Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 169163382

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169163382 PREDICTED: hypothetical protein [Homo sapiens]
         (155 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169163618 PREDICTED: hypothetical protein [Homo sapiens]           323   4e-89
gi|169164180 PREDICTED: hypothetical protein [Homo sapiens]           323   4e-89
gi|169163382 PREDICTED: hypothetical protein [Homo sapiens]           323   4e-89
gi|169166217 PREDICTED: hypothetical protein [Homo sapiens]            42   3e-04
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    39   0.001
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa...    39   0.001
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s...    39   0.001
gi|13994190 frizzled 8 [Homo sapiens]                                  39   0.002
gi|23510368 homeobox D11 [Homo sapiens]                                37   0.005
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      37   0.007
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s...    36   0.012
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s...    36   0.012
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s...    36   0.012
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s...    36   0.012
gi|68800350 interleukin-1 receptor-associated kinase 1 isoform 3...    36   0.015
gi|68800343 interleukin-1 receptor-associated kinase 1 isoform 2...    36   0.015
gi|68800243 interleukin-1 receptor-associated kinase 1 isoform 1...    36   0.015
gi|57864582 hornerin [Homo sapiens]                                    35   0.020
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    35   0.026
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      35   0.026
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]         35   0.026
gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens]           35   0.034
gi|4507161 SRY-box 11 [Homo sapiens]                                   35   0.034
gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens]         34   0.044
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    34   0.058
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    34   0.058
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s...    33   0.075
gi|239749065 PREDICTED: hypothetical protein XP_002346903 [Homo ...    33   0.075
gi|239508743 PREDICTED: hypothetical protein [Homo sapiens]            33   0.075
gi|13775236 scratch [Homo sapiens]                                     33   0.075

>gi|169163618 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score =  323 bits (828), Expect = 4e-89
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP 60
           MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP
Sbjct: 1   MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP 60

Query: 61  DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR 120
           DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR
Sbjct: 61  DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR 120

Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155
           GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG
Sbjct: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155


>gi|169164180 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score =  323 bits (828), Expect = 4e-89
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP 60
           MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP
Sbjct: 1   MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP 60

Query: 61  DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR 120
           DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR
Sbjct: 61  DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR 120

Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155
           GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG
Sbjct: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155


>gi|169163382 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score =  323 bits (828), Expect = 4e-89
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP 60
           MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP
Sbjct: 1   MSPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP 60

Query: 61  DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR 120
           DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR
Sbjct: 61  DALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEAR 120

Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155
           GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG
Sbjct: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155


>gi|169166217 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 174

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 46/153 (30%), Positives = 64/153 (41%), Gaps = 17/153 (11%)

Query: 4   PSHLSTLGREPAASGQSRLLVRPGQVAGPQA--AFYSSFNKMDSRGPNQTWASRQRRRPD 61
           PS  ++     AA   +R   RP     P+A  A +  F+      P++   S  R  P 
Sbjct: 8   PSAAASAAGAAAAVAAARSWGRPAPWLAPRASEALWYCFSTPAGVRPSEEQDSASRPSPF 67

Query: 62  AL--EGLLASSRPP-----IPRSPGDRGQAG--LGGVGTHTSASRKAPGEPQLDVTGGAE 112
            L   G L++ RP      +PR P  RG  G  +   G   +A+   PG  Q     G+ 
Sbjct: 68  VLLQSGRLSTKRPERQASLLPR-PAPRGSTGAQVWWAGPGAAAAPPPPGVRQCSALAGSS 126

Query: 113 HGSGPEARGAPAWGGASGASRDAARQPASGCGW 145
               P   G    GG SG++R A R+P SG GW
Sbjct: 127 VPWFPGGGG----GGGSGSARRALRKP-SGGGW 154


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
           sapiens]
          Length = 1691

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 60  PDALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEA 119
           P  L G+     P  P  PG  GQ GL G+       +  PG P LDV G       P  
Sbjct: 812 PPGLPGIGVQGPPGPPGIPGPIGQPGLHGI----PGEKGDPGPPGLDVPGPPGERGSPGI 867

Query: 120 RGAPAWGGASGASRDAARQPASG 142
            GAP   G  G+     +  ASG
Sbjct: 868 PGAPGPIGPPGSPGLPGKAGASG 890



 Score = 30.4 bits (67), Expect = 0.64
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 71  RPPIPRSPGDRGQAGLGGVGTHTSASRKA----PGEPQLDVTGGAEHGSGPEARGAPAWG 126
           +P +P  PG +G+ G+ G+G       K     PG P    T G     GP   G P + 
Sbjct: 688 QPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPP--GPPGFP 745

Query: 127 GASG 130
           G  G
Sbjct: 746 GPKG 749



 Score = 30.4 bits (67), Expect = 0.64
 Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 12/85 (14%)

Query: 72   PPIPRSPGDRGQAGLGGV-GTHTSASRKA----PGEPQLDVTGGAEHGSG-------PEA 119
            P +P +PG +GQ GL G  GT      K     PG P L    G   G G       P  
Sbjct: 1106 PGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGE 1165

Query: 120  RGAPAWGGASGASRDAARQPASGCG 144
            +G P   G  G +         G G
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFG 1190



 Score = 27.7 bits (60), Expect = 4.1
 Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 65  GLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAP 123
           G      P  P  PG+RGQ G  G           PG P LD   GA    GP     P
Sbjct: 389 GAAVMGPPGPPGFPGERGQKGDEG-----PPGISIPGPPGLDGQPGAPGLPGPPGPAGP 442


>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
           sapiens]
          Length = 1685

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 60  PDALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEA 119
           P  L G+     P  P  PG  GQ GL G+       +  PG P LDV G       P  
Sbjct: 812 PPGLPGIGVQGPPGPPGIPGPIGQPGLHGI----PGEKGDPGPPGLDVPGPPGERGSPGI 867

Query: 120 RGAPAWGGASGASRDAARQPASG 142
            GAP   G  G+     +  ASG
Sbjct: 868 PGAPGPIGPPGSPGLPGKAGASG 890



 Score = 30.4 bits (67), Expect = 0.64
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 71  RPPIPRSPGDRGQAGLGGVGTHTSASRKA----PGEPQLDVTGGAEHGSGPEARGAPAWG 126
           +P +P  PG +G+ G+ G+G       K     PG P    T G     GP   G P + 
Sbjct: 688 QPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPP--GPPGFP 745

Query: 127 GASG 130
           G  G
Sbjct: 746 GPKG 749



 Score = 30.4 bits (67), Expect = 0.64
 Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 12/85 (14%)

Query: 72   PPIPRSPGDRGQAGLGGV-GTHTSASRKA----PGEPQLDVTGGAEHGSG-------PEA 119
            P +P +PG +GQ GL G  GT      K     PG P L    G   G G       P  
Sbjct: 1106 PGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGE 1165

Query: 120  RGAPAWGGASGASRDAARQPASGCG 144
            +G P   G  G +         G G
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFG 1190



 Score = 27.7 bits (60), Expect = 4.1
 Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 65  GLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAP 123
           G      P  P  PG+RGQ G  G           PG P LD   GA    GP     P
Sbjct: 389 GAAVMGPPGPPGFPGERGQKGDEG-----PPGISIPGPPGLDGQPGAPGLPGPPGPAGP 442


>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
           sapiens]
          Length = 1688

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 60  PDALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEA 119
           P  L G+     P  P  PG  GQ GL G+       +  PG P LDV G       P  
Sbjct: 812 PPGLPGIGVQGPPGPPGIPGPIGQPGLHGI----PGEKGDPGPPGLDVPGPPGERGSPGI 867

Query: 120 RGAPAWGGASGASRDAARQPASG 142
            GAP   G  G+     +  ASG
Sbjct: 868 PGAPGPIGPPGSPGLPGKAGASG 890



 Score = 30.4 bits (67), Expect = 0.64
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 71  RPPIPRSPGDRGQAGLGGVGTHTSASRKA----PGEPQLDVTGGAEHGSGPEARGAPAWG 126
           +P +P  PG +G+ G+ G+G       K     PG P    T G     GP   G P + 
Sbjct: 688 QPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPP--GPPGFP 745

Query: 127 GASG 130
           G  G
Sbjct: 746 GPKG 749



 Score = 30.4 bits (67), Expect = 0.64
 Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 12/85 (14%)

Query: 72   PPIPRSPGDRGQAGLGGV-GTHTSASRKA----PGEPQLDVTGGAEHGSG-------PEA 119
            P +P +PG +GQ GL G  GT      K     PG P L    G   G G       P  
Sbjct: 1106 PGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGE 1165

Query: 120  RGAPAWGGASGASRDAARQPASGCG 144
            +G P   G  G +         G G
Sbjct: 1166 KGKPGQDGIPGPAGQKGEPGQPGFG 1190



 Score = 27.7 bits (60), Expect = 4.1
 Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 65  GLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAP 123
           G      P  P  PG+RGQ G  G           PG P LD   GA    GP     P
Sbjct: 389 GAAVMGPPGPPGFPGERGQKGDEG-----PPGISIPGPPGLDGQPGAPGLPGPPGPAGP 442


>gi|13994190 frizzled 8 [Homo sapiens]
          Length = 694

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 24/59 (40%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 97  RKAPGEPQLDVTGGAEHGSGPEARGAPAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155
           R  P  P      G+ HG  P AR     GG  G   DAA  PA G G  GG+ RP  G
Sbjct: 166 RLPPPPPGEQPPSGSGHGRPPGARPPHRGGGRGGGGGDAAAPPARG-GGGGGKARPPGG 223



 Score = 30.0 bits (66), Expect = 0.83
 Identities = 23/79 (29%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 68  ASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAWGG 127
           A+  PP    P   G+    G G       + P        GG   G G +A   PA GG
Sbjct: 159 AAPSPPRRLPPPPPGEQPPSGSGHGRPPGARPPHR------GGGRGGGGGDAAAPPARGG 212

Query: 128 ASGASRDAARQPASGCGWC 146
             G     AR P  G   C
Sbjct: 213 GGGGK---ARPPGGGAAPC 228



 Score = 26.9 bits (58), Expect = 7.0
 Identities = 16/33 (48%), Positives = 17/33 (51%)

Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPE 153
           GAP  GGA GA   AA   A+G G  G   R E
Sbjct: 343 GAPGAGGAGGAGGAAAGAGAAGAGAGGPGGRGE 375


>gi|23510368 homeobox D11 [Homo sapiens]
          Length = 338

 Score = 37.4 bits (85), Expect = 0.005
 Identities = 40/128 (31%), Positives = 48/128 (37%), Gaps = 29/128 (22%)

Query: 26  PGQVAGPQAA---FYSS----------FNKMDSRGPNQTWASRQRRRPDALEGLLASSRP 72
           PG   GP  A   FYS+          F++     P   +A  Q   P A         P
Sbjct: 151 PGPPHGPAGAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPPPPPA---------P 201

Query: 73  PIPRSPGDRGQAGLGGVGTHTSASRKA-PG-EPQLDVTGGAEHGSGPEARGAPAWGGASG 130
           P P    D+G    G  G   S   KA PG EP+     GA  GSG +  G P   GA  
Sbjct: 202 PQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPK-----GAAEGSGGDGEGPPGEAGAEK 256

Query: 131 ASRDAARQ 138
           +S   A Q
Sbjct: 257 SSSAVAPQ 264


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 37.0 bits (84), Expect = 0.007
 Identities = 34/102 (33%), Positives = 40/102 (39%), Gaps = 8/102 (7%)

Query: 61  DALEGLLASSRPPIPR-SPGDRGQAGLGGVGTHTSA-----SRKAPGEPQLDVTGGAEHG 114
           D + GL     PP P  +PGD+G++G  G    T A      R  PG P      G    
Sbjct: 760 DGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGA 819

Query: 115 SG-PEARGAPAWGGASG-ASRDAARQPASGCGWCGGQRRPEA 154
            G P A+G P   GA G A       PA   G  G    P A
Sbjct: 820 DGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGA 861



 Score = 33.9 bits (76), Expect = 0.058
 Identities = 31/84 (36%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 72  PPIPRSPGDRGQAGL-GGVGTHTSASRK-APGEPQLDVTGGAEHGSGPEA-RGAPAWGGA 128
           P +   PG+RG AGL G  G    A  K A G P  D   G     GP    GAP   G 
Sbjct: 724 PGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGE 783

Query: 129 SGASRDAARQPASGCGWCGGQRRP 152
           SG S  A    A G     G+  P
Sbjct: 784 SGPSGPAGPTGARGAPGDRGEPGP 807



 Score = 31.2 bits (69), Expect = 0.37
 Identities = 34/101 (33%), Positives = 38/101 (37%), Gaps = 14/101 (13%)

Query: 69  SSRPPIPRSPGDRGQAGLGG-VGTH-------TSASRKAPGEP-QLDVTGGAEHGSGPEA 119
           S  P  P S GD G  G  G VG             R A GEP    + G      GP +
Sbjct: 433 SGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS 492

Query: 120 RGAPAWGGASGASRDAARQ----PASGCGWCGGQRRP-EAG 155
           RG P   G +G    A  +    PA   G  G   RP EAG
Sbjct: 493 RGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAG 533



 Score = 30.4 bits (67), Expect = 0.64
 Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 71  RPPIPRSPGDRGQAGL-------GGVGTHTSA-SRKAPGEPQLDVTGGAEHGSGPEARGA 122
           RP  P  PG RGQAG+       G  G    A  R  PG P      G +  +G  A+G 
Sbjct: 564 RPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAG--AQGP 621

Query: 123 PAWGGASGASRDAARQPASGCGWCG 147
           P  G A  A     + PA   G+ G
Sbjct: 622 P--GPAGPAGERGEQGPAGSPGFQG 644



 Score = 28.5 bits (62), Expect = 2.4
 Identities = 36/140 (25%), Positives = 42/140 (30%), Gaps = 6/140 (4%)

Query: 4   PSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPDAL 63
           PS    L   P A G       PG+   P A+       M  RGP               
Sbjct: 183 PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGAS-----GPMGPRGPPGPPGKNGDDGEAGK 237

Query: 64  EGLLASSRPPIPRSP-GDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGA 122
            G      PP P+   G  G AGL G+  H   S     +      G       P   GA
Sbjct: 238 PGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGA 297

Query: 123 PAWGGASGASRDAARQPASG 142
           P   G  G   +  R  A G
Sbjct: 298 PGQMGPRGLPGERGRPGAPG 317



 Score = 27.7 bits (60), Expect = 4.1
 Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 72  PPIPRSPGDRGQAGLGGV--GTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAWGGAS 129
           P  P + G +G+AG  G          R  PG P     G A     P A G P   GA+
Sbjct: 343 PGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPP--GPAGAAGPAGNPGADGQPGAKGAN 400

Query: 130 GASRDAARQPASGCGWCGGQRRP 152
           GA   A      G     G + P
Sbjct: 401 GAPGIAGAPGFPGARGPSGPQGP 423



 Score = 27.3 bits (59), Expect = 5.4
 Identities = 20/66 (30%), Positives = 23/66 (34%)

Query: 77  SPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAWGGASGASRDAA 136
           +PG  G  GL G      A   A        TG A         G P + GA GA  +A 
Sbjct: 297 APGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAG 356

Query: 137 RQPASG 142
            Q   G
Sbjct: 357 PQGPRG 362


>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
           sapiens]
          Length = 1424

 Score = 36.2 bits (82), Expect = 0.012
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 46  RGPNQTWASRQRRRPDALEGLLASSRPPIPRSP-GDRGQAGLGGV----GTHTSASRKAP 100
           RGP + + + Q +  +   G      PP PR   G +G +G  GV    G+     R AP
Sbjct: 341 RGPTEYYDTYQEKGDEGTPG------PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAP 394

Query: 101 GEPQLDVTGGAEHGSGPEARGAPAWGGASGA 131
           G P L  + G     G +A G P   G +G+
Sbjct: 395 GWPGLKGSKGERGRPGKDAMGTPGSPGCAGS 425



 Score = 30.8 bits (68), Expect = 0.49
 Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 60  PDALEGLLASSRPPIPRSPGDRGQAGLGGV----GTHTSASRK-APGEPQLDVTGGAEHG 114
           P    GLL +  P IP  PG  G  GL GV    G   +A  K +PG P    TG     
Sbjct: 468 PKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSP--GNTGLPGFP 525

Query: 115 SGPEARGAPAWGGASG 130
             P A+G P   G  G
Sbjct: 526 GFPGAQGDPGLKGEKG 541



 Score = 30.0 bits (66), Expect = 0.83
 Identities = 23/66 (34%), Positives = 23/66 (34%), Gaps = 12/66 (18%)

Query: 62  ALEGLLASSRPP----IPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGP 117
           AL G      PP     P SPG  G AG  G G          GEP L  T G     GP
Sbjct: 587 ALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQ--------GEPGLQGTQGVPGAPGP 638

Query: 118 EARGAP 123
                P
Sbjct: 639 PGEAGP 644



 Score = 26.9 bits (58), Expect = 7.0
 Identities = 43/170 (25%), Positives = 53/170 (31%), Gaps = 44/170 (25%)

Query: 3    PPSHLSTLGRE--PAASGQSRLLVRPGQ-----------------VAGPQA--AFYSSFN 41
            PP HL   G E  P + G   L  +PG                  + GP     F  S  
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPG 1149

Query: 42   KMDSRGPNQTWASRQRRRPDALEGLLASSRPPIPR-------SPGDRGQAGLGGVGTHTS 94
             M  RG                 GLL +  PP PR       + GDRG  G  G+     
Sbjct: 1150 PMGIRGDQGRDGIPGPAGEKGETGLLRA--PPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207

Query: 95   ASRKA--------------PGEPQLDVTGGAEHGSGPEARGAPAWGGASG 130
            A   A              PG P   + G   +   P +RG+P   G  G
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPG 1257



 Score = 26.6 bits (57), Expect = 9.2
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 64  EGLLASSRPPIPRSPGDRGQAGLGGVG--THTSASRKAPG-EPQLDVTGGAEHGSGPEAR 120
           E L    +  +P  PG RGQ G  G+     T   +  PG + +L ++G       P   
Sbjct: 542 ETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDP 601

Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEA 154
           G+P   G +G +      P    G  G Q  P A
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA 635


>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
           sapiens]
          Length = 1494

 Score = 36.2 bits (82), Expect = 0.012
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 46  RGPNQTWASRQRRRPDALEGLLASSRPPIPRSP-GDRGQAGLGGV----GTHTSASRKAP 100
           RGP + + + Q +  +   G      PP PR   G +G +G  GV    G+     R AP
Sbjct: 341 RGPTEYYDTYQEKGDEGTPG------PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAP 394

Query: 101 GEPQLDVTGGAEHGSGPEARGAPAWGGASGA 131
           G P L  + G     G +A G P   G +G+
Sbjct: 395 GWPGLKGSKGERGRPGKDAMGTPGSPGCAGS 425



 Score = 30.8 bits (68), Expect = 0.49
 Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 60  PDALEGLLASSRPPIPRSPGDRGQAGLGGV----GTHTSASRK-APGEPQLDVTGGAEHG 114
           P    GLL +  P IP  PG  G  GL GV    G   +A  K +PG P    TG     
Sbjct: 468 PKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSP--GNTGLPGFP 525

Query: 115 SGPEARGAPAWGGASG 130
             P A+G P   G  G
Sbjct: 526 GFPGAQGDPGLKGEKG 541



 Score = 30.0 bits (66), Expect = 0.83
 Identities = 23/66 (34%), Positives = 23/66 (34%), Gaps = 12/66 (18%)

Query: 62  ALEGLLASSRPP----IPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGP 117
           AL G      PP     P SPG  G AG  G G          GEP L  T G     GP
Sbjct: 587 ALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQ--------GEPGLQGTQGVPGAPGP 638

Query: 118 EARGAP 123
                P
Sbjct: 639 PGEAGP 644



 Score = 26.9 bits (58), Expect = 7.0
 Identities = 43/170 (25%), Positives = 53/170 (31%), Gaps = 44/170 (25%)

Query: 3    PPSHLSTLGRE--PAASGQSRLLVRPGQ-----------------VAGPQA--AFYSSFN 41
            PP HL   G E  P + G   L  +PG                  + GP     F  S  
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPG 1149

Query: 42   KMDSRGPNQTWASRQRRRPDALEGLLASSRPPIPR-------SPGDRGQAGLGGVGTHTS 94
             M  RG                 GLL +  PP PR       + GDRG  G  G+     
Sbjct: 1150 PMGIRGDQGRDGIPGPAGEKGETGLLRA--PPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207

Query: 95   ASRKA--------------PGEPQLDVTGGAEHGSGPEARGAPAWGGASG 130
            A   A              PG P   + G   +   P +RG+P   G  G
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPG 1257



 Score = 26.6 bits (57), Expect = 9.2
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 64  EGLLASSRPPIPRSPGDRGQAGLGGVG--THTSASRKAPG-EPQLDVTGGAEHGSGPEAR 120
           E L    +  +P  PG RGQ G  G+     T   +  PG + +L ++G       P   
Sbjct: 542 ETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDP 601

Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEA 154
           G+P   G +G +      P    G  G Q  P A
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA 635


>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1637

 Score = 36.2 bits (82), Expect = 0.012
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 46  RGPNQTWASRQRRRPDALEGLLASSRPPIPRSP-GDRGQAGLGGV----GTHTSASRKAP 100
           RGP + + + Q +  +   G      PP PR   G +G +G  GV    G+     R AP
Sbjct: 341 RGPTEYYDTYQEKGDEGTPG------PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAP 394

Query: 101 GEPQLDVTGGAEHGSGPEARGAPAWGGASGA 131
           G P L  + G     G +A G P   G +G+
Sbjct: 395 GWPGLKGSKGERGRPGKDAMGTPGSPGCAGS 425



 Score = 30.8 bits (68), Expect = 0.49
 Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 60  PDALEGLLASSRPPIPRSPGDRGQAGLGGV----GTHTSASRK-APGEPQLDVTGGAEHG 114
           P    GLL +  P IP  PG  G  GL GV    G   +A  K +PG P    TG     
Sbjct: 468 PKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSP--GNTGLPGFP 525

Query: 115 SGPEARGAPAWGGASG 130
             P A+G P   G  G
Sbjct: 526 GFPGAQGDPGLKGEKG 541



 Score = 30.0 bits (66), Expect = 0.83
 Identities = 23/66 (34%), Positives = 23/66 (34%), Gaps = 12/66 (18%)

Query: 62  ALEGLLASSRPP----IPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGP 117
           AL G      PP     P SPG  G AG  G G          GEP L  T G     GP
Sbjct: 587 ALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQ--------GEPGLQGTQGVPGAPGP 638

Query: 118 EARGAP 123
                P
Sbjct: 639 PGEAGP 644



 Score = 26.9 bits (58), Expect = 7.0
 Identities = 43/170 (25%), Positives = 53/170 (31%), Gaps = 44/170 (25%)

Query: 3    PPSHLSTLGRE--PAASGQSRLLVRPGQ-----------------VAGPQA--AFYSSFN 41
            PP HL   G E  P + G   L  +PG                  + GP     F  S  
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPG 1149

Query: 42   KMDSRGPNQTWASRQRRRPDALEGLLASSRPPIPR-------SPGDRGQAGLGGVGTHTS 94
             M  RG                 GLL +  PP PR       + GDRG  G  G+     
Sbjct: 1150 PMGIRGDQGRDGIPGPAGEKGETGLLRA--PPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207

Query: 95   ASRKA--------------PGEPQLDVTGGAEHGSGPEARGAPAWGGASG 130
            A   A              PG P   + G   +   P +RG+P   G  G
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPG 1257



 Score = 26.6 bits (57), Expect = 9.2
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 64  EGLLASSRPPIPRSPGDRGQAGLGGVG--THTSASRKAPG-EPQLDVTGGAEHGSGPEAR 120
           E L    +  +P  PG RGQ G  G+     T   +  PG + +L ++G       P   
Sbjct: 542 ETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDP 601

Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEA 154
           G+P   G +G +      P    G  G Q  P A
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA 635


>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1670

 Score = 36.2 bits (82), Expect = 0.012
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 46  RGPNQTWASRQRRRPDALEGLLASSRPPIPRSP-GDRGQAGLGGV----GTHTSASRKAP 100
           RGP + + + Q +  +   G      PP PR   G +G +G  GV    G+     R AP
Sbjct: 341 RGPTEYYDTYQEKGDEGTPG------PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAP 394

Query: 101 GEPQLDVTGGAEHGSGPEARGAPAWGGASGA 131
           G P L  + G     G +A G P   G +G+
Sbjct: 395 GWPGLKGSKGERGRPGKDAMGTPGSPGCAGS 425



 Score = 30.8 bits (68), Expect = 0.49
 Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 60  PDALEGLLASSRPPIPRSPGDRGQAGLGGV----GTHTSASRK-APGEPQLDVTGGAEHG 114
           P    GLL +  P IP  PG  G  GL GV    G   +A  K +PG P    TG     
Sbjct: 468 PKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSP--GNTGLPGFP 525

Query: 115 SGPEARGAPAWGGASG 130
             P A+G P   G  G
Sbjct: 526 GFPGAQGDPGLKGEKG 541



 Score = 30.0 bits (66), Expect = 0.83
 Identities = 23/66 (34%), Positives = 23/66 (34%), Gaps = 12/66 (18%)

Query: 62  ALEGLLASSRPP----IPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGP 117
           AL G      PP     P SPG  G AG  G G          GEP L  T G     GP
Sbjct: 587 ALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQ--------GEPGLQGTQGVPGAPGP 638

Query: 118 EARGAP 123
                P
Sbjct: 639 PGEAGP 644



 Score = 26.9 bits (58), Expect = 7.0
 Identities = 43/170 (25%), Positives = 53/170 (31%), Gaps = 44/170 (25%)

Query: 3    PPSHLSTLGRE--PAASGQSRLLVRPGQ-----------------VAGPQA--AFYSSFN 41
            PP HL   G E  P + G   L  +PG                  + GP     F  S  
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPG 1149

Query: 42   KMDSRGPNQTWASRQRRRPDALEGLLASSRPPIPR-------SPGDRGQAGLGGVGTHTS 94
             M  RG                 GLL +  PP PR       + GDRG  G  G+     
Sbjct: 1150 PMGIRGDQGRDGIPGPAGEKGETGLLRA--PPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207

Query: 95   ASRKA--------------PGEPQLDVTGGAEHGSGPEARGAPAWGGASG 130
            A   A              PG P   + G   +   P +RG+P   G  G
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPG 1257



 Score = 26.6 bits (57), Expect = 9.2
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 64  EGLLASSRPPIPRSPGDRGQAGLGGVG--THTSASRKAPG-EPQLDVTGGAEHGSGPEAR 120
           E L    +  +P  PG RGQ G  G+     T   +  PG + +L ++G       P   
Sbjct: 542 ETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDP 601

Query: 121 GAPAWGGASGASRDAARQPASGCGWCGGQRRPEA 154
           G+P   G +G +      P    G  G Q  P A
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA 635


>gi|68800350 interleukin-1 receptor-associated kinase 1 isoform 3
           [Homo sapiens]
          Length = 633

 Score = 35.8 bits (81), Expect = 0.015
 Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 33/140 (23%)

Query: 5   SHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPDALE 64
           S++S+ GR  + +   + L  P   A  QAA      +   RGPNQ   S      ++L 
Sbjct: 467 SYVSSTGRAHSGAAPWQPLAAPSG-ASAQAA------EQLQRGPNQPVES-----DESLG 514

Query: 65  GLLASSR-----PPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEA 119
           GL A+ R     P  P  P    +AG                 PQ D  G +  GSGP +
Sbjct: 515 GLSAALRSWHLTPSCPLDPAPLREAGC----------------PQGDTAGESSWGSGPGS 558

Query: 120 RGAPAWGGASGASRDAARQP 139
           R     G A G+S  ++ +P
Sbjct: 559 RPTAVEGLALGSSASSSSEP 578


>gi|68800343 interleukin-1 receptor-associated kinase 1 isoform 2
           [Homo sapiens]
          Length = 682

 Score = 35.8 bits (81), Expect = 0.015
 Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 33/140 (23%)

Query: 5   SHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPDALE 64
           S++S+ GR  + +   + L  P   A  QAA      +   RGPNQ   S      ++L 
Sbjct: 516 SYVSSTGRAHSGAAPWQPLAAPSG-ASAQAA------EQLQRGPNQPVES-----DESLG 563

Query: 65  GLLASSR-----PPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEA 119
           GL A+ R     P  P  P    +AG                 PQ D  G +  GSGP +
Sbjct: 564 GLSAALRSWHLTPSCPLDPAPLREAGC----------------PQGDTAGESSWGSGPGS 607

Query: 120 RGAPAWGGASGASRDAARQP 139
           R     G A G+S  ++ +P
Sbjct: 608 RPTAVEGLALGSSASSSSEP 627


>gi|68800243 interleukin-1 receptor-associated kinase 1 isoform 1
           [Homo sapiens]
          Length = 712

 Score = 35.8 bits (81), Expect = 0.015
 Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 33/140 (23%)

Query: 5   SHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPDALE 64
           S++S+ GR  + +   + L  P   A  QAA      +   RGPNQ   S      ++L 
Sbjct: 546 SYVSSTGRAHSGAAPWQPLAAPSG-ASAQAA------EQLQRGPNQPVES-----DESLG 593

Query: 65  GLLASSR-----PPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEA 119
           GL A+ R     P  P  P    +AG                 PQ D  G +  GSGP +
Sbjct: 594 GLSAALRSWHLTPSCPLDPAPLREAGC----------------PQGDTAGESSWGSGPGS 637

Query: 120 RGAPAWGGASGASRDAARQP 139
           R     G A G+S  ++ +P
Sbjct: 638 RPTAVEGLALGSSASSSSEP 657


>gi|57864582 hornerin [Homo sapiens]
          Length = 2850

 Score = 35.4 bits (80), Expect = 0.020
 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 11/156 (7%)

Query: 2    SPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPD 61
            S   H S+ G+  + SG S    R G  +G  + F            + +W S    +  
Sbjct: 2307 SGSGHSSSYGQHGSGSGWSSSSGRHGSGSGQSSGF--------GHHESSSWQSSGYTQHG 2358

Query: 62   ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
            +  G  +S      RS G   +    G  + +S+S    G       G  +HGSG     
Sbjct: 2359 SGSGHSSSYEQHGSRS-GQSSRGERHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSP 2417

Query: 122  APAWGG-ASGASRDAARQP-ASGCGWCGGQRRPEAG 155
            +P+ G   SG+ + ++  P  SG GW   +   E+G
Sbjct: 2418 SPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESG 2453



 Score = 35.0 bits (79), Expect = 0.026
 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 11/156 (7%)

Query: 2    SPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPD 61
            S   H S+ G+  + SG S    R G  +G  + F            + +W S    +  
Sbjct: 1367 SGSGHSSSYGQHGSGSGWSSSSGRHGSGSGQSSGF--------GHHESSSWQSSGCTQHG 1418

Query: 62   ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
            +  G  +S      RS G   +    G  + +S+S    G       G  +HGSG     
Sbjct: 1419 SGSGHSSSYEQHGSRS-GQSSRGERHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSP 1477

Query: 122  APAWGG-ASGASRDAARQP-ASGCGWCGGQRRPEAG 155
            +P+ G   SG+ + ++  P  SG GW   +   E+G
Sbjct: 1478 SPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESG 1513



 Score = 34.7 bits (78), Expect = 0.034
 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 11/156 (7%)

Query: 2    SPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPD 61
            S   H S+ G+  + SG S    R G  +G  + F            + +W S    +  
Sbjct: 1837 SGSGHSSSYGQHGSGSGWSSSSGRHGSGSGQSSGF--------GHHESSSWQSSGYTQHG 1888

Query: 62   ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
            +  G  +S      RS G   +    G  + +S+S    G       G  +HGSG     
Sbjct: 1889 SGSGHSSSYEQHGSRS-GQSSRGEQHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSP 1947

Query: 122  APAWGG-ASGASRDAARQP-ASGCGWCGGQRRPEAG 155
            +P+ G   SG+ + ++  P  SG GW   +   E+G
Sbjct: 1948 SPSRGRHGSGSGQSSSYGPYGSGSGWSSSRGPYESG 1983



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 39/149 (26%), Positives = 56/149 (37%), Gaps = 26/149 (17%)

Query: 2    SPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPD 61
            S  SH S LG   + SGQS    + G  +G     +SS +        Q+ +  Q     
Sbjct: 1512 SGSSHSSGLGHRESRSGQSSGYGQHGSSSG-----HSSTHGQHGSTSGQSSSCGQHG--- 1563

Query: 62   ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
                  ASS           G +   G G   S S ++PG  Q         GSG  +R 
Sbjct: 1564 ------ASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQ--------RGSG--SRQ 1607

Query: 122  APAWG--GASGASRDAARQPASGCGWCGG 148
            +P++G  G+      ++ Q  SG G   G
Sbjct: 1608 SPSYGRHGSGSGRSSSSGQHGSGLGESSG 1636



 Score = 28.1 bits (61), Expect = 3.2
 Identities = 34/154 (22%), Positives = 52/154 (33%), Gaps = 5/154 (3%)

Query: 6   HLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQR----RRPD 61
           H S+ G+  + SG S      G V+G  + F        S G +Q  +        R+  
Sbjct: 671 HSSSYGQHGSGSGWSSSNGPHGSVSGQSSGFGHKSGSGQSSGYSQHGSGSSHSSGYRKHG 730

Query: 62  ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
           +  G  + S      S G     G  G G+H S+     G           HGS      
Sbjct: 731 SRSGQSSRSEQH-GSSSGLSSSYGQHGSGSHQSSGHGRQGSGSGHSPSRVRHGSSSGHSS 789

Query: 122 APAWGGASGASRDAARQPASGCGWCGGQRRPEAG 155
           +    G+  +   +     SG G   G  + E+G
Sbjct: 790 SHGQHGSGTSCSSSCGHYESGSGQASGFGQHESG 823



 Score = 27.7 bits (60), Expect = 4.1
 Identities = 38/149 (25%), Positives = 55/149 (36%), Gaps = 26/149 (17%)

Query: 2    SPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPD 61
            S   H S LG   + SGQS    + G  +G     +SS +        Q+ +  Q     
Sbjct: 1042 SGSGHSSGLGHRESRSGQSSGYGQHGSSSG-----HSSTHGQHGSTSGQSSSCGQHG--- 1093

Query: 62   ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
                  ASS           G +   G G   S S ++PG  Q         GSG  +R 
Sbjct: 1094 ------ASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQ--------RGSG--SRQ 1137

Query: 122  APAWG--GASGASRDAARQPASGCGWCGG 148
            +P++G  G+      ++ Q  SG G   G
Sbjct: 1138 SPSYGRHGSGSGRSSSSGQHGSGLGESSG 1166



 Score = 27.7 bits (60), Expect = 4.1
 Identities = 38/149 (25%), Positives = 55/149 (36%), Gaps = 26/149 (17%)

Query: 2    SPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPD 61
            S   H S LG   + SGQS    + G  +G     +SS +        Q+ +  Q     
Sbjct: 2452 SGSGHSSGLGHRESRSGQSSGYGQHGSSSG-----HSSTHGQHGSTSGQSSSCGQHG--- 2503

Query: 62   ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
                  ASS           G +   G G   S S ++PG  Q         GSG  +R 
Sbjct: 2504 ------ASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQ--------RGSG--SRQ 2547

Query: 122  APAWG--GASGASRDAARQPASGCGWCGG 148
            +P++G  G+      ++ Q  SG G   G
Sbjct: 2548 SPSYGRHGSGSGRSSSSGQHGSGLGESSG 2576



 Score = 26.9 bits (58), Expect = 7.0
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 90  GTHTSASRKAPGEPQLDVTGGAEHGSGPEARG---APAWG-GASGASRDAARQP-ASGCG 144
           G H SASR + G  Q     G   G G    G   +P+ G   +G  R ++  P  SG G
Sbjct: 401 GQHESASRHSSGRGQHSSGSGQSPGHGQRGSGSGQSPSSGQHGTGFGRSSSSGPYVSGSG 460

Query: 145 WCGG 148
           +  G
Sbjct: 461 YSSG 464



 Score = 26.6 bits (57), Expect = 9.2
 Identities = 37/149 (24%), Positives = 54/149 (36%), Gaps = 26/149 (17%)

Query: 2    SPPSHLSTLGREPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPD 61
            S   H S LG   + SGQS    + G  +G     +SS +        Q+ +  Q     
Sbjct: 1982 SGSGHSSGLGHRESRSGQSSGYGQHGSSSG-----HSSTHGQHGSASGQSSSCGQHG--- 2033

Query: 62   ALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARG 121
                  ASS           G +   G G   S S ++PG  Q         GSG  +R 
Sbjct: 2034 ------ASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQ--------RGSG--SRQ 2077

Query: 122  APAWG--GASGASRDAARQPASGCGWCGG 148
            +P++G  G+      ++ Q   G G   G
Sbjct: 2078 SPSYGRHGSGSGRSSSSGQHGPGLGESSG 2106


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 35.0 bits (79), Expect = 0.026
 Identities = 40/135 (29%), Positives = 49/135 (36%), Gaps = 13/135 (9%)

Query: 4   PSHLSTLGREPAASGQS------RLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQR 57
           P+ L+T   +P   GQ       + +V P    GPQ        + D     +  A   R
Sbjct: 90  PTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPR 149

Query: 58  RRPDALEGLLASSRPPIPRSPGDRGQAGLGG--VGTHTSASRKAPGEPQLDVTGGAEHGS 115
            R D   G   +  PP P  PG  G  GLGG           +  G  QL V  G     
Sbjct: 150 GR-DGEPGTPGNPGPPGP--PGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPM 206

Query: 116 GPEARGAPAWGGASG 130
           GP  RG P   GA G
Sbjct: 207 GP--RGPPGPAGAPG 219



 Score = 29.6 bits (65), Expect = 1.1
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 72  PPIPRSPGDRGQAGLGGVGTHTSAS--RKAPGEPQLDVTGGAEHGSGPEARGAPAWGGAS 129
           P  P +PG +G+AG  G      A   R  PG P      GA    G +  G P   G++
Sbjct: 365 PGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTD--GIPGAKGSA 422

Query: 130 GA 131
           GA
Sbjct: 423 GA 424



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 68  ASSRPPIPRSPGDRGQAGLGG-VGTHTSASRKAP-GEPQLDVTGGAEHGSGPEARGAPAW 125
           A   P +   PG+RG AG+ G  G       K P G P  D   G    +GP   G P  
Sbjct: 742 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKD---GGRGLTGP--IGPPGP 796

Query: 126 GGASGASRDAARQPASGCGWCGGQRRP 152
            GA+G   +    P    G  G +  P
Sbjct: 797 AGANGEKGEVG--PPGPAGSAGARGAP 821



 Score = 28.5 bits (62), Expect = 2.4
 Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 72  PPIPRSPGDRGQAGLGGVGTH-----TSASRKAPGEPQLDVTGGAEHGSGPEARGAPAWG 126
           P  P  PGD G+AG  G            +R  PG P L    G  H   P   GA    
Sbjct: 245 PGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKG--HRGYPGLDGAKGEA 302

Query: 127 GASGASRDAARQPASG 142
           GA G   ++     +G
Sbjct: 303 GAPGVKGESGSPGENG 318



 Score = 27.7 bits (60), Expect = 4.1
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 77  SPGDRGQAGLGG-VGTHTSASRKAPGEPQLDVTGGAEHGSG-PEARGAPAWGGASGASRD 134
           +PG+RG +GL G  G +    R  PGEP L    GA   +G P   G     G SGA  +
Sbjct: 529 APGERGPSGLAGPKGANGDPGR--PGEPGLP---GARGLTGRPGDAGPQGKVGPSGAPGE 583

Query: 135 AARQPASGCGWCGGQ 149
             R    G     GQ
Sbjct: 584 DGRPGPPGPQGARGQ 598


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 35.0 bits (79), Expect = 0.026
 Identities = 32/100 (32%), Positives = 35/100 (35%), Gaps = 23/100 (23%)

Query: 60  PDALEGLLASSRPP----IPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGS 115
           P  L+GL  +  PP     P  PG +G AG             APG P     GG     
Sbjct: 637 PQGLQGLPGTGGPPGENGKPGEPGPKGDAG-------------APGAP-----GGKGDAG 678

Query: 116 GPEARGAPAWGGASGASRDAARQ-PASGCGWCGGQRRPEA 154
            P  RG P   GA G    A    P  G G  G    P A
Sbjct: 679 APGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGA 718



 Score = 31.2 bits (69), Expect = 0.37
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 75  PRSPGDRGQAGLGGVGTHTSASRK--APGEPQLD-VTGGAEHGSGPEARGAPAWGGASGA 131
           P   G+RG+AG+ GV        K  +PGEP  + + G A     P  RG     G  G 
Sbjct: 443 PGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGE 502

Query: 132 SRDAARQPASG 142
              A  + A G
Sbjct: 503 KGPAGERGAPG 513



 Score = 28.1 bits (61), Expect = 3.2
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 77  SPGDRGQAGLGGVGTHTSASRKA--PGEPQLDVTGGAEHGSG----PEARGAPAWGGASG 130
           +PG++G+ G  GV      S  A  PG   +    G+  G G    P ARG P   G++G
Sbjct: 829 APGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNG 888



 Score = 27.7 bits (60), Expect = 4.1
 Identities = 25/89 (28%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 69  SSRPPIPRSPGDRGQAGLGGV--------GTHTSASRKAPGEPQLDVTGGAEHGSGPEAR 120
           S RP  P   G RGQ G+ G             +  R  PG P      G    +GP+  
Sbjct: 560 SGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGP 619

Query: 121 GAPAW-GGASGASRDAARQPASGCGWCGG 148
             P   GG  G +     Q   G    GG
Sbjct: 620 PGPTGPGGDKGDTGPPGPQGLQGLPGTGG 648


>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
          Length = 1142

 Score = 35.0 bits (79), Expect = 0.026
 Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 19/124 (15%)

Query: 13  EPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPDALEGLLASSRP 72
           EP   G   L+  PG + G Q     S   M  RGP               +G+      
Sbjct: 508 EPGDPGPPGLIGSPG-LKGQQG----SAGSMGPRGPPGDVGLPGEHGIPGKQGIKGEKGD 562

Query: 73  P-----IPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEA-RGAPAWG 126
           P      P  PG +G+AG  G        +  PGEP LD   GA    GP+  RG P   
Sbjct: 563 PGGIIGPPGLPGPKGEAGPPG--------KSLPGEPGLDGNPGAPGPRGPKGERGLPGVH 614

Query: 127 GASG 130
           G+ G
Sbjct: 615 GSPG 618


>gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens]
          Length = 196

 Score = 34.7 bits (78), Expect = 0.034
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 14/77 (18%)

Query: 81  RGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAWG-----GASGASRDA 135
           RG+ G  G+G   +A+R+ P    +D T        P   GAP++      G SG S   
Sbjct: 58  RGEPGSRGLGEGPAAARR-PQVQSIDTT--------PSGEGAPSFSRAQRPGRSGPSPSL 108

Query: 136 ARQPASGCGWCGGQRRP 152
           A  PA G G   G  RP
Sbjct: 109 ASDPAPGRGAAWGSLRP 125


>gi|4507161 SRY-box 11 [Homo sapiens]
          Length = 441

 Score = 34.7 bits (78), Expect = 0.034
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 48  PNQTWASRQRRRPDALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTS-ASRKAPGEPQLD 106
           P+  +  R++ + D      AS  P    + G  G AG G  G  TS  S K  G+ +  
Sbjct: 114 PDYKYRPRKKPKMDPSAKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAP 173

Query: 107 VTGGAEHGSGPEARGAPAWGGASGASRDAARQPASGCGWCG 147
              GA+ G+G  A+     G        + R   SG G  G
Sbjct: 174 AAAGAKAGAGKAAQSGDYGGAGDDYVLGSLRVSGSGGGGAG 214



 Score = 26.9 bits (58), Expect = 7.0
 Identities = 13/53 (24%), Positives = 21/53 (39%)

Query: 102 EPQLDVTGGAEHGSGPEARGAPAWGGASGASRDAARQPASGCGWCGGQRRPEA 154
           +P++D +        PE   A   GG++G     A+        CG  + P A
Sbjct: 123 KPKMDPSAKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAPAA 175


>gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens]
          Length = 758

 Score = 34.3 bits (77), Expect = 0.044
 Identities = 36/117 (30%), Positives = 45/117 (38%), Gaps = 5/117 (4%)

Query: 12  REPAASGQSRLLVRPGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRPDALEGLLASSR 71
           R P   G S      G  A   A+ +    +     P Q WAS  RR+   L G  A S 
Sbjct: 69  RRPQRHGGSGTAAHAG-AARQVASGFMPHRRRRRTAPGQPWASGFRRQGRGLSGPGAGSG 127

Query: 72  PPIPRSPGDRGQAGLGGVGTHTS-ASRKAPGEPQLDVTGGAEHGSGPEARGA-PAWG 126
               R     G+AG G +   TS A    P  P+     GAE  S P ++    AWG
Sbjct: 128 R--GRGGALIGRAGGGAMAAKTSPAMLPLPPRPRFRFGAGAEEASWPLSQNVYGAWG 182


>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 855

 Score = 33.9 bits (76), Expect = 0.058
 Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 43  MDSRGPNQTWASRQRRRPDALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGE 102
           MD++       +  R       GLL    P  PR P     A L  +G   +  RK    
Sbjct: 1   MDNKRDKAKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRK---- 56

Query: 103 PQLDVTGGAEHGSGPEA--RGAPAWGGASGASRDAARQPASGCGWCGGQRRPEA 154
           P  +  GG    + PE+  R  P     + +   A+R PASG     G+R P A
Sbjct: 57  PLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASG----RGERAPPA 106


>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 1124

 Score = 33.9 bits (76), Expect = 0.058
 Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 43  MDSRGPNQTWASRQRRRPDALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGE 102
           MD++       +  R       GLL    P  PR P     A L  +G   +  RK    
Sbjct: 1   MDNKRDKAKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRK---- 56

Query: 103 PQLDVTGGAEHGSGPEA--RGAPAWGGASGASRDAARQPASGCGWCGGQRRPEA 154
           P  +  GG    + PE+  R  P     + +   A+R PASG     G+R P A
Sbjct: 57  PLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASG----RGERAPPA 106


>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
           sapiens]
          Length = 940

 Score = 33.5 bits (75), Expect = 0.075
 Identities = 23/76 (30%), Positives = 24/76 (31%), Gaps = 6/76 (7%)

Query: 78  PGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAWGGASGASRDAAR 137
           P  RG+ G GG           P  P     GG   G  P  RG P  G   G       
Sbjct: 702 PYHRGRGGRGG------NEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHE 755

Query: 138 QPASGCGWCGGQRRPE 153
            P  G G   G R  E
Sbjct: 756 GPGGGMGNSSGHRPHE 771



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 32/129 (24%), Positives = 38/129 (29%), Gaps = 15/129 (11%)

Query: 26  PGQVAGPQAAFYSSFNKMDSRGPNQTWASRQRRRP-DALEGLLASSRPPIPRSPGDRGQA 84
           P    GP              GP     +    RP +   G + S   P    PG     
Sbjct: 735 PNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRP-HEGPG----G 789

Query: 85  GLGGVGTHTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAWGGASGASRDAARQPASGCG 144
            +GG G H     + PG       GG   GSG      P  G  +G        P    G
Sbjct: 790 SMGGGGGHRP--HEGPG-------GGISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMG 840

Query: 145 WCGGQRRPE 153
             GG R  E
Sbjct: 841 GSGGHRPHE 849


>gi|239749065 PREDICTED: hypothetical protein XP_002346903 [Homo
           sapiens]
          Length = 128

 Score = 33.5 bits (75), Expect = 0.075
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 72  PPIPRSPGDRGQAGLGGVGT------HTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAW 125
           PP+P  PGD     LGGV +           R+ P     +V  G E   G EA   P  
Sbjct: 5   PPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARPV- 63

Query: 126 GGASGASRDAARQPASGCG 144
           G  SGA R    + A+  G
Sbjct: 64  GSHSGAPRVCRAEGAASPG 82


>gi|239508743 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 128

 Score = 33.5 bits (75), Expect = 0.075
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 72  PPIPRSPGDRGQAGLGGVGT------HTSASRKAPGEPQLDVTGGAEHGSGPEARGAPAW 125
           PP+P  PGD     LGGV +           R+ P     +V  G E   G EA   P  
Sbjct: 5   PPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARPV- 63

Query: 126 GGASGASRDAARQPASGCG 144
           G  SGA R    + A+  G
Sbjct: 64  GSHSGAPRVCRAEGAASPG 82


>gi|13775236 scratch [Homo sapiens]
          Length = 348

 Score = 33.5 bits (75), Expect = 0.075
 Identities = 30/93 (32%), Positives = 33/93 (35%), Gaps = 18/93 (19%)

Query: 55  RQRRRPDALEGLLASSRPPIPRSPGDRGQAGLGGVGTHTSASRKAPGEPQLDVTGGAEHG 114
           R RR+        A S        GD G  G GG G  +  S   PG       GG   G
Sbjct: 123 RSRRKASNAGSAAAPSTASAAAPDGDAG--GGGGAGGRSLGS--GPGG-----RGGTRAG 173

Query: 115 SGPEARGAPAWGGASGASRDAARQPASGCGWCG 147
           +G EAR  P   GA G            CG CG
Sbjct: 174 AGTEARAGPGAAGAGG---------RHACGECG 197


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.130    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,059,095
Number of Sequences: 37866
Number of extensions: 439410
Number of successful extensions: 3000
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 386
Number of HSP's that attempted gapping in prelim test: 2373
Number of HSP's gapped (non-prelim): 955
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press