Guide to the Human Genome
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Name: LOC100127913 Sequence: fasta or formatted (155aa) NCBI GI: 169163382
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {155aa} PREDICTED: hypothetical protein
alt mRNA {155aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         21           2
 C cysteine            1.3          2           1
 D aspartate           3.2          5           1
 E glutamate           3.9          6           1
 F phenylalanine       1.3          2           1
 G glycine            16.8         26           2
 H histidine           1.9          3           1
 I isoleucine          0.6          1           1
 K lysine              1.3          2           1
 L leucine             5.8          9           2
 M methionine          1.3          2           1
 N asparagine          1.3          2           1
 P proline            11.0         17           2
 Q glutamine           5.8          9           1
 R arginine           11.0         17           3
 S serine             11.6         18           2
 T threonine           3.2          5           1
 V valine              2.6          4           1
 W tryptophan          1.9          3           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100127913          1.000   PREDICTED: hypothetical protein 
LOC100127913          1.000   PREDICTED: hypothetical protein 
LOC730456             0.057   PREDICTED: hypothetical protein 
COL4A5                0.047   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.047   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.047   type IV collagen alpha 5 isoform 3 precursor 
FZD8                  0.047   frizzled 8 
HOXD11                0.040   homeobox D11 
COL1A1                0.040   alpha 1 type I collagen preproprotein 
COL4A3                0.037   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.037   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.037   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.037   alpha 3 type IV collagen isoform 1 precursor 
IRAK1                 0.037   interleukin-1 receptor-associated kinase 1 isoform 3...
IRAK1                 0.037   interleukin-1 receptor-associated kinase 1 isoform 2...
IRAK1                 0.037   interleukin-1 receptor-associated kinase 1 isoform 1...
HRNR                  0.034   hornerin 
COL2A1                0.034   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL3A1                0.034   collagen type III alpha 1 preproprotein 
COL19A1               0.034   alpha 1 type XIX collagen precursor 
LOC645722             0.034   PREDICTED: similar to hCG2037003 
SOX11                 0.034   SRY-box 11 
LOC100294439          0.030   PREDICTED: similar to Os05g0242100 
FLJ22184              0.030   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.030   PREDICTED: hypothetical protein FLJ22184 
PPP1R10               0.027   protein phosphatase 1, regulatory subunit 10 
LOC100290358          0.027   PREDICTED: hypothetical protein XP_002346903 
LOC100294079          0.027   PREDICTED: hypothetical protein 
SCRT1                 0.027   scratch 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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