Guide to the Human Genome
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Name: LOC730456 Sequence: fasta or formatted (174aa) NCBI GI: 169166217
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {175aa} PREDICTED: hypothetical protein
alt prot {197aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            20.1         35           4
 C cysteine            2.3          4           1
 D aspartate           1.7          3           1
 E glutamate           2.9          5           2
 F phenylalanine       2.3          4           1
 G glycine            13.2         23           7
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              1.7          3           1
 L leucine             6.3         11           2
 M methionine          0.6          1           1
 N asparagine          0.0          0           0
 P proline            13.2         23           4
 Q glutamine           3.4          6           1
 R arginine            9.8         17           2
 S serine             11.5         20           2
 T threonine           1.7          3           1
 V valine              4.0          7           1
 W tryptophan          4.6          8           2
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730456             0.619   PREDICTED: hypothetical protein 
LOC730456             0.619   PREDICTED: hypothetical protein 
VASP                  0.056   vasodilator-stimulated phosphoprotein 
LOC100289763          0.053   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.053   PREDICTED: hypothetical protein XP_002343623 
LOC100292172          0.053   PREDICTED: hypothetical protein 
LOC100127913          0.050   PREDICTED: hypothetical protein 
FLJ31945              0.050   PREDICTED: hypothetical protein 
LOC100127913          0.050   PREDICTED: hypothetical protein 
FLJ31945              0.050   PREDICTED: hypothetical protein 
LOC100127913          0.050   PREDICTED: hypothetical protein 
CASKIN2               0.047   cask-interacting protein 2 isoform b 
CASKIN2               0.047   cask-interacting protein 2 isoform a 
FLJ22184              0.044   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.044   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.044   PREDICTED: hypothetical protein LOC80164 
ATXN2                 0.044   ataxin 2 
LOC338758             0.044   PREDICTED: hypothetical protein 
LOC338758             0.044   PREDICTED: hypothetical protein 
LOC100291533          0.044   PREDICTED: hypothetical protein XP_002347080 
LOC338758             0.044   PREDICTED: hypothetical protein 
LOC100288002          0.044   PREDICTED: hypothetical protein XP_002342946 
FOXE1                 0.044   forkhead box E1 
FAM48B1               0.044   hypothetical protein LOC100130302 
MYO15A                0.041   myosin XV 
ZNF703                0.041   zinc finger protein 703 
FLJ31945              0.041   PREDICTED: hypothetical protein 
MARK4                 0.041   MAP/microtubule affinity-regulating kinase 4 
EOMES                 0.041   eomesodermin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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