPQLDVTGGAEHGSGPEARGAPAWG 126
+P +P PG +G+ G+ G+G K PG P T G GP G P +
Sbjct: 688 QPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPP--GPPGFP 745
Query: 127 GASG 130
G G
Sbjct: 746 GPKG 749
Score = 30.4 bits (67), Expect = 0.64
Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 12/85 (14%)
Query: 72 PPIPRSPGDRGQAGLGGV-GTHTSASRKA----PGEPQLDVTGGAEHGSG-------PEA 119
P +P +PG +GQ GL G GT K PG P L G G G P
Sbjct: 1106 PGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGE 1165
Query: 120 RGAPAWGGASGASRDAARQPASGCG 144
+G P G G + G G
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFG 1190
Score = 27.7 bits (60), Expect = 4.1
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 65 GLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAP 123
G P P PG+RGQ G G PG P LD GA GP P
Sbjct: 389 GAAVMGPPGPPGFPGERGQKGDEG-----PPGISIPGPPGLDGQPGAPGLPGPPGPAGP 442
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 39.3 bits (90), Expect = 0.001
Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 60 PDALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEA 119
P L G+ P P PG GQ GL G+ + PG P LDV G P
Sbjct: 812 PPGLPGIGVQGPPGPPGIPGPIGQPGLHGI----PGEKGDPGPPGLDVPGPPGERGSPGI 867
Query: 120 RGAPAWGGASGASRDAARQPASG 142
GAP G G+ + ASG
Sbjct: 868 PGAPGPIGPPGSPGLPGKAGASG 890
Score = 30.4 bits (67), Expect = 0.64
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 71 RPPIPRSPGDRGQAGLGGVGTHTSASRKA----PGEPQLDVTGGAEHGSGPEARGAPAWG 126
+P +P PG +G+ G+ G+G K PG P T G GP G P +
Sbjct: 688 QPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPP--GPPGFP 745
Query: 127 GASG 130
G G
Sbjct: 746 GPKG 749
Score = 30.4 bits (67), Expect = 0.64
Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 12/85 (14%)
Query: 72 PPIPRSPGDRGQAGLGGV-GTHTSASRKA----PGEPQLDVTGGAEHGSG-------PEA 119
P +P +PG +GQ GL G GT K PG P L G G G P
Sbjct: 1106 PGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGE 1165
Query: 120 RGAPAWGGASGASRDAARQPASGCG 144
+G P G G + G G
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFG 1190
Score = 27.7 bits (60), Expect = 4.1
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 65 GLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAP 123
G P P PG+RGQ G G PG P LD GA GP P
Sbjct: 389 GAAVMGPPGPPGFPGERGQKGDEG-----PPGISIPGPPGLDGQPGAPGLPGPPGPAGP 442
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 38.5 bits (88), Expect = 0.002
Identities = 24/59 (40%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 97 RKAPGEPQLDVTGGAEHGSGPEARGAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155
R P P G+ HG P AR GG G DAA PA G G GG+ RP G
Sbjct: 166 RLPPPPPGEQPPSGSGHGRPPGARPPHRGGGRGGGGGDAAAPPARG-GGGGGKARPPGG 223
Score = 30.0 bits (66), Expect = 0.83
Identities = 23/79 (29%), Positives = 27/79 (34%), Gaps = 9/79 (11%)
Query: 68 ASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAWGG 127
A+ PP P G+ G G + P GG G G +A PA GG
Sbjct: 159 AAPSPPRRLPPPPPGEQPPSGSGHGRPPGARPPHR------GGGRGGGGGDAAAPPARGG 212
Query: 128 ASGASRDAARQPASGCGWC 146
G AR P G C
Sbjct: 213 GGGGK---ARPPGGGAAPC 228
Score = 26.9 bits (58), Expect = 7.0
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPE 153
GAP GGA GA AA A+G G G R E
Sbjct: 343 GAPGAGGAGGAGGAAAGAGAAGAGAGGPGGRGE 375
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 37.4 bits (85), Expect = 0.005
Identities = 40/128 (31%), Positives = 48/128 (37%), Gaps = 29/128 (22%)
Query: 26 PGQVAGPQAA---FYSS----------FNKMDSRGPNQTWASRQRRRPDALEGLLASSRP 72
PG GP A FYS+ F++ P +A Q P A P
Sbjct: 151 PGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPPPPPA---------P 201
Query: 73 PIPRSPGDRGQAGLGGVGTHTSASRKA-PG-EPQLDVTGGAEHGSGPEARGAPAWGGASG 130
P P D+G G G S KA PG EP+ GA GSG + G P GA
Sbjct: 202 PQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPK-----GAAEGSGGDGEGPPGEAGAEK 256
Query: 131 ASRDAARQ 138
+S A Q
Sbjct: 257 SSSAVAPQ 264
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 37.0 bits (84), Expect = 0.007
Identities = 34/102 (33%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 61 DALEGLLASSRPPIPR-SPGDRGQAGLGGVGTHTSA-----SRKAPGEPQLDVTGGAEHG 114
D + GL PP P +PGD+G++G G T A R PG P G
Sbjct: 760 DGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGA 819
Query: 115 SG-PEARGAPAWGGASG-ASRDAARQPASGCGWCGGQRRPEA 154
G P A+G P GA G A PA G G P A
Sbjct: 820 DGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGA 861
Score = 33.9 bits (76), Expect = 0.058
Identities = 31/84 (36%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 72 PPIPRSPGDRGQAGL-GGVGTHTSASRK-APGEPQLDVTGGAEHGSGPEA-RGAPAWGGA 128
P + PG+RG AGL G G A K A G P D G GP GAP G
Sbjct: 724 PGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGE 783
Query: 129 SGASRDAARQPASGCGWCGGQRRP 152
SG S A A G G+ P
Sbjct: 784 SGPSGPAGPTGARGAPGDRGEPGP 807
Score = 31.2 bits (69), Expect = 0.37
Identities = 34/101 (33%), Positives = 38/101 (37%), Gaps = 14/101 (13%)
Query: 69 SSRPPIPRSPGDRGQAGLGG-VGTH-------TSASRKAPGEP-QLDVTGGAEHGSGPEA 119
S P P S GD G G G VG R A GEP + G GP +
Sbjct: 433 SGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS 492
Query: 120 RGAPAWGGASGASRDAARQ----PASGCGWCGGQRRP-EAG 155
RG P G +G A + PA G G RP EAG
Sbjct: 493 RGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAG 533
Score = 30.4 bits (67), Expect = 0.64
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 71 RPPIPRSPGDRGQAGL-------GGVGTHTSA-SRKAPGEPQLDVTGGAEHGSGPEARGA 122
RP P PG RGQAG+ G G A R PG P G + +G A+G
Sbjct: 564 RPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAG--AQGP 621
Query: 123 PAWGGASGASRDAARQPASGCGWCG 147
P G A A + PA G+ G
Sbjct: 622 P--GPAGPAGERGEQGPAGSPGFQG 644
Score = 28.5 bits (62), Expect = 2.4
Identities = 36/140 (25%), Positives = 42/140 (30%), Gaps = 6/140 (4%)
Query: 4 PSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPDAL 63
PS L P A G PG+ P A+ M RGP
Sbjct: 183 PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGAS-----GPMGPRGPPGPPGKNGDDGEAGK 237
Query: 64 EGLLASSRPPIPRSP-GDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGA 122
G PP P+ G G AGL G+ H S + G P GA
Sbjct: 238 PGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGA 297
Query: 123 PAWGGASGASRDAARQPASG 142
P G G + R A G
Sbjct: 298 PGQMGPRGLPGERGRPGAPG 317
Score = 27.7 bits (60), Expect = 4.1
Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 72 PPIPRSPGDRGQAGLGGV--GTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAWGGAS 129
P P + G +G+AG G R PG P G A P A G P GA+
Sbjct: 343 PGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPP--GPAGAAGPAGNPGADGQPGAKGAN 400
Query: 130 GASRDAARQPASGCGWCGGQRRP 152
GA A G G + P
Sbjct: 401 GAPGIAGAPGFPGARGPSGPQGP 423
Score = 27.3 bits (59), Expect = 5.4
Identities = 20/66 (30%), Positives = 23/66 (34%)
Query: 77 SPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAWGGASGASRDAA 136
+PG G GL G A A TG A G P + GA GA +A
Sbjct: 297 APGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAG 356
Query: 137 RQPASG 142
Q G
Sbjct: 357 PQGPRG 362
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 36.2 bits (82), Expect = 0.012
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 46 RGPNQTWASRQRRRPDALEGLLASSRPPIPRSP-GDRGQAGLGGV----GTHTSASRKAP 100
RGP + + + Q + + G PP PR G +G +G GV G+ R AP
Sbjct: 341 RGPTEYYDTYQEKGDEGTPG------PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAP 394
Query: 101 GEPQLDVTGGAEHGSGPEARGAPAWGGASGA 131
G P L + G G +A G P G +G+
Sbjct: 395 GWPGLKGSKGERGRPGKDAMGTPGSPGCAGS 425
Score = 30.8 bits (68), Expect = 0.49
Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 60 PDALEGLLASSRPPIPRSPGDRGQAGLGGV----GTHTSASRK-APGEPQLDVTGGAEHG 114
P GLL + P IP PG G GL GV G +A K +PG P TG
Sbjct: 468 PKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSP--GNTGLPGFP 525
Query: 115 SGPEARGAPAWGGASG 130
P A+G P G G
Sbjct: 526 GFPGAQGDPGLKGEKG 541
Score = 30.0 bits (66), Expect = 0.83
Identities = 23/66 (34%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 62 ALEGLLASSRPP----IPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGP 117
AL G PP P SPG G AG G G GEP L T G GP
Sbjct: 587 ALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQ--------GEPGLQGTQGVPGAPGP 638
Query: 118 EARGAP 123
P
Sbjct: 639 PGEAGP 644
Score = 26.9 bits (58), Expect = 7.0
Identities = 43/170 (25%), Positives = 53/170 (31%), Gaps = 44/170 (25%)
Query: 3 PPSHLSTLGRE--PAASGQSRLLVRPGQ-----------------VAGPQA--AFYSSFN 41
PP HL G E P + G L +PG + GP F S
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPG 1149
Query: 42 KMDSRGPNQTWASRQRRRPDALEGLLASSRPPIPR-------SPGDRGQAGLGGVGTHTS 94
M RG GLL + PP PR + GDRG G G+
Sbjct: 1150 PMGIRGDQGRDGIPGPAGEKGETGLLRA--PPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207
Query: 95 ASRKA--------------PGEPQLDVTGGAEHGSGPEARGAPAWGGASG 130
A A PG P + G + P +RG+P G G
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPG 1257
Score = 26.6 bits (57), Expect = 9.2
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 64 EGLLASSRPPIPRSPGDRGQAGLGGVG--THTSASRKAPG-EPQLDVTGGAEHGSGPEAR 120
E L + +P PG RGQ G G+ T + PG + +L ++G P
Sbjct: 542 ETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDP 601
Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEA 154
G+P G +G + P G G Q P A
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA 635
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 36.2 bits (82), Expect = 0.012
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 46 RGPNQTWASRQRRRPDALEGLLASSRPPIPRSP-GDRGQAGLGGV----GTHTSASRKAP 100
RGP + + + Q + + G PP PR G +G +G GV G+ R AP
Sbjct: 341 RGPTEYYDTYQEKGDEGTPG------PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAP 394
Query: 101 GEPQLDVTGGAEHGSGPEARGAPAWGGASGA 131
G P L + G G +A G P G +G+
Sbjct: 395 GWPGLKGSKGERGRPGKDAMGTPGSPGCAGS 425
Score = 30.8 bits (68), Expect = 0.49
Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 60 PDALEGLLASSRPPIPRSPGDRGQAGLGGV----GTHTSASRK-APGEPQLDVTGGAEHG 114
P GLL + P IP PG G GL GV G +A K +PG P TG
Sbjct: 468 PKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSP--GNTGLPGFP 525
Query: 115 SGPEARGAPAWGGASG 130
P A+G P G G
Sbjct: 526 GFPGAQGDPGLKGEKG 541
Score = 30.0 bits (66), Expect = 0.83
Identities = 23/66 (34%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 62 ALEGLLASSRPP----IPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGP 117
AL G PP P SPG G AG G G GEP L T G GP
Sbjct: 587 ALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQ--------GEPGLQGTQGVPGAPGP 638
Query: 118 EARGAP 123
P
Sbjct: 639 PGEAGP 644
Score = 26.9 bits (58), Expect = 7.0
Identities = 43/170 (25%), Positives = 53/170 (31%), Gaps = 44/170 (25%)
Query: 3 PPSHLSTLGRE--PAASGQSRLLVRPGQ-----------------VAGPQA--AFYSSFN 41
PP HL G E P + G L +PG + GP F S
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPG 1149
Query: 42 KMDSRGPNQTWASRQRRRPDALEGLLASSRPPIPR-------SPGDRGQAGLGGVGTHTS 94
M RG GLL + PP PR + GDRG G G+
Sbjct: 1150 PMGIRGDQGRDGIPGPAGEKGETGLLRA--PPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207
Query: 95 ASRKA--------------PGEPQLDVTGGAEHGSGPEARGAPAWGGASG 130
A A PG P + G + P +RG+P G G
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPG 1257
Score = 26.6 bits (57), Expect = 9.2
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 64 EGLLASSRPPIPRSPGDRGQAGLGGVG--THTSASRKAPG-EPQLDVTGGAEHGSGPEAR 120
E L + +P PG RGQ G G+ T + PG + +L ++G P
Sbjct: 542 ETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDP 601
Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEA 154
G+P G +G + P G G Q P A
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA 635
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 36.2 bits (82), Expect = 0.012
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 46 RGPNQTWASRQRRRPDALEGLLASSRPPIPRSP-GDRGQAGLGGV----GTHTSASRKAP 100
RGP + + + Q + + G PP PR G +G +G GV G+ R AP
Sbjct: 341 RGPTEYYDTYQEKGDEGTPG------PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAP 394
Query: 101 GEPQLDVTGGAEHGSGPEARGAPAWGGASGA 131
G P L + G G +A G P G +G+
Sbjct: 395 GWPGLKGSKGERGRPGKDAMGTPGSPGCAGS 425
Score = 30.8 bits (68), Expect = 0.49
Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 60 PDALEGLLASSRPPIPRSPGDRGQAGLGGV----GTHTSASRK-APGEPQLDVTGGAEHG 114
P GLL + P IP PG G GL GV G +A K +PG P TG
Sbjct: 468 PKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSP--GNTGLPGFP 525
Query: 115 SGPEARGAPAWGGASG 130
P A+G P G G
Sbjct: 526 GFPGAQGDPGLKGEKG 541
Score = 30.0 bits (66), Expect = 0.83
Identities = 23/66 (34%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 62 ALEGLLASSRPP----IPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGP 117
AL G PP P SPG G AG G G GEP L T G GP
Sbjct: 587 ALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQ--------GEPGLQGTQGVPGAPGP 638
Query: 118 EARGAP 123
P
Sbjct: 639 PGEAGP 644
Score = 26.9 bits (58), Expect = 7.0
Identities = 43/170 (25%), Positives = 53/170 (31%), Gaps = 44/170 (25%)
Query: 3 PPSHLSTLGRE--PAASGQSRLLVRPGQ-----------------VAGPQA--AFYSSFN 41
PP HL G E P + G L +PG + GP F S
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPG 1149
Query: 42 KMDSRGPNQTWASRQRRRPDALEGLLASSRPPIPR-------SPGDRGQAGLGGVGTHTS 94
M RG GLL + PP PR + GDRG G G+
Sbjct: 1150 PMGIRGDQGRDGIPGPAGEKGETGLLRA--PPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207
Query: 95 ASRKA--------------PGEPQLDVTGGAEHGSGPEARGAPAWGGASG 130
A A PG P + G + P +RG+P G G
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPG 1257
Score = 26.6 bits (57), Expect = 9.2
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 64 EGLLASSRPPIPRSPGDRGQAGLGGVG--THTSASRKAPG-EPQLDVTGGAEHGSGPEAR 120
E L + +P PG RGQ G G+ T + PG + +L ++G P
Sbjct: 542 ETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDP 601
Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEA 154
G+P G +G + P G G Q P A
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA 635
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 36.2 bits (82), Expect = 0.012
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 46 RGPNQTWASRQRRRPDALEGLLASSRPPIPRSP-GDRGQAGLGGV----GTHTSASRKAP 100
RGP + + + Q + + G PP PR G +G +G GV G+ R AP
Sbjct: 341 RGPTEYYDTYQEKGDEGTPG------PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAP 394
Query: 101 GEPQLDVTGGAEHGSGPEARGAPAWGGASGA 131
G P L + G G +A G P G +G+
Sbjct: 395 GWPGLKGSKGERGRPGKDAMGTPGSPGCAGS 425
Score = 30.8 bits (68), Expect = 0.49
Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 60 PDALEGLLASSRPPIPRSPGDRGQAGLGGV----GTHTSASRK-APGEPQLDVTGGAEHG 114
P GLL + P IP PG G GL GV G +A K +PG P TG
Sbjct: 468 PKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSP--GNTGLPGFP 525
Query: 115 SGPEARGAPAWGGASG 130
P A+G P G G
Sbjct: 526 GFPGAQGDPGLKGEKG 541
Score = 30.0 bits (66), Expect = 0.83
Identities = 23/66 (34%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 62 ALEGLLASSRPP----IPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGP 117
AL G PP P SPG G AG G G GEP L T G GP
Sbjct: 587 ALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQ--------GEPGLQGTQGVPGAPGP 638
Query: 118 EARGAP 123
P
Sbjct: 639 PGEAGP 644
Score = 26.9 bits (58), Expect = 7.0
Identities = 43/170 (25%), Positives = 53/170 (31%), Gaps = 44/170 (25%)
Query: 3 PPSHLSTLGRE--PAASGQSRLLVRPGQ-----------------VAGPQA--AFYSSFN 41
PP HL G E P + G L +PG + GP F S
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPG 1149
Query: 42 KMDSRGPNQTWASRQRRRPDALEGLLASSRPPIPR-------SPGDRGQAGLGGVGTHTS 94
M RG GLL + PP PR + GDRG G G+
Sbjct: 1150 PMGIRGDQGRDGIPGPAGEKGETGLLRA--PPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207
Query: 95 ASRKA--------------PGEPQLDVTGGAEHGSGPEARGAPAWGGASG 130
A A PG P + G + P +RG+P G G
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPG 1257
Score = 26.6 bits (57), Expect = 9.2
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 64 EGLLASSRPPIPRSPGDRGQAGLGGVG--THTSASRKAPG-EPQLDVTGGAEHGSGPEAR 120
E L + +P PG RGQ G G+ T + PG + +L ++G P
Sbjct: 542 ETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDP 601
Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEA 154
G+P G +G + P G G Q P A
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA 635
>gi|68800350 interleukin-1 receptor-associated kinase 1 isoform 3
[Homo sapiens]
Length = 633
Score = 35.8 bits (81), Expect = 0.015
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 33/140 (23%)
Query: 5 SHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPDALE 64
S++S+ GR + + + L P A QAA + RGPNQ S ++L
Sbjct: 467 SYVSSTGRAHSGAAPWQPLAAPSG-ASAQAA------EQLQRGPNQPVES-----DESLG 514
Query: 65 GLLASSR-----PPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEA 119
GL A+ R P P P +AG PQ D G + GSGP +
Sbjct: 515 GLSAALRSWHLTPSCPLDPAPLREAGC----------------PQGDTAGESSWGSGPGS 558
Query: 120 RGAPAWGGASGASRDAARQP 139
R G A G+S ++ +P
Sbjct: 559 RPTAVEGLALGSSASSSSEP 578
>gi|68800343 interleukin-1 receptor-associated kinase 1 isoform 2
[Homo sapiens]
Length = 682
Score = 35.8 bits (81), Expect = 0.015
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 33/140 (23%)
Query: 5 SHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPDALE 64
S++S+ GR + + + L P A QAA + RGPNQ S ++L
Sbjct: 516 SYVSSTGRAHSGAAPWQPLAAPSG-ASAQAA------EQLQRGPNQPVES-----DESLG 563
Query: 65 GLLASSR-----PPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEA 119
GL A+ R P P P +AG PQ D G + GSGP +
Sbjct: 564 GLSAALRSWHLTPSCPLDPAPLREAGC----------------PQGDTAGESSWGSGPGS 607
Query: 120 RGAPAWGGASGASRDAARQP 139
R G A G+S ++ +P
Sbjct: 608 RPTAVEGLALGSSASSSSEP 627
>gi|68800243 interleukin-1 receptor-associated kinase 1 isoform 1
[Homo sapiens]
Length = 712
Score = 35.8 bits (81), Expect = 0.015
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 33/140 (23%)
Query: 5 SHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPDALE 64
S++S+ GR + + + L P A QAA + RGPNQ S ++L
Sbjct: 546 SYVSSTGRAHSGAAPWQPLAAPSG-ASAQAA------EQLQRGPNQPVES-----DESLG 593
Query: 65 GLLASSR-----PPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEA 119
GL A+ R P P P +AG PQ D G + GSGP +
Sbjct: 594 GLSAALRSWHLTPSCPLDPAPLREAGC----------------PQGDTAGESSWGSGPGS 637
Query: 120 RGAPAWGGASGASRDAARQP 139
R G A G+S ++ +P
Sbjct: 638 RPTAVEGLALGSSASSSSEP 657
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 35.4 bits (80), Expect = 0.020
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 11/156 (7%)
Query: 2 SPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPD 61
S H S+ G+ + SG S R G +G + F + +W S +
Sbjct: 2307 SGSGHSSSYGQHGSGSGWSSSSGRHGSGSGQSSGF--------GHHESSSWQSSGYTQHG 2358
Query: 62 ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
+ G +S RS G + G + +S+S G G +HGSG
Sbjct: 2359 SGSGHSSSYEQHGSRS-GQSSRGERHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSP 2417
Query: 122 APAWGG-ASGASRDAARQP-ASGCGWCGGQRRPEAG 155
+P+ G SG+ + ++ P SG GW + E+G
Sbjct: 2418 SPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESG 2453
Score = 35.0 bits (79), Expect = 0.026
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 11/156 (7%)
Query: 2 SPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPD 61
S H S+ G+ + SG S R G +G + F + +W S +
Sbjct: 1367 SGSGHSSSYGQHGSGSGWSSSSGRHGSGSGQSSGF--------GHHESSSWQSSGCTQHG 1418
Query: 62 ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
+ G +S RS G + G + +S+S G G +HGSG
Sbjct: 1419 SGSGHSSSYEQHGSRS-GQSSRGERHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSP 1477
Query: 122 APAWGG-ASGASRDAARQP-ASGCGWCGGQRRPEAG 155
+P+ G SG+ + ++ P SG GW + E+G
Sbjct: 1478 SPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESG 1513
Score = 34.7 bits (78), Expect = 0.034
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 11/156 (7%)
Query: 2 SPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPD 61
S H S+ G+ + SG S R G +G + F + +W S +
Sbjct: 1837 SGSGHSSSYGQHGSGSGWSSSSGRHGSGSGQSSGF--------GHHESSSWQSSGYTQHG 1888
Query: 62 ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
+ G +S RS G + G + +S+S G G +HGSG
Sbjct: 1889 SGSGHSSSYEQHGSRS-GQSSRGEQHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSP 1947
Query: 122 APAWGG-ASGASRDAARQP-ASGCGWCGGQRRPEAG 155
+P+ G SG+ + ++ P SG GW + E+G
Sbjct: 1948 SPSRGRHGSGSGQSSSYGPYGSGSGWSSSRGPYESG 1983
Score = 29.3 bits (64), Expect = 1.4
Identities = 39/149 (26%), Positives = 56/149 (37%), Gaps = 26/149 (17%)
Query: 2 SPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPD 61
S SH S LG + SGQS + G +G +SS + Q+ + Q
Sbjct: 1512 SGSSHSSGLGHRESRSGQSSGYGQHGSSSG-----HSSTHGQHGSTSGQSSSCGQHG--- 1563
Query: 62 ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
ASS G + G G S S ++PG Q GSG +R
Sbjct: 1564 ------ASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQ--------RGSG--SRQ 1607
Query: 122 APAWG--GASGASRDAARQPASGCGWCGG 148
+P++G G+ ++ Q SG G G
Sbjct: 1608 SPSYGRHGSGSGRSSSSGQHGSGLGESSG 1636
Score = 28.1 bits (61), Expect = 3.2
Identities = 34/154 (22%), Positives = 52/154 (33%), Gaps = 5/154 (3%)
Query: 6 HLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQR----RRPD 61
H S+ G+ + SG S G V+G + F S G +Q + R+
Sbjct: 671 HSSSYGQHGSGSGWSSSNGPHGSVSGQSSGFGHKSGSGQSSGYSQHGSGSSHSSGYRKHG 730
Query: 62 ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
+ G + S S G G G G+H S+ G HGS
Sbjct: 731 SRSGQSSRSEQH-GSSSGLSSSYGQHGSGSHQSSGHGRQGSGSGHSPSRVRHGSSSGHSS 789
Query: 122 APAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155
+ G+ + + SG G G + E+G
Sbjct: 790 SHGQHGSGTSCSSSCGHYESGSGQASGFGQHESG 823
Score = 27.7 bits (60), Expect = 4.1
Identities = 38/149 (25%), Positives = 55/149 (36%), Gaps = 26/149 (17%)
Query: 2 SPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPD 61
S H S LG + SGQS + G +G +SS + Q+ + Q
Sbjct: 1042 SGSGHSSGLGHRESRSGQSSGYGQHGSSSG-----HSSTHGQHGSTSGQSSSCGQHG--- 1093
Query: 62 ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
ASS G + G G S S ++PG Q GSG +R
Sbjct: 1094 ------ASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQ--------RGSG--SRQ 1137
Query: 122 APAWG--GASGASRDAARQPASGCGWCGG 148
+P++G G+ ++ Q SG G G
Sbjct: 1138 SPSYGRHGSGSGRSSSSGQHGSGLGESSG 1166
Score = 27.7 bits (60), Expect = 4.1
Identities = 38/149 (25%), Positives = 55/149 (36%), Gaps = 26/149 (17%)
Query: 2 SPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPD 61
S H S LG + SGQS + G +G +SS + Q+ + Q
Sbjct: 2452 SGSGHSSGLGHRESRSGQSSGYGQHGSSSG-----HSSTHGQHGSTSGQSSSCGQHG--- 2503
Query: 62 ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
ASS G + G G S S ++PG Q GSG +R
Sbjct: 2504 ------ASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQ--------RGSG--SRQ 2547
Query: 122 APAWG--GASGASRDAARQPASGCGWCGG 148
+P++G G+ ++ Q SG G G
Sbjct: 2548 SPSYGRHGSGSGRSSSSGQHGSGLGESSG 2576
Score = 26.9 bits (58), Expect = 7.0
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 90 GTHTSASRKAPGEPQLDVTGGAEHGSGPEARG---APAWG-GASGASRDAARQP-ASGCG 144
G H SASR + G Q G G G G +P+ G +G R ++ P SG G
Sbjct: 401 GQHESASRHSSGRGQHSSGSGQSPGHGQRGSGSGQSPSSGQHGTGFGRSSSSGPYVSGSG 460
Query: 145 WCGG 148
+ G
Sbjct: 461 YSSG 464
Score = 26.6 bits (57), Expect = 9.2
Identities = 37/149 (24%), Positives = 54/149 (36%), Gaps = 26/149 (17%)
Query: 2 SPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPD 61
S H S LG + SGQS + G +G +SS + Q+ + Q
Sbjct: 1982 SGSGHSSGLGHRESRSGQSSGYGQHGSSSG-----HSSTHGQHGSASGQSSSCGQHG--- 2033
Query: 62 ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
ASS G + G G S S ++PG Q GSG +R
Sbjct: 2034 ------ASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQ--------RGSG--SRQ 2077
Query: 122 APAWG--GASGASRDAARQPASGCGWCGG 148
+P++G G+ ++ Q G G G
Sbjct: 2078 SPSYGRHGSGSGRSSSSGQHGPGLGESSG 2106
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 35.0 bits (79), Expect = 0.026
Identities = 40/135 (29%), Positives = 49/135 (36%), Gaps = 13/135 (9%)
Query: 4 PSHLSTLGREPAASGQS------RLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQR 57
P+ L+T +P GQ + +V P GPQ + D + A R
Sbjct: 90 PTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPR 149
Query: 58 RRPDALEGLLASSRPPIPRSPGDRGQAGLGG--VGTHTSASRKAPGEPQLDVTGGAEHGS 115
R D G + PP P PG G GLGG + G QL V G
Sbjct: 150 GR-DGEPGTPGNPGPPGP--PGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPM 206
Query: 116 GPEARGAPAWGGASG 130
GP RG P GA G
Sbjct: 207 GP--RGPPGPAGAPG 219
Score = 29.6 bits (65), Expect = 1.1
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 72 PPIPRSPGDRGQAGLGGVGTHTSAS--RKAPGEPQLDVTGGAEHGSGPEARGAPAWGGAS 129
P P +PG +G+AG G A R PG P GA G + G P G++
Sbjct: 365 PGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTD--GIPGAKGSA 422
Query: 130 GA 131
GA
Sbjct: 423 GA 424
Score = 29.3 bits (64), Expect = 1.4
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 68 ASSRPPIPRSPGDRGQAGLGG-VGTHTSASRKAP-GEPQLDVTGGAEHGSGPEARGAPAW 125
A P + PG+RG AG+ G G K P G P D G +GP G P
Sbjct: 742 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKD---GGRGLTGP--IGPPGP 796
Query: 126 GGASGASRDAARQPASGCGWCGGQRRP 152
GA+G + P G G + P
Sbjct: 797 AGANGEKGEVG--PPGPAGSAGARGAP 821
Score = 28.5 bits (62), Expect = 2.4
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 72 PPIPRSPGDRGQAGLGGVGTH-----TSASRKAPGEPQLDVTGGAEHGSGPEARGAPAWG 126
P P PGD G+AG G +R PG P L G H P GA
Sbjct: 245 PGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKG--HRGYPGLDGAKGEA 302
Query: 127 GASGASRDAARQPASG 142
GA G ++ +G
Sbjct: 303 GAPGVKGESGSPGENG 318
Score = 27.7 bits (60), Expect = 4.1
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 77 SPGDRGQAGLGG-VGTHTSASRKAPGEPQLDVTGGAEHGSG-PEARGAPAWGGASGASRD 134
+PG+RG +GL G G + R PGEP L GA +G P G G SGA +
Sbjct: 529 APGERGPSGLAGPKGANGDPGR--PGEPGLP---GARGLTGRPGDAGPQGKVGPSGAPGE 583
Query: 135 AARQPASGCGWCGGQ 149
R G GQ
Sbjct: 584 DGRPGPPGPQGARGQ 598
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 35.0 bits (79), Expect = 0.026
Identities = 32/100 (32%), Positives = 35/100 (35%), Gaps = 23/100 (23%)
Query: 60 PDALEGLLASSRPP----IPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGS 115
P L+GL + PP P PG +G AG APG P GG
Sbjct: 637 PQGLQGLPGTGGPPGENGKPGEPGPKGDAG-------------APGAP-----GGKGDAG 678
Query: 116 GPEARGAPAWGGASGASRDAARQ-PASGCGWCGGQRRPEA 154
P RG P GA G A P G G G P A
Sbjct: 679 APGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGA 718
Score = 31.2 bits (69), Expect = 0.37
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 75 PRSPGDRGQAGLGGVGTHTSASRK--APGEPQLD-VTGGAEHGSGPEARGAPAWGGASGA 131
P G+RG+AG+ GV K +PGEP + + G A P RG G G
Sbjct: 443 PGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGE 502
Query: 132 SRDAARQPASG 142
A + A G
Sbjct: 503 KGPAGERGAPG 513
Score = 28.1 bits (61), Expect = 3.2
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 77 SPGDRGQAGLGGVGTHTSASRKA--PGEPQLDVTGGAEHGSG----PEARGAPAWGGASG 130
+PG++G+ G GV S A PG + G+ G G P ARG P G++G
Sbjct: 829 APGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNG 888
Score = 27.7 bits (60), Expect = 4.1
Identities = 25/89 (28%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 69 SSRPPIPRSPGDRGQAGLGGV--------GTHTSASRKAPGEPQLDVTGGAEHGSGPEAR 120
S RP P G RGQ G+ G + R PG P G +GP+
Sbjct: 560 SGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGP 619
Query: 121 GAPAW-GGASGASRDAARQPASGCGWCGG 148
P GG G + Q G GG
Sbjct: 620 PGPTGPGGDKGDTGPPGPQGLQGLPGTGG 648
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 35.0 bits (79), Expect = 0.026
Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 19/124 (15%)
Query: 13 EPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPDALEGLLASSRP 72
EP G L+ PG + G Q S M RGP +G+
Sbjct: 508 EPGDPGPPGLIGSPG-LKGQQG----SAGSMGPRGPPGDVGLPGEHGIPGKQGIKGEKGD 562
Query: 73 P-----IPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEA-RGAPAWG 126
P P PG +G+AG G + PGEP LD GA GP+ RG P
Sbjct: 563 PGGIIGPPGLPGPKGEAGPPG--------KSLPGEPGLDGNPGAPGPRGPKGERGLPGVH 614
Query: 127 GASG 130
G+ G
Sbjct: 615 GSPG 618
>gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens]
Length = 196
Score = 34.7 bits (78), Expect = 0.034
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 14/77 (18%)
Query: 81 RGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAWG-----GASGASRDA 135
RG+ G G+G +A+R+ P +D T P GAP++ G SG S
Sbjct: 58 RGEPGSRGLGEGPAAARR-PQVQSIDTT--------PSGEGAPSFSRAQRPGRSGPSPSL 108
Query: 136 ARQPASGCGWCGGQRRP 152
A PA G G G RP
Sbjct: 109 ASDPAPGRGAAWGSLRP 125
>gi|4507161 SRY-box 11 [Homo sapiens]
Length = 441
Score = 34.7 bits (78), Expect = 0.034
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
Query: 48 PNQTWASRQRRRPDALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTS-ASRKAPGEPQLD 106
P+ + R++ + D AS P + G G AG G G TS S K G+ +
Sbjct: 114 PDYKYRPRKKPKMDPSAKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAP 173
Query: 107 VTGGAEHGSGPEARGAPAWGGASGASRDAARQPASGCGWCG 147
GA+ G+G A+ G + R SG G G
Sbjct: 174 AAAGAKAGAGKAAQSGDYGGAGDDYVLGSLRVSGSGGGGAG 214
Score = 26.9 bits (58), Expect = 7.0
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 102 EPQLDVTGGAEHGSGPEARGAPAWGGASGASRDAARQPASGCGWCGGQRRPEA 154
+P++D + PE A GG++G A+ CG + P A
Sbjct: 123 KPKMDPSAKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAPAA 175
>gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens]
Length = 758
Score = 34.3 bits (77), Expect = 0.044
Identities = 36/117 (30%), Positives = 45/117 (38%), Gaps = 5/117 (4%)
Query: 12 REPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPDALEGLLASSR 71
R P G S G A A+ + + P Q WAS RR+ L G A S
Sbjct: 69 RRPQRHGGSGTAAHAG-AARQVASGFMPHRRRRRTAPGQPWASGFRRQGRGLSGPGAGSG 127
Query: 72 PPIPRSPGDRGQAGLGGVGTHTS-ASRKAPGEPQLDVTGGAEHGSGPEARGA-PAWG 126
R G+AG G + TS A P P+ GAE S P ++ AWG
Sbjct: 128 R--GRGGALIGRAGGGAMAAKTSPAMLPLPPRPRFRFGAGAEEASWPLSQNVYGAWG 182
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 33.9 bits (76), Expect = 0.058
Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 10/114 (8%)
Query: 43 MDSRGPNQTWASRQRRRPDALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGE 102
MD++ + R GLL P PR P A L +G + RK
Sbjct: 1 MDNKRDKAKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRK---- 56
Query: 103 PQLDVTGGAEHGSGPEA--RGAPAWGGASGASRDAARQPASGCGWCGGQRRPEA 154
P + GG + PE+ R P + + A+R PASG G+R P A
Sbjct: 57 PLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASG----RGERAPPA 106
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 33.9 bits (76), Expect = 0.058
Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 10/114 (8%)
Query: 43 MDSRGPNQTWASRQRRRPDALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGE 102
MD++ + R GLL P PR P A L +G + RK
Sbjct: 1 MDNKRDKAKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRK---- 56
Query: 103 PQLDVTGGAEHGSGPEA--RGAPAWGGASGASRDAARQPASGCGWCGGQRRPEA 154
P + GG + PE+ R P + + A+R PASG G+R P A
Sbjct: 57 PLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASG----RGERAPPA 106
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 33.5 bits (75), Expect = 0.075
Identities = 23/76 (30%), Positives = 24/76 (31%), Gaps = 6/76 (7%)
Query: 78 PGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAWGGASGASRDAAR 137
P RG+ G GG P P GG G P RG P G G
Sbjct: 702 PYHRGRGGRGG------NEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHE 755
Query: 138 QPASGCGWCGGQRRPE 153
P G G G R E
Sbjct: 756 GPGGGMGNSSGHRPHE 771
Score = 29.3 bits (64), Expect = 1.4
Identities = 32/129 (24%), Positives = 38/129 (29%), Gaps = 15/129 (11%)
Query: 26 PGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP-DALEGLLASSRPPIPRSPGDRGQA 84
P GP GP + RP + G + S P PG
Sbjct: 735 PNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRP-HEGPG----G 789
Query: 85 GLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAWGGASGASRDAARQPASGCG 144
+GG G H + PG GG GSG P G +G P G
Sbjct: 790 SMGGGGGHRP--HEGPG-------GGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG 840
Query: 145 WCGGQRRPE 153
GG R E
Sbjct: 841 GSGGHRPHE 849
>gi|239749065 PREDICTED: hypothetical protein XP_002346903 [Homo
sapiens]
Length = 128
Score = 33.5 bits (75), Expect = 0.075
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 72 PPIPRSPGDRGQAGLGGVGT------HTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAW 125
PP+P PGD LGGV + R+ P +V G E G EA P
Sbjct: 5 PPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARPV- 63
Query: 126 GGASGASRDAARQPASGCG 144
G SGA R + A+ G
Sbjct: 64 GSHSGAPRVCRAEGAASPG 82
>gi|239508743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 128
Score = 33.5 bits (75), Expect = 0.075
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 72 PPIPRSPGDRGQAGLGGVGT------HTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAW 125
PP+P PGD LGGV + R+ P +V G E G EA P
Sbjct: 5 PPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARPV- 63
Query: 126 GGASGASRDAARQPASGCG 144
G SGA R + A+ G
Sbjct: 64 GSHSGAPRVCRAEGAASPG 82
>gi|13775236 scratch [Homo sapiens]
Length = 348
Score = 33.5 bits (75), Expect = 0.075
Identities = 30/93 (32%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 55 RQRRRPDALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHG 114
R RR+ A S GD G G GG G + S PG GG G
Sbjct: 123 RSRRKASNAGSAAAPSTASAAAPDGDAG--GGGGAGGRSLGS--GPGG-----RGGTRAG 173
Query: 115 SGPEARGAPAWGGASGASRDAARQPASGCGWCG 147
+G EAR P GA G CG CG
Sbjct: 174 AGTEARAGPGAAGAGG---------RHACGECG 197
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,059,095
Number of Sequences: 37866
Number of extensions: 439410
Number of successful extensions: 3000
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 386
Number of HSP's that attempted gapping in prelim test: 2373
Number of HSP's gapped (non-prelim): 955
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.